Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0449300.7

Overview

Field Value
Gene ID LotjaGi2g1v0449300
Transcript ID LotjaGi2g1v0449300.7
Related isoforms 9
Lotus japonicus genome version Gifu v1.2
Description Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|P30075|CHS4_MEDSA Chalcone synthase 4; TrEMBL-Plants: tr|I3T7A9|I3T7A9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0449300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94297644..94304291) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTCACTAATTGTTGAATGAACAAACAAACTCCAATCACCTTCATTTCCCCATCCACCCACCCACCTTCACTTCGCAC ACATATAAAAACCTATCTCCCCACCCAAGTTTCCACCACAACTCTCATACAACATCTAGTACTGCAACTAAGTGTATCTT GAGAGCTCAATTTTGCAGTGCTTCATTTGTAATCCAGATTTCTATCATTCCCAAGAAACTTAAAGATGGTGAGTGTAGCT GAGATTCGCAAGGCTCAAAGAGCTGAAGGCCCAGCAACCATCTTCGCTATTGGCACCGCAAATCCTCCAAACTGTGTTGA TCAAAGCACATATCCTGATTTCTACTTCAGAGTCACTAACAGTGAGCACAAAACAGAGCTCAAGGAGAAATTTCAGCGCA TGTGTAAGCATTCTTTTCTTGGTCTCTCCATTTTTTTCTATATAACATTCATTTACATTGCCAGACTAGTCATTATCAGA TTGATTTTATTGTACTAATGTTGTTTCTTTATAATTGATTTCAGGTGACAAGTCTATGATCAAGAAGAGATATATGCACT TGACTGAAGATCTTTTGAAAGAGAACCCGAACATGTGCGCTTATATGGCACCTTCTCTGGATGCTAGGCAAGACATGGTG GTTGTAGAAGTACCTAGACTAGGCAAAGAAGCTGCTGTCAAGGCTATCAAAGAATGGGGTCAGCCTAAGTCCAAGATTAC CCACTTAATCTTCTGCACCACAAGTGGTGTAGACATGCCCGGTGCTGATTACCAACTCACCAAACTCTTAGGTCTTCGCC CTTATGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGACTTGGCT GAGAACAACAAAGGTGCCCGTGTCCTAGTTGTTTGTTCTGAACTTACTGCAGTTACCTTCCGTGGCCCTAGTGACACTCA CCTAGACAGCCTTGTTGGGCAAGCTTTGTTCGGAGACGGAGCAGCTGCACTCATTGTTGGTTCCGATCCAGTGCCAGAAG TTGAGAAACCTTTGTTTGAGCTAGTTTGGACTGCACAAACTATTGCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTT CGGGAAGTTGGATTGACCTTTCATCTCCTTAAAGATGTCCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTAATTGA GGCCTTCCAACCATTAGGCATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTCTTGACC AAGTTGAGCAGAAGTTGGCCTTGAAACCTGAAAAGATGAGGGCCACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCA AGTGCATGTGTCCTTTTCATCTTAGATGAAATGAGAAAGAAATCAGCTCAAAATGGACTCAAAACCACTGGTGAAGGACT GGAATGGGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTGAAACAGTTGTTTTGCGTAGTGTGGCTATTTAATATG CTTGATTATTTGATTATTTTGTAACACTCACAAACTCACTAGATTTTGTATCTATGAGAAAGAAAATAAGCTCATATTGA GTTTGATTATGTATGTTCAAATTAAAATAATGAATGACTAATTGCTTTTATTTGTTTGAATGAATACTTTAAAGCTAAAA GATAAGTTATCTGAGGGATTATCACTGTAATCTCATATTGGCCAGCTCTTCTAATCATTCTCTAGGTAATAATTCTCACC