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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0450500 |
| Transcript ID | LotjaGi2g1v0450500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TOM1-like protein 2; TAIR: AT5G16880.1 Target of Myb protein 1; Swiss-Prot: sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2; TrEMBL-Plants: tr|A0A151SD01|A0A151SD01_CAJCA TOM1-like protein 2; Found in the gene: LotjaGi2g1v0450500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94382532..94386661) extracted from Lotus japonicus Gifu genome v1.2.
CCCTGATTCGTATTCTAATATAATCATTGTGACTTAGAGCTCGTTTGAAAAATATGATTTGCTTGGAGGAGCAAAAGCAT ACATCACAAGACATAGACTCTTTACCGAGTCCATACGCGTTTGTTTGTTGTTTGTTTCTTCCTTTTCCTTTTTCCTTTTC CACCAAACCCTTCTTCTTCTTCTTCTTCCTCAACTCCTCCACTCACTCGAGGTGGGACTGAACGAAACGATGACTGACAA CAATCTGATGGAGAAAGTGAACGCTCTCAGCGAGCGACTGAAGATCAGCGGCACGGAGGTTGGCCGTAAGATGACCGCCG GAATGACCTCCATGAGCTTCAAGGTCAAGGAGTTTTTCCAAGGAGGACCAAACCAGGTCGACAAGCTCGTCGAAGACGCC ACCTCCGAAGCCCTCGATGAACCCGATTGGGCCACCAATCTCCACCTCTGCGACCTCATCAACACCGATAAGGTCAACAG CATCGACCTCATCCGCGCTATCAAGAAGCGGATCATGGACAAAAGCCCTAGGGTTCAGTACCTCGCACTCGTCCTCCTTG AAACCTGTGTCAAGAACTGCGAGAAGGCTTTCTCTGAAGTCGCCGCCGAGAGGGTGCTCGATGAGATGGTCCGCCTCATC GACGATCCCCACACCGTCGTCAACAACCGCAACAAGGCTCTCATCATGATCGAAGCTTGGGGTGAATCCACCGGCGAGCT TCGTTATCTTCCTGTATTTGAAGAAACTTACAAGGTTTGTTCGTTTGATCCTTCAATTGAATGAATTCCACTTCTAATTT AGCTTAATTTGTTGATTTTCTGATTTTTTTTTGTGAATTTGTGTAGAGTTTGAAATCGAGGGGGATTCGGTTCCCTGGTC GTGACAATGAAAGCTTGGCTCCGATTTTCACTCCTCCGCCATCTGTTTCTGTTCCGGAGCAGCAGCAGGATGTGGAGCAG TTTCAGTTGGAGCAGTTTCAGCATGAGGTTCCTGTGCTGAGTTTTACACCTGAGCAGACAAAGGAAGCATTTGATGTTGC CAGAAATAGCATTGAGCTACTTTCTACTGTGTTATCATCTTCACCGCAACAAGATGTTTTGCAGGTCTTTCTTTTTATTA CTGTGCCGTTTTCAATGCTCTACTTTGATTTTGACTGTTAGTAATGGATGCTGTGGACTGAAATGTGTTACTTGCTGATA GAATAGAATATGATTTGCTCTTGCAGCTATTGGGTGTCGCCTGTATGTTGCAGTGGCCGTTTTGTCATTAAATTTTAGTT TAGGGAAAAAAACTACTATGAAGTGAAGTTGCCAGTAAAGTGAGGAAGAAGTAAGGGTTTTTTATGGTTAGATTTTTGTA GGCTAAGATTAGGATGCTCATTAAATTAGATCAATGGTGGATATAGCTTGAAGTACTCAATGTAGAGACAAACTCACTTT AGATGGTGATGATCCCTTACTTTGTATACACTTGATTGTGGCCACTGTTTTGGCCTATGGTACTGATCCCTTACTTTGTG CTTTTAGTATATGCACTTAGTTAGCAGAGGTTATGAAGTATGTAAACAATGGTGGATGTAGCTTTACCTACTCAATTTAG AGACAAAATCACTCAAGAGTTCGTTTGAACGCGGACCAAAGAGCACTTATTCGAGCTTATTTAGTGCATTGTTTTAGTTG AGGAGCTCCAATAAGTACTCTTTGGTATGTATCCAAACAGGCTCTACACTTGACTATGACCACTGTTTGGCCTATGGTTT TGTGCTTATTGTATATGCACTTAGTTAGCAGATCTTATAAAGTATGTACACTATGGTGTAAAACTCTCTACTCTAGTTTT ATGATGTTAAATTGAATTTACTCTAATTTTTGGGTCATTTGACAAGTAACAGCATCACTTAAGAGTTCAATGGGAGAAGG ATTTGTTTTTAAACTTTATTAGGTCTTTGTTGCAAACCCTTTGCTTTTTGTAATTACTAATTATCCTTTTTTTTTGAAAG