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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0443800 |
| Transcript ID | LotjaGi2g1v0443800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G51510.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A; TrEMBL-Plants: tr|V7CI74|V7CI74_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0443800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93938916..93942375) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAAATATCATTTGCCCTAATAAACCCCAGGAGCAAAGTAATTCGCAAAATTCACATCTACAAAGTGATAAATCACA ACGAACAAGTAGCTTCCCTTCAGTTGAGTCTCATTTGCCATTAACATTCCACCAAAACCTAAACCCAGTCTCTGTGTTTC AGCGATGCAAGGAGGAGGCGCCGCCGAGGGAGAAGCTCTTGATTTCGAACCGGAGGACGATGACCTCATGGACGAGGACG GCGCTCCTGACGCCGACGCTTCTCCGCCTCACCCCAAGCTCAAATCCGCCATCACTTCCGGCGCTGCTCCCTCCCTCTCC GCCCCTAAAAAGACCAAGGGCCGTGGTTTCCGCCAGGAGACTGACACCAACCGCAACAACCGCCTCTCCGGCTCTGATTT CGACTCTCTCACCACCGAGGGTGGTCCTGGCCCTCAGAGATGTTAGTTTCCCCCATTTTCCCCAATTCCCAATTTTCCGA TTAGGGTTTCGTTTTTTTGTTTTACAATTTTGTTCTTTCAATTTTGTTGCAGCCATTGAAGGGTGGATTATTCTGGTCAC TGGAGTTCACGAGGAAGCGCAAGAGGATGATTTGCAAAACGCCTTTGGTGAATACGGGGAGATTAAGAACCTGCATTTGA ATCTCGATCGTCGCACTGGTTTCGTCAAAGTAAGTGATTCTAATGCTCTTTCATTCTATTTGGAACTGATTTGTTGTTAT TTCTTCAGTTGTGAATGGAATTAACTAACTTCCAATGGTGTCGCGTCTTTAATTGATAATTTGATCATAAGAATGTTTTT AGGTTGGACTTAACTTAGAAGGGACTGATATCAATGTAATGCGGGCAATTATATTTTGCCTTCGATTCGTTACACTCTTT TTCCAAATAGCACCTGTTGTATTTACTAGTTTTACAACTTGACAAAAAGCATATGGGTTTAACCTGGTAAATGGGATTAT TTGACCTACATGGTACTCACCTTTTATGTGTATATAGCTGGCATTATAGTGTTAAGGTCTGTTTAGCAGATCCTGTGATC CATTCGATGATTTGACTTTTGATATGGTAATTTCACTTCAAATTGGCTTAATTTTGCATGTCTTGACTCTTGGCAATTTG GCATGGATTTCTTTTCATTTCATGCTTAGTTGTTCGCTCCAAACTGATACTTTAAGGGACCAAATGGTTGTTAATTTGTT TCTCATCGATAGACAAGGATCTGACGTCACACTAATACATTTTTTTTGGGCGCTGTAAGTATAAATCAATGTTGTCTCGA TGTTTTAAGGATGTGAAGTAAGAAAGACACAATTCTTGTAATTTCTTTTTTCGTTTTTGTTTGGAATAATGAATACTCTT GTCATCTTGTGTGCCTCTGTCCCTTCTTTCAGTCATCTTGTTTTGTTGACAGAAGGTAAGTATCTCTTAATAGGCTATTT GTGAACACAGTTATTTCCATCTAAGTGAATTTTCTGTCACCTGTGCTTCTTTATACACCCGGCATTGTTTGATGTTTTAA TATCAGTTTCGGGAATGGAAAATTTGCTTTCTTATTAACCTGTAACTCTGTTCTACTTATTTTTCTCTTAGCAACTCGAT CACTTGAATTGAAGATTTGGTTTCTGTACTGACGAGTATTTTGATTTTAGGGTTATGCACTGATTGAATATGAACGTGCT GAGGAAGCTAAAAATGCCATAGAGAATTTGAATGGATCTGAGCTTCTTACCCAAAACATTTATGTCGACTGGGCTTTCAG CAGTGGGCCTATTAATGAGTCAATCAGAAGAAAGAATGCTAGGTATGTTTCTTTAAGCATCAGGGTAGTTTGTGTTGTAT TGCAGCATCAGTCATTGGTAAAGTTTCATTTGATGTTGGTTTGAGTTTTGTTTCTCTATCTGGGTTGGTACTGTACTACT GTATTACTATTTTCCCATTGTAGAATTTAAGTTAGCCAACACGAACTAGCTCCTTTAAAGTTTGTAAAACATATGCTACT CCTTTGTTGCTCAGGTTCATCAGAATTTAAAATGGATGTTGCATAGTTTTCTCCTTGGTAAATGGATTTCAATATGAAAA TGTATTTTCCTGGACAGTACATCTGCACATGGCTGTAAAATGATTTGCATTCCAATTTTAAGCTTTCCCCTTTCAGTTGT GTTAAGCAGATGCTAAATGCCATGCTTCTTCCCCTTTAATAGACACCCTGTTATGAACTTAAATATCTATTTTAAAACTG GTCAGAACTTCGACCTTTTGCAAGTTAGCGATTTAGTAAAAAATTCTGTGACTTATCATTAAGATTTTTCAGAGTTTAAC ACTAGAGTGTTTGGAACCTTGACATTTTTCAGGCCAACTCGTGATCGGCGCTCCAGGAGCCCTCGCAGGAGATATTGATG