CGCTTGCGTCAGTTCTCTCATATGATCAGTGTTCCCCCTGTTTATAGAAGTTTTTGGTGCTCTATTACAACTAACATTGG GCCAAGATCTTATAAAGAGGTAGAACTATGAACAAGGTATATTAATGGAGCTTTAAGGTTTGTATGAGCAAGCCATATTA ATGAATCTTTCTATGAGTTGTTCTCTCATGAAAGGTGGAATTATGAGCAAGGTATATTATGAGCAAGTTTTTGTTCCCTC CTTTAAAATTTTCAAATTACATGAATGGAGCTTTGTTTTCTGTTAGCTAGTGGTTTCAAGGATTTTTTTTGTTGCGTCAA TTTAACAAACGTAGAACCAAAAGTCCTGAAGCATTGTTTTCAGATCACCAGTGTCTACTCCATGTACTCCTTCACTTCGC TTGCAAGCTGATCAAGGGCAACCTCTTTCAGATCCTACAGCCTACAGAAGATTGGTTCACGCCTTCTTTATTTAACTACA ACTCGGCCAGACATGAATTTTGCAGTTCAACAGTTGTCACAGTTTATTTTCAATCCTATGGTTTCTCATCATGAGGCAGC TCTTCGGGTTCTAAGATACATCAAGAAATCTCTTGCTTCTGGTTTATTTTTCTCTGCTTATTCTACAATTTTGCTGGCTT TGCTTATTCAGACTGGGCTTGTTTCCCTGATACAAGGAAATCTACAACAGGTTATTGTGTTTTCTTAGCTAGTCTTACTT GTGAAATACAATGGCATCCTAATGTTCTTCATGTTGATTTTTCTCCATGCTTCTATTTATTGTGATAAAAAGTGATCAGT CATATACCTTACTCATAATTCCACCTTTCATGAGAGGACAAAACACATAGAAAGTGATTAGCATATAATTCGTGAGAAGG TTCAATCTGGCTTAATTCAGTAGTTAGTGGCATGTTGGTTATTAGAGAACTTGTAGTGTGTTATATAAAGTAGTTTTATG TTTTCATTCTCTTGACTGTTGTATTGAAGTCTTCATTCTGCAATTTGAAGTCTTCACTTACATTGTGTATAAAAGCTACT CTATGAACAATTCATCATTGAGTTCAATAAATATTCAATCATTTAACTTTGTGACGGAAACTAATTCGTTACAAAATCCT AGCATAATATAAGGAAAAGGTGACGGAATGTGGGAAGAGAATTATCCGTCACAAAAAATCCGTTGCTTGAAATTGCGACG GACATTTCCCTCTCTAAATTCCGTCGTTAAGTCTTCTCTTATTATTCACTAGAATTTTGTGACGTTTAAACTTCGTCGCA AATAATTTTCCGTCGCTAAATTATTTGCGACGGAATTTCTATATCCATATTCCGTCACTATTTCATTTAATATCATATGC TAGGACTTTGTGACGGATTTTTCCGTCACTAAAAAAGAAAGTAAAAAAAAAAAGAGGCATCACCACTGGTGGCGTTTTAT ACTAATTTCGTAATTAAAAAAAATTGCACTACTTTAATAATTATTTGTATAAAGCACACTGCATGTAAAATAACCAAATT AGAAATAAACACACACATAATATAATATTCATCATAAGATAGAAATTTCACAATAAACTTTGGTAAGCCCAAAACGATGT AAAATAAGACAACAACATGTTCCCTAAAACTAAGCTTCAGGAATTATGTTTAGATTACTCACCAACAATCTCAACATGCC CCCAAAATCACATTCCAAACCATCAAATTCGTTGTTTGCCATTTAATTTGCCCGAAATACTGAATGAAAAATCACAAAAT TCTATAAGTGTGAAAAATTTGCCAAACAAAAGAATCGAAACCGTGTAATTGAGTGAAACTAACCTTAATAAAAGTTAATA ATGGTAATTAACTTTTTACAAAAAAAATATTATTTTAGAATAATGTATCATGGTGTATATATCATGGTATATTATTATTA TTAATTATTTTTATAATTATTTTCAAATATAGAGTGAGGGTATTTTGGTCAAGTCACATAAAATATCTCTTCTCCTCAAG TTTTCTAGCAAAACAATTTGTCTAAGCCTCAGCCTAATTTTTTTTCTCTCCGTATTTTCTTATGTACTAAGAGGAAGAAA AATTGTGTAATGTTTGTTCTCTTTGAGACATTTTCTATTCTCTTCCTATTTTCCTTTTCAAATGAAGCATTAAATTATCA AACCAAACGATGGGATGATTTGTTTTGCATATTTTCTTTCCTTTTTCCTCTCCCTCACTAAAACCAAAGGGAGCCTAATT