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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0445200 |
| Transcript ID | LotjaGi2g1v0445200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G71490.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490; TrEMBL-Plants: tr|K7LGU0|K7LGU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0445200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94047483..94050597) extracted from Lotus japonicus Gifu genome v1.2.
AAGCATTTCCCTTTTTAAATTTTACTTACCTGCTCATCACGAAGCTACAACCTCCATTTTCTCGGACCAAATAGCGGCTG CGGCTGATTCTTCCGCCGCCGTCACCACCGTCGTTGATTCATTTCCAATTACACCCGGTTGTTCATTTCACTGTTGCAGT TGGTGATGAAGGTTTGGGTAAAAGTACTCACTGCTTTCAAATCCCTCGTTTAACACTCGATGTTGGAAGAACCTTTCTCC GCGAAACAGTTGCTACAAAACCACACCAATCAAATGTTCATGTTGTTGAAGACATGTGTTCATGATCACAACCCACTTTC CATCTTCAGTTTATGCCATCTTCCAGAGACCTCTTCTTGTCTAAGCTCCAGAAGTGTATCCCAAAATCATGGAAACAACA ACAACCCACCAAACCCTTTCACAAACCACTTGTGTCTGAGTTTGATAATGGTGAATCTATACTTGGTGTTCTTCTTGCAT CCTTCAAGGATTTTTTAACTCATGGGCACTTGTCAAATGCAGTCAAAACGTTCATTCACATACAGCATCATGCAGCTTCT CCTGGGTTTTCCCATATTGTCTCGCGCCCCATTAGCTCTCTTCTCTTGGGTTGCATCAAAGTTAAGTCTCTTTCACAGGG GAAGCAGCTTCATGCCCATGTTATTCAACTGGGTTTTGATCAAAATCATGTATTGGTTTCTAGGCTTTTTCATTTTTATA CAAGATTCAATCTACTTGATGATGCTTGTACTGTCACTGAGAGCTCTAATAGTTTGGACCCTTTGCATTGGAACATGCTT ATCTCATTGTATGTTAGAAATGAGCTCTTTGTGGAGGCTCTTTCTGTTTATAAGAAAATGTTGAGGAAGAATGTTAAACC AGATGAATTCACTTACCCATCTGTTCTCAAGGCTTGTGGTGAATTGTTAGATTGTGCTACAGGTGTGGAGGTTTGCAAGG CTATTGAAACTGGCTCCATGGAGTGGAGCTTGTTTGTGCACAATGCACTGGTCTCCATGTATGGTAGGTTTGGGGAACTG GAGGTTGCTCGCCACTTGTTTGATAATATGCCGGAAAGAGATGCTGTTTCTTGGAACACTATCATCAGCTGTTATGCCTC TAGGGGAATGTTGGTGGAGGCATTTCAGCTATGTGATAGGATGCAAGAGGAGGGTATTAAAGAGAATATTAGAATATGGA ACACCATGGCTGGAGGGTGCTTACGTTCAGGCAAGTTCATCGGGGCACTTAATCTGCTTTCTCAGATGAGAACAAGCATT CATTTGGACCATGTTGCAATGGTTGTTGGATTGAATACATGCTCTCAAATTGGAGCCCTTAAATTGGGAAAGGAGATTCA CGGTCATGCTGTAAGAACTTGCTTTGATGTTATTGACAACGTAAGAAATGCATTGATCACAATGTATTCCAGGTGTGGAG ACCTTGGTCATGCATATATGTTGTTTCATAGAATGGAAGAGAAAGGTTTGATCACTTGGAACGCCATGCTCTCGGGATTT GCTCACATGGGCCGAGCTGAGGAAGTCTCCTTCCTTTTTCGGCAAATGGTACACAAGGGTATTGAACCTAATTACATGAC