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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR034365
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.062s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0019200.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389420 2394369 +
2 domain predictions
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LotjaGi1g1v0019200.2
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389420 2394472 +
2 domain predictions
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LotjaGi1g1v0019200.3
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389569 2394398 +
2 domain predictions
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LotjaGi1g1v0019200.4
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200 LjG1.1_chr1 2389569 2394398 +
2 domain predictions
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LotjaGi2g1v0443700.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G21100.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|G7K989|G7K989_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0443700 LjG1.1_chr2 93931504 93936589 -
2 domain predictions
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LotjaGi3g1v0117500.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|A0A0R0H030|A0A0R0H030_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500 LjG1.1_chr3 14411408 14416410 -
2 domain predictions
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LotjaGi3g1v0117500.2
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|I1LNZ6|I1LNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500 LjG1.1_chr3 14411598 14416355 -
2 domain predictions
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LotjaGi3g1v0117500.3
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|I1LNZ6|I1LNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500 LjG1.1_chr3 14411888 14416406 -
2 domain predictions
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LotjaGi3g1v0546300.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546300 LjG1.1_chr3 96245167 96250961 -
2 domain predictions
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LotjaGi3g1v0546300.2
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546300 LjG1.1_chr3 96246154 96250935 -
2 domain predictions
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LotjaGi3g1v0546400.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546400 LjG1.1_chr3 96254882 96260752 -
2 domain predictions
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LotjaGi6g1v0149000.1
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444767 42449395 +
2 domain predictions
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LotjaGi6g1v0149000.2
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0R0IVN5|A0A0R0IVN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444767 42449395 +
2 domain predictions
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LotjaGi6g1v0149000.3
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444775 42450544 +
2 domain predictions
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LotjaGi6g1v0149000.4
n.a. RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0R0IVN5|A0A0R0IVN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149000 LjG1.1_chr6 42444775 42450544 +
2 domain predictions
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