CTGATTAGGTCTAATGGTGGTAGGTGACCCGTGACCCCAAGCCTCCAACTGTCCAACCTTTGACCAATTCATAATTCAGC TACTCACATCATTGAAATTTGAAACTTTAAAAAATGAGAAAGAATACTCATTCACTTGGTTACAAAGAGAAAAAGTTGTG CCTTAATTTAATTGGATGATAATTTGGTCCTGAGACTGCATGTCTGCATCTACGTCTTTTTTCTTGTATTTGCATCAATA ACATACAAATAAAATAAGGACATAAAAGGGAGTGGTTAGTGTAATAAAATAAAATAAAAATTCTCAATAATTAAATTTGT TGAAAATCCCTATCCATATAGTATAACACAACACATCAAGAATTTTGCAATACAAATATTTTAAAATTAAATCAGATAGA AAGTGATTAATTTAAGTGATACATACTTAGTTCCATTTAAACAATTTCAAATATCACGTTTGAATGTGGTGGATGGACCA CTCTACAACCACAAAAGTGAGGTGTCTATTAATGGTCGACACACAGGCAGAAAGAGCAACGTAGACGTGGCAAAGCTAAT CATTGTTGTTTAGCAACTTGTCAAAACAAGAAGATATGAGGTCAATTACGAAGCACACTACCCCTAGGGCAACAAGCGTT GGAAATTAACTCAAAACAACTTATAGATAGATTATAAGTTATTTGAATAAGTTCACTTAAATACTCACATTAACATTTAT GCTTTAAGATAAGCTATTTAAAACACTCTCATATTCCAAGTTTAACCACATAAAGACTATTTTATATTTGGGTTGTGATG CAGACGAGCTAGATCACAGTAAAAGTGTAGATACAAGTTTGAAATATGAAAAAATCATCTATTGGTAATTGGTAGAGATT GTCATCATTTTTAGAATGAGATTACTGTTGCCAAGTATAGTCGGAACACCATCAAAGATGTAAAGACTAAAATGACGAGT TAACTTCGTAAGCTGCCGTTAGATTGAGCAGCCTAGCAAGACCTTGACTAAACTGCCATAGTCCCTGGTTTGGTGACGAA GCATTCAGCCAGCCATAGACCATATCACTATATATTATTGAACATTGAAAATGTTAGTCAGCACGTGAGCTTCAGCTACC ACCCTCCAATTCCCTTTCCCCATCCACCACCTTCCCACACAACACATGGATATAAATTGCTAGTTCCCCTCATTACTTTC CACAACCACAACTCTCTTACAGTACCAACAACAACCACTGCAACTAGAAAACTTCAGAAGAAAAGATGGTGAGTGTAGCT GAGATTCGTAAGGCCCAGAGGGCTGAAGGCCCAGCAACCATCCTGGCTATTGGCACTGCAAATCCACCAAACTGTGTCGA CCAAAGCACTTATCCTGATTTCTACTTCAAAATCACCAACAGCGAACACATGACAGAGCTTAAGGAGAAGTTTCAGCGCA TGTGTAAGCAATCTTTTTGTCTTTTTTAATCATCATTTATCAATTCCTAGACGTATCAGATTTGTAAAAGTTACTCACTC TTCAATCGGTCCATTAGAGTATAGACTTCAAAGAAATATATATACTACTTCTTAACAATACAATTTGCAAGACTAGTCAT TATCAAATTGATTTTGGTGTTGTAAACTGATGTTTTTTCTTTATAATTGATTTCAGGTGACAAGTCCATGATCAAGAAGA GATACATGTACTTGAATGAAGAAATTTTGAAAGAGAACCCCAACCTTTGTGCTTATATGGCACCATCTTTGGATGCTAGG CAGGACATGGTGGTGGTAGAGGTACCAAGGTTAGGGAAAGAAGCTGCAACAAAGGCTATAAAAGAATGGGGTCAACCAAA ATCCAAGATTACCCACTTAATCTTCTGCACCACAAGTGGTGTAGACATGCCTGGTGCTGATTATCAACTCACCAAACTCT TGGGTCTTCGCCCATCTGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTTCGTTTGGCT AAAGACTTGGCTGAGAACAACAAAGGTGCACGTGTGCTAGTTGTTTGTTCTGAGATTACTGCGGTTACATTCCGTGGCCC TAATGACACTCACCTAGACAGCCTTGTGGGGCAAGCTTTGTTCGGAGACGGAGCAGCTGCGGTCATTGTTGGTTCTGATC CAGTGCCTGAAATTGAGAAACCTTTGTTTGAACTAGTTTGGACTGCACAAACTATTGCTCCAGATAGTGACGGAGCCATT GATGGTCACCTTCGTGAAGTTGGATTGACGTTCCATCTCCTTAAAGATGTTCCTGGGATTGTTTCAAAAAACATTGATAA AGCACTAGTTGAGGCCTTCCAACCATTGAACATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAG CAATTCTTGACCAAGTTGAGCAGAAGTTGGGTTTGAAACCTGAAAAGATGAAGGCCACTAGAAATGTGCTTAGTGATTAC GGTAACATGTCAAGTGCATGTGTCCTATTCATCTTAGATGAAATGAGAAAGAAGTCGGCTGAAAATGGACTTAAAACCAC AGGTGAAGGACTTGAATGGGGTGTGTTGTTTGGTTTTGGACCTGGACTTACCATTGAAACGGTTGTTCTGCGCAGTGTGG CTATATAA 