CATTGCAAGCGTTCTTCCCCTTTGCGCTCGCATAGCGAATCTCCAGCATGGTAAAGAGTTCCATTGCTACATCATGAAGC GTGAACAGTTTAAAGACGACTTATTATTGTGGAACATTCTGGTGGACATGTATGCAAGGTCTGGCAAAGTTTTAGAAGCC AAAAGAGTGTTTGATTCATTGAGTACACGAGATAAATTCACATACACTTCCATGATTAGGGGATATGGTATGAAGGGAGA AGGGAAAATAGCTCTGAAACTATATGAAGAGATGCTCAAGTTTAAGATTAATCCTGATCATGTAACTATGGTTGCAGTTC TAACGGCCTGTAGTCATTCTGGTCTTGTAGCACAAGGGGATTTTCTCTTTAAAAAGATGACAGAGGTTTTTGGAATAACT CCAAGAATTGAGCACTATGCCTGCATGGCTGATCTTTATGGGAGGGCTGGTTTTCTGAATAAAGCAAAGGAGATTATCAC AAGGATGCCATACACACCAACACCGGCGATGTGGGTGACTCTCATCAGAGCTTGTCAAATCCATGGAGATACAATGATGG GGGAATGGGCTGCAGGGAAGTTGCTAGAAATGAAGCCTGATCATCCAGGCTATTACTTGTTGATTGCGAATATATATGCT GCTGCTGGTTGTTGGAGCAAACTAGAACAAGTGAGAACTTATATAAGGAATCTGGGTGTGAAAAAAGCCCCTGGTTGTGC TTCGGTTGATGATGGTAGTGAGCTTTCTCCATTTTTAGTGGGGGACACTTCCAACCTTCATGCCGGTGAGATTTACCCCT TGATGGATGGATTGAATGAACTAAGGAAAGATGCTGGTTATAAACGTAGTGAGGAGTTTTCATCTGAGGAAGATGTTGAG ATGAATGTTGCAGGGAATGTATACTGAATAGAAGTTAAACATATGATCATAGATAGCTATTCTTGTAAATTTAAGAGATT GTTATTACAATCCAAAACGCAAGGCCTAAAAAGCAGAAATTTACTTAATCAATTGCTAGATCAAGGAGCATAATTGGATT CTACTCAGTAAAACTATCATGAAAAGTTTATGCACATTGTAGCTCACTACTCTGTTCCTAAACGCCAGCCATTTCATTTA CAAGCTACCCTTTTACATTGCTAGAGATAAAACGACGAGTGAACATAAAGCAGGTCTGTGTCTATATACTGCTTGAGATT TGATTATTTCCATATGAAAGACAGAATTGCTTGAACTAAAAGAGCTCCCACTTATTGAAATTTTTAAAAAGTATTTTTGT AATACAGCTCATTTTTTATTTTGCAGAAGCTATTTTTTCTAGTTTAATTTTATCGTTGAGCACAACAAACTTAGCTTAGG AGAAAAGTATTGGATATTCTGTACAGCATTAGTATTCAAATAAAAGCCTTGAGAGATCAAAATTAGTATCAAAATACATT TTATAAAAAAAATTGTAAAACAACACCTAAATATGTTTTGGAACCAACGAGGTCGATTCCTAGGCAGTATATAAC
CDS sequence (LotjaGi2g1v0445200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATCTTCCAGAGACCTCTTCTTGTCTAAGCTCCAGAAGTGTATCCCAAAATCATGGAAACAACAACAACCCACCAA ACCCTTTCACAAACCACTTGTGTCTGAGTTTGATAATGGTGAATCTATACTTGGTGTTCTTCTTGCATCCTTCAAGGATT TTTTAACTCATGGGCACTTGTCAAATGCAGTCAAAACGTTCATTCACATACAGCATCATGCAGCTTCTCCTGGGTTTTCC CATATTGTCTCGCGCCCCATTAGCTCTCTTCTCTTGGGTTGCATCAAAGTTAAGTCTCTTTCACAGGGGAAGCAGCTTCA TGCCCATGTTATTCAACTGGGTTTTGATCAAAATCATGTATTGGTTTCTAGGCTTTTTCATTTTTATACAAGATTCAATC TACTTGATGATGCTTGTACTGTCACTGAGAGCTCTAATAGTTTGGACCCTTTGCATTGGAACATGCTTATCTCATTGTAT GTTAGAAATGAGCTCTTTGTGGAGGCTCTTTCTGTTTATAAGAAAATGTTGAGGAAGAATGTTAAACCAGATGAATTCAC TTACCCATCTGTTCTCAAGGCTTGTGGTGAATTGTTAGATTGTGCTACAGGTGTGGAGGTTTGCAAGGCTATTGAAACTG GCTCCATGGAGTGGAGCTTGTTTGTGCACAATGCACTGGTCTCCATGTATGGTAGGTTTGGGGAACTGGAGGTTGCTCGC CACTTGTTTGATAATATGCCGGAAAGAGATGCTGTTTCTTGGAACACTATCATCAGCTGTTATGCCTCTAGGGGAATGTT GGTGGAGGCATTTCAGCTATGTGATAGGATGCAAGAGGAGGGTATTAAAGAGAATATTAGAATATGGAACACCATGGCTG GAGGGTGCTTACGTTCAGGCAAGTTCATCGGGGCACTTAATCTGCTTTCTCAGATGAGAACAAGCATTCATTTGGACCAT GTTGCAATGGTTGTTGGATTGAATACATGCTCTCAAATTGGAGCCCTTAAATTGGGAAAGGAGATTCACGGTCATGCTGT AAGAACTTGCTTTGATGTTATTGACAACGTAAGAAATGCATTGATCACAATGTATTCCAGGTGTGGAGACCTTGGTCATG CATATATGTTGTTTCATAGAATGGAAGAGAAAGGTTTGATCACTTGGAACGCCATGCTCTCGGGATTTGCTCACATGGGC CGAGCTGAGGAAGTCTCCTTCCTTTTTCGGCAAATGGTACACAAGGGTATTGAACCTAATTACATGACCATTGCAAGCGT TCTTCCCCTTTGCGCTCGCATAGCGAATCTCCAGCATGGTAAAGAGTTCCATTGCTACATCATGAAGCGTGAACAGTTTA AAGACGACTTATTATTGTGGAACATTCTGGTGGACATGTATGCAAGGTCTGGCAAAGTTTTAGAAGCCAAAAGAGTGTTT GATTCATTGAGTACACGAGATAAATTCACATACACTTCCATGATTAGGGGATATGGTATGAAGGGAGAAGGGAAAATAGC TCTGAAACTATATGAAGAGATGCTCAAGTTTAAGATTAATCCTGATCATGTAACTATGGTTGCAGTTCTAACGGCCTGTA GTCATTCTGGTCTTGTAGCACAAGGGGATTTTCTCTTTAAAAAGATGACAGAGGTTTTTGGAATAACTCCAAGAATTGAG CACTATGCCTGCATGGCTGATCTTTATGGGAGGGCTGGTTTTCTGAATAAAGCAAAGGAGATTATCACAAGGATGCCATA CACACCAACACCGGCGATGTGGGTGACTCTCATCAGAGCTTGTCAAATCCATGGAGATACAATGATGGGGGAATGGGCTG CAGGGAAGTTGCTAGAAATGAAGCCTGATCATCCAGGCTATTACTTGTTGATTGCGAATATATATGCTGCTGCTGGTTGT TGGAGCAAACTAGAACAAGTGAGAACTTATATAAGGAATCTGGGTGTGAAAAAAGCCCCTGGTTGTGCTTCGGTTGATGA TGGTAGTGAGCTTTCTCCATTTTTAGTGGGGGACACTTCCAACCTTCATGCCGGTGAGATTTACCCCTTGATGGATGGAT TGAATGAACTAAGGAAAGATGCTGGTTATAAACGTAGTGAGGAGTTTTCATCTGAGGAAGATGTTGAGATGAATGTTGCA GGGAATGTATACTGA
Protein sequence (LotjaGi2g1v0445200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSSRDLFLSKLQKCIPKSWKQQQPTKPFHKPLVSEFDNGESILGVLLASFKDFLTHGHLSNAVKTFIHIQHHAASPGFS HIVSRPISSLLLGCIKVKSLSQGKQLHAHVIQLGFDQNHVLVSRLFHFYTRFNLLDDACTVTESSNSLDPLHWNMLISLY VRNELFVEALSVYKKMLRKNVKPDEFTYPSVLKACGELLDCATGVEVCKAIETGSMEWSLFVHNALVSMYGRFGELEVAR HLFDNMPERDAVSWNTIISCYASRGMLVEAFQLCDRMQEEGIKENIRIWNTMAGGCLRSGKFIGALNLLSQMRTSIHLDH