Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR034365

Source: InterPro

Description

IPR034365 is a AtC3H46-like, RNA recognition motif.

<p>This entry represents the RNA recognition motif (RRM) found in AtC3H46, a putative RNA-binding protein that contains an RNA recognition motif (RRM) and a CCCH class of zinc finger, typically C-X8-C-X5-C-X3-H. It may possess ribonuclease activity [[cite:PUB00083345]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0019200.1
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200
Domains
22
LotjaGi1g1v0019200.2
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200
Domains
25
LotjaGi1g1v0019200.3
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200
Domains
22
LotjaGi1g1v0019200.4
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|G7K4G1|G7K4G1_MEDTR RNA-binding domain CCCH-type zinc finger protein; Found in the gene: LotjaGi1g1v0019200
Domains
22
LotjaGi2g1v0443700.1
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G21100.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55; TrEMBL-Plants: tr|G7K989|G7K989_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0443700
Domains
21
LotjaGi3g1v0117500.1
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|A0A0R0H030|A0A0R0H030_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500
Domains
20
LotjaGi3g1v0117500.2
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|I1LNZ6|I1LNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500
Domains
20
LotjaGi3g1v0117500.3
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|I1LNZ6|I1LNZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117500
Domains
20
LotjaGi3g1v0546300.1
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546300
Domains
20
LotjaGi3g1v0546300.2
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546300
Domains
20
LotjaGi3g1v0546400.1
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53; TrEMBL-Plants: tr|V7AH88|V7AH88_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0546400
Domains
20
LotjaGi6g1v0149000.1
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000
Domains
23
LotjaGi6g1v0149000.2
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0R0IVN5|A0A0R0IVN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149000
Domains
22
LotjaGi6g1v0149000.3
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000
Domains
22
LotjaGi6g1v0149000.4
– RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0R0IVN5|A0A0R0IVN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149000
Domains
22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd12458 CDD 1 6.67