TAATTACTAATTATCCTTAGTTCCTTACAAGTCGCACTAGTTAGTTGACATTGAATGTCTTAAAACTTAAAAAACTTGTC AGTAGGCCCTGACCAGGTGGCCCTTTCATGATCTTGAGTTGTATAGTCTACAAGACAATACATGGATATTGTTACATAGA AATTCTTCAGTGTCGTCTAAATTAAGAACCTTGTATTTATTTTCCGTTTAGATGATTTTATTTTTGAAATATGTGAACGT AAAAAATTGTTCTTAAAAAATTACACCCTTGACAATTGGCCTTCCTTTGAGGCAGTTGATGAAACGAATTACGATATTCT CTGTTACGATAGTATTAATATTTGTTTTGAAGAAAAATGGCCCACTGATAATTGCTATGTCTTTGTATAAATTTTTTATT GATAACAACCACACCTTCTCTGGTTTCTGGTACTGTGGTTGCCCCGCTGACCAGGGTAGTATACTAAGGGCTAATGTTTA TATGGGTTGGTCCTATGGGCTTATTAAGATCTAATGATGGGTGTTGAAGTGAGATATGCTATTTGTTCTTCATTCACTTA AAGTGTACAACAGCCATGCAAGAGCTTATCCAGTTATCCTAGTTTCTTTAAGAACGCAGTCAATTTCAATTTGGCATGTG GTCATTGCTAAATGCTAACACGGTCATGACCTTGTATATTTTCTTTCTGTACATTCATCCCACCCCACCCCCAAAATAGA AACTGTTTTGCATTGTTTTGAGCGCTATACTGTATTCCCTTGTAAGTTCCTCAAATGAGGAGTGTCAAGTTTAGCCATGC CATTATTGGTGAAGAAACGTCTTATATCAGGCATCAGTGAGTTACTGAAATAGAAATGTAATATTTTCTTCAATCTGCAG GATGATTTGACCACCACACTTGTACAGCAGTGTCGTCGCTCCCAATCTACTGTCCAGCGTATTGTTGAAACTTCCGGGGA CAATGAAGCACTACTTTTTGAGGCCTTGAATGTTAATGATGAGATTCAGAAGGTCCTCGACAAGTACGAAGAGGTGAAGA AGCCTACAACTGCTCCCCTTCAACCTGAACCAGCTATGATACCTGTTGCCGTTGAGCCAGATGAGTCGCCTCGACATACT AAAGAGGATGCCTTGATCAGAAAGCCGGCCGGATCAAGAACTGTTGTCCAGGGAGGGAGCAATGATGACATGATGGATGA TCTTGATGAGATGATTTTTGGGAAAAAAAGTGGCGATGCATCAGATGCAGGGCATGACACAAAGAAGCAGCAGTCTTCAA AAGATGATCTCATTTCCTTCTAAACTACACTGTTAATTGACCTTGAACTACCTTTTAATGTCTTGCTACCTATAAACGTA GTTGTTGATTGTGAACTTTGTTCAGAATTTCAGATTGCTCGTTCAATGATTGTTATTGTGCACTTTCTGTGCAATTTATG TTTGAGATATGGTATAGAAGTTCTTGACAAGGTATAGATGGGAGACTTTCTGTAAAATCAATGGGTTTCATTCATATTAT TCAGATGACTGGGATTCTGGTTTTTACATATGGAAGCACGTTTAGAACTCAACTCATCTACCTTCTCTCCTGCTGAGCTC TAAGATTCGAATCATTTTCTCCTTCTCGCATGTTTTTTTTTTTTTCGTGTTCTAGTTTTTCTTGGTTTGGTATTTGTCAA TTGCCACCATGTTCAACTACCTGAGCCACTACTATTTGGCATTTGATAAAGTTTTCTTGCCATTTATATGCAGCTCAATT GTATTAATATATTGTTCAGGTTTTCTTCTTCTTCTTTTCGATCGATTATATTGTTGAGGTTAAAAGCAAAGGGTGCTTCA TTGGAACAGTTACACTAAACACCTGAAATTAAGCATACATACCAATGTGAAGAAGTAATCCATCATACGTGCTTCATCCT CTGAGACTGAGCATCTTGATTGCTCGATGAAGAATGCTTCATTTATAAAAGTTGTATTTAATTCCTTTAGAGACATCATT TCAGAAGCATGTGACTACGCACGTTTCATACCAGTGAATATCACAAATCACATTAATCATTCATTTCATATGAAAAAGTG TGTGAATAATGCAGATAAAGTTGGCAAACTGAATAAGCAATGAATAAAAT
CDS sequence (LotjaGi2g1v0450500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGACAACAATCTGATGGAGAAAGTGAACGCTCTCAGCGAGCGACTGAAGATCAGCGGCACGGAGGTTGGCCGTAA GATGACCGCCGGAATGACCTCCATGAGCTTCAAGGTCAAGGAGTTTTTCCAAGGAGGACCAAACCAGGTCGACAAGCTCG TCGAAGACGCCACCTCCGAAGCCCTCGATGAACCCGATTGGGCCACCAATCTCCACCTCTGCGACCTCATCAACACCGAT AAGGTCAACAGCATCGACCTCATCCGCGCTATCAAGAAGCGGATCATGGACAAAAGCCCTAGGGTTCAGTACCTCGCACT CGTