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LotjaGi2g1v0446800.3

Overview

Field Value
Gene ID LotjaGi2g1v0446800
Transcript ID LotjaGi2g1v0446800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|P51083|CHS1_TRISU Chalcone synthase 1; TrEMBL-Plants: tr|I3T7A9|I3T7A9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0446800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94139719..94140630) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCACCTTCTCTCGATGCTAGGCAAGACATGGTGGTTGTAGAAGTACCTAGACTAGGCAAAGAAGCTGCTGTCAAGGC TATCAAAGAATGGGGTCAGCCTAAGTCCAAGATTACCCACTTAATCTTTTGCACCACAAGTGGTGTGGATATGCCCGGTG CTGATTATCAACTCACAAAACTCTTAGGTCTTCGCCCGTATGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCA GGTGGCACGGTGCTTCGTTTGGCTAAAGACTTGGCCGAGAACAACAAAGATGCTCGTGTGCTAGTTGTTTGTTCTGAACT CACTGCAGTTACCTTCCGTGGCCCGAGTGACACTCACCTAGACAGCCTTGTCGGGCAAGCATTGTTCGGAGACGGAGCAG CTGCACTCATAGTTGGTTCCGATCCAGTGCCAGAAATTGAGAAGCCTTTATTTGAGCTAGTTTGGACTGCACAGACTATT GCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGTTGGATTGACATTTCATCTCCTTAAAGATGTTCCTGG GATTGTTTCAAAGAACATTGAGAAAGCACTAATTGAGGCCTTCCAACCATTAGGCATATCTGATTACAACTCAATTTTTT GGATTGCACACCCAGGCGGCCCAGCAATTCTGGACCAAGTTGAGCAGAAGTTGAGCTTGAAACCTGAAAAGATGAAAGCC ACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGTGCATGTGTCCTATTCATCTTAGATGAAATGAGAAGGAAATC AGCTCAAGATGGACTCAAAACCACCGGTGAAGGACTTGAATGGGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTG AAACTATTGTTTTGCGTAGTGTGGCTATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0446800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCACCTTCTCTCGATGCTAGGCAAGACATGGTGGTTGTAGAAGTACCTAGACTAGGCAAAGAAGCTGCTGTCAAGGC TATCAAAGAATGGGGTCAGCCTAAGTCCAAGATTACCCACTTAATCTTTTGCACCACAAGTGGTGTGGATATGCCCGGTG CTGATTATCAACTCACAAAACTCTTAGGTCTTCGCCCGTATGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCA GGTGGCACGGTGCTTCGTTTGGCTAAAGACTTGGCCGAGAACAACAAAGATGCTCGTGTGCTAGTTGTTTGTTCTGAACT CACTGCAGTTACCTTCCGTGGCCCGAGTGACACTCACCTAGACAGCCTTGTCGGGCAAGCATTGTTCGGAGACGGAGCAG CTGCACTCATAGTTGGTTCCGATCCAGTGCCAGAAATTGAGAAGCCTTTATTTGAGCTAGTTTGGACTGCACAGACTATT GCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGTTGGATTGACATTTCATCTCCTTAAAGATGTTCCTGG GATTGTTTCAAAGAACATTGAGAAAGCACTAATTGAGGCCTTCCAACCATTAGGCATATCTGATTACAACTCAATTTTTT GGATTGCACACCCAGGCGGCCCAGCAATTCTGGACCAAGTTGAGCAGAAGTTGAGCTTGAAACCTGAAAAGATGAAAGCC ACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGTGCATGTGTCCTATTCATCTTAGATGAAATGAGAAGGAAATC AGCTCAAGATGGACTCAAAACCACCGGTGAAGGACTTGAATGGGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTG AAACTATTGTTTTGCGTAGTGTGGCTATTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0446800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFA GGTVLRLAKDLAENNKDARVLVVCSELTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPLFELVWTAQTI APDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIEKALIEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLSLKPEKMKA TREVLSEYGNMSSACVLFILDEMRRKSAQDGLKTTGEGLEWGVLFGFGPGLTIETIVLRSVAI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00831
1 298 298 4.84914E-142 –
PANTHER
PTHR11877:SF62
1 302 302 9.0E-205 –
Pfam
PF00195
1 142 142 1.3E-77
IPR001099
PANTHER
PTHR11877
1 302 302 9.0E-205
IPR011141
Gene3D
G3DSA:3.40.47.10
1 149 149 4.0E-54
IPR016039
SUPERFAMILY
SSF53901
5 300 296 1.15E-53
IPR016039
ProSitePatterns
PS00441
70 86 17 -
IPR018088
Gene3D
G3DSA:3.40.47.10
150 303 154 1.2E-56
IPR016039
Pfam
PF02797
152 301 150 1.1E-70
IPR012328

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016746
Molecular function Transferase activity, transferring acyl groups Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
Subterm of
GO:0016747
Molecular function Transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0446800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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