TGGTGTGTATTGGTAACCTGATTGTGCCGTTGTGTGAACTCTTAAATGAGCAGTTTGTTTTCTATTGGTCAAGAAGTGGA AATTTTTTCCAATACTTGTGCTCCCCCTTCAGGCAAAACACACCTTGGTTGCTGAGGATTCTTGTCTAATACATCCTCTG TTGAATGGTATTGACTCTTAGCTTAGTTTATTATGGTGTATGATGTTTAACTAACAGACTAGTATTGCGTTGCAGTAATG TGTTCTATTCGAGCTTTTTTTACATGTAATGGCATTATATTGAGGAAAGTAGGATGTCATTTGGATTGCATCTTGTTTGT GTTGCATGTGTAGTGGGGCTGAGTGTTTCTTTTTCTTGCATCTTTTTTTCCTTTACATGGTCAATCACCTCTCGGTTATT TGTTGCGTGTAAAGGCGCAATAGAGTTAAACCAGTACGTAACACCAACCTTTCAGTTCGGTGGAATTGGGAAATTTTTGT CGTTTTGTTCGTAGCCTCATCTGACACATGCCTTTAATTGCACAGATGAGCAATGACTCCGTTTGTTGTGCTTGACTCTC CTTACAATGGGAAAATAGGTGGATAGAAAATAAGTAAAAGCAATAGAGAAAACAAAATGACTTAATGAAATGTTTAATAA GATGAAAATGTGAGTTATTATAAGGGACGGAGGGAGTAAAAAAAATACAGATTTTGAAGTGAATACACGAAAGTTTGGAG CAACAATGGGGAGATACACTAAGAAAAATCAACAAAGATTCTTGTCTTTAAGCTCCGAGTACGCAATTAAACCCTTTTAA GTTTTAACTAGGAAAATAAACTCCAACTACAACAAGAGAAGAATAAGCTCTTCATTTTTATGGGAGATTGCAACGGATAA AAGAAAAACCTAAGAACAACTTTGTGTTGTCTTTTGGAACATTTTTTACTTCTTTCTCATTCTTTAGAGGATTTCTCTTA AGATGATTTCTCTGGTTCTCCTTTGTTTCATCTCTTAAAGATGTGCCAAAAGATCAATAAATTCAACCTTTGTCAAGTTT CTGACTATTTAAAGGAATCT
CDS sequence (LotjaGi2g1v0443800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGAGGAGGCGCCGCCGAGGGAGAAGCTCTTGATTTCGAACCGGAGGACGATGACCTCATGGACGAGGACGGCGC TCCTGACGCCGACGCTTCTCCGCCTCACCCCAAGCTCAAATCCGCCATCACTTCCGGCGCTGCTCCCTCCCTCTCCGCCC CTAAAAAGACCAAGGGCCGTGGTTTCCGCCAGGAGACTGACACCAACCGCAACAACCGCCTCTCCGGCTCTGATTTCGAC TCTCTCACCACCGAGGGTGGTCCTGGCCCTCAGAGATCCATTGAAGGGTGGATTATTCTGGTCACTGGAGTTCACGAGGA AGCGCAAGAGGATGATTTGCAAAACGCCTTTGGTGAATACGGGGAGATTAAGAACCTGCATTTGAATCTCGATCGTCGCA CTGGTTTCGTCAAAGGTTATGCACTGATTGAATATGAACGTGCTGAGGAAGCTAAAAATGCCATAGAGAATTTGAATGGA TCTGAGCTTCTTACCCAAAACATTTATGTCGACTGGGCTTTCAGCAGTGGGCCTATTAATGAGTCAATCAGAAGAAAGAA TGCTAGGCCAACTCGTGATCGGCGCTCCAGGAGCCCTCGCAGGAGATATTGA
Protein sequence (LotjaGi2g1v0443800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGGGAAEGEALDFEPEDDDLMDEDGAPDADASPPHPKLKSAITSGAAPSLSAPKKTKGRGFRQETDTNRNNRLSGSDFD SLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNG SELLTQNIYVDWAFSSGPINESIRRKNARPTRDRRSRSPRRRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 93 | 93 | - | – | |
| PANTHER | 5 | 202 | 198 | 1.0E-73 | – | |
| PANTHER | 5 | 202 | 198 | 1.0E-73 | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| Gene3D | 13 | 187 | 175 | 4.3E-30 | ||
| PRINTS | 51 | 63 | 13 | 4.9E-18 | ||
| MobiDBLite | 68 | 88 | 21 | - | – | |
| PRINTS | 88 | 102 | 15 | 4.9E-18 | ||
| SUPERFAMILY | 90 | 201 | 112 | 8.69E-27 | ||
| CDD | 91 | 178 | 88 | 9.89057E-62 | ||
| ProSiteProfiles | 97 | 175 | 79 | 16.006 | ||
| SMART | 98 | 171 | 74 | 4.1E-19 | ||
| Pfam | 99 | 168 | 70 | 7.8E-16 | ||
| PRINTS | 144 | 160 | 17 | 4.9E-18 | ||
| PRINTS | 162 | 174 | 13 | 4.9E-18 | ||
| MobiDBLite | 183 | 203 | 21 | - | – | |
| MobiDBLite | 189 | 203 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi2g1v0443800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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