VAMVVGLNTCSQIGALKLGKEIHGHAVRTCFDVIDNVRNALITMYSRCGDLGHAYMLFHRMEEKGLITWNAMLSGFAHMG RAEEVSFLFRQMVHKGIEPNYMTIASVLPLCARIANLQHGKEFHCYIMKREQFKDDLLLWNILVDMYARSGKVLEAKRVF DSLSTRDKFTYTSMIRGYGMKGEGKIALKLYEEMLKFKINPDHVTMVAVLTACSHSGLVAQGDFLFKKMTEVFGITPRIE HYACMADLYGRAGFLNKAKEIITRMPYTPTPAMWVTLIRACQIHGDTMMGEWAAGKLLEMKPDHPGYYLLIANIYAAAGC WSKLEQVRTYIRNLGVKKAPGCASVDDGSELSPFLVGDTSNLHAGEIYPLMDGLNELRKDAGYKRSEEFSSEEDVEMNVA GNVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 35 | 198 | 164 | 2.5E-14 | ||
| PANTHER | 63 | 198 | 136 | 9.8E-106 | – | |
| ProSiteProfiles | 149 | 183 | 35 | 11.586 | ||
| TIGRFAM | 153 | 185 | 33 | 1.0E-7 | ||
| Pfam | 153 | 195 | 43 | 5.4E-11 | ||
| Gene3D | 205 | 341 | 137 | 7.0E-26 | ||
| PANTHER | 214 | 282 | 69 | 9.8E-106 | – | |
| ProSiteProfiles | 219 | 249 | 31 | 8.627 | ||
| TIGRFAM | 222 | 250 | 29 | 0.0028 | ||
| Pfam | 222 | 249 | 28 | 0.013 | ||
| ProSiteProfiles | 250 | 284 | 35 | 11.805 | ||
| TIGRFAM | 252 | 283 | 32 | 3.1E-8 | ||
| Pfam | 252 | 282 | 31 | 4.7E-8 | ||
| ProSiteProfiles | 285 | 315 | 31 | 8.462 | ||
| Pfam | 288 | 314 | 27 | 0.002 | ||
| PANTHER | 337 | 442 | 106 | 9.8E-106 | – | |
| Gene3D | 342 | 443 | 102 | 9.1E-19 | ||
| ProSiteProfiles | 354 | 384 | 31 | 7.158 | ||
| TIGRFAM | 359 | 386 | 28 | 3.2E-4 | ||
| Pfam | 359 | 386 | 28 | 3.6E-5 | ||
| ProSiteProfiles | 385 | 419 | 35 | 12.036 | ||
| TIGRFAM | 387 | 420 | 34 | 2.0E-7 | ||
| Pfam | 387 | 428 | 42 | 2.1E-7 | ||
| PANTHER | 423 | 652 | 230 | 9.8E-106 | – | |
| Gene3D | 444 | 549 | 106 | 2.3E-23 | ||
| ProSiteProfiles | 456 | 486 | 31 | 9.098 | ||
| Pfam | 460 | 483 | 24 | 0.0011 | ||
| TIGRFAM | 460 | 485 | 26 | 8.0E-4 | ||
| Pfam | 487 | 534 | 48 | 2.8E-9 | ||
| ProSiteProfiles | 487 | 521 | 35 | 11.63 | ||
| TIGRFAM | 489 | 522 | 34 | 2.8E-7 | ||
| ProSiteProfiles | 522 | 557 | 36 | 6.588 | ||
| Gene3D | 550 | 669 | 120 | 1.2E-10 | ||
| ProSiteProfiles | 558 | 592 | 35 | 6.27 | ||
| Pfam | 562 | 585 | 24 | 1.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0445200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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