CDS sequence (LotjaGi2g1v0449300.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAGTGTAGCTGAGATTCGCAAGGCTCAAAGAGCTGAAGGCCCAGCAACCATCTTCGCTATTGGCACCGCAAATCC TCCAAACTGTGTTGATCAAAGCACATATCCTGATTTCTACTTCAGAGTCACTAACAGTGAGCACAAAACAGAGCTCAAGG AGAAATTTCAGCGCATGTGTGACAAGTCTATGATCAAGAAGAGATATATGCACTTGACTGAAGATCTTTTGAAAGAGAAC CCGAACATGTGCGCTTATATGGCACCTTCTCTGGATGCTAGGCAAGACATGGTGGTTGTAGAAGTACCTAGACTAGGCAA AGAAGCTGCTGTCAAGGCTATCAAAGAATGGGGTCAGCCTAAGTCCAAGATTACCCACTTAATCTTCTGCACCACAAGTG GTGTAGACATGCCCGGTGCTGATTACCAACTCACCAAACTCTTAGGTCTTCGCCCTTATGTGAAAAGGTACATGATGTAC CAACAAGGGTGCTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGACTTGGCTGAGAACAACAAAGGTGCCCGTGTCCT AGTTGTTTGTTCTGAACTTACTGCAGTTACCTTCCGTGGCCCTAGTGACACTCACCTAGACAGCCTTGTTGGGCAAGCTT TGTTCGGAGACGGAGCAGCTGCACTCATTGTTGGTTCCGATCCAGTGCCAGAAGTTGAGAAACCTTTGTTTGAGCTAGTT TGGACTGCACAAACTATTGCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGGGAAGTTGGATTGACCTTTCATCT CCTTAAAGATGTCCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTAATTGAGGCCTTCCAACCATTAGGCATATCTG ATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTCTTGACCAAGTTGAGCAGAAGTTGGCCTTGAAA CCTGAAAAGATGAGGGCCACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGTGCATGTGTCCTTTTCATCTTAGA TGAAATGAGAAAGAAATCAGCTCAAAATGGACTCAAAACCACTGGTGAAGGACTGGAATGGGGTGTGTTATTCGGTTTTG GACCTGGACTTACCATTGAAACAGTTGTTTTGCGTAGTGTGGCTATTTATGTAGCTGAGATTCGTAAGGCCCAGAGGGCT GAAGGCCCAGCAACCATCCTGGCTATTGGCACTGCAAATCCACCAAACTGTGTCGACCAAAGCACTTATCCTGATTTCTA CTTCAAAATCACCAACAGCGAACACATGACAGAGCTTAAGGAGAAGTTTCAGCGTGACAAGTCCATGATCAAGAAGAGAT ACATGTACTTGAATGAAGAAATTTTGAAAGAGAACCCCAACCTTTGTGCTTATATGGCACCATCTTTGGATGCTAGGCAG GACATGGTGGTGGTAGAGGTACCAAGGTTAGGGAAAGAAGCTGCAACAAAGGCTATAAAAGAATGGGGTCAACCAAAATC CAAGATTACCCACTTAATCTTCTGCACCACAAGTGGTGTAGACATGCCTGGTGCTGATTATCAACTCACCAAACTCTTGG GTCTTCGCCCATCTGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAA GACTTGGCTGAGAACAACAAAGGTGCACGTGTGCTAGTTGTTTGTTCTGAGATTACTGCGGTTACATTCCGTGGCCCTAA TGACACTCACCTAGACAGCCTTGTGGGGCAAGCTTTGTTCGGAGACGGAGCAGCTGCGGTCATTGTTGGTTCTGATCCAG TGCCTGAAATTGAGAAACCTTTGTTTGAACTAGTTTGGACTGCACAAACTATTGCTCCAGATAGTGACGGAGCCATTGAT GGTCACCTTCGTGAAGTTGGATTGACGTTCCATCTCCTTAAAGATGTTCCTGGGATTGTTTCAAAAAACATTGATAAAGC ACTAGTTGAGGCCTTCCAACCATTGAACATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAA TTCTTGACCAAGTTGAGCAGAAGTTGGGTTTGAAACCTGAAAAGATGAAGGCCACTAGAAATGTGCTTAGTGATTACGGT AACATGTCAAGTGCATGTGTCCTATTCATCTTAGATGAAATGAGAAAGAAGTCGGCTGAAAATGGACTTAAAACCACAGG TGAAGGACTTGAATGGGGTGTGTTGTTTGGTTTTGGACCTGGACTTACCATTGAAACGGTTGTTCTGCGCAGTGTGGCTA TATAA 

Protein sequence (LotjaGi2g1v0449300.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSVAEIRKAQRAEGPATIFAIGTANPPNCVDQSTYPDFYFRVTNSEHKTELKEKFQRMCDKSMIKKRYMHLTEDLLKEN PNMCAYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMY QQGCFAGGTVLRLAKDLAENNKGARVLVVCSELTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEVEKPLFELV WTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIEKALIEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALK PEKMRATREVLSEYGNMSSACVLFILDEMRKKSAQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAIYVAEIRKAQRA EGPATILAIGTANPPNCVDQSTYPDFYFKITNSEHMTELKEKFQRDKSMIKKRYMYLNEEILKENPNLCAYMAPSLDARQ DMVVVEVPRLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAK DLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAAAVIVGSDPVPEIEKPLFELVWTAQTIAPDSDGAID GHLREVGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATRNVLSDYG NMSSACVLFILDEMRKKSAENGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVAI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 235 235 4.6E-92
SUPERFAMILY 1 233 233 1.15E-79
PANTHER 2 388 387 0.0
PANTHER 2 388 387 0.0
Pfam 6 228 223 8.9E-121
CDD 16 384 369 5.36546E-169
ProSitePatterns 156 172 17 -
SUPERFAMILY 235 387 153 7.04E-51
Gene3D 236 386 151 7.2E-56
Pfam 238 387 150 2.2E-70
Gene3D 387 620 234 9.3E-89
PANTHER 389 773 385 0.0
PANTHER 389 773 385 0.0
SUPERFAMILY 390 618 229 2.61E-76
Pfam 393 613 221 1.3E-117
CDD 403 769 367 7.6818E-165
ProSitePatterns 541 557 17 -
SUPERFAMILY 620 771 152 1.15E-50
Gene3D 621 774 154 1.3E-54
Pfam 623 772 150 9.2E-69

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Molecular function Transferase activity, transferring acyl groups Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
Molecular function Transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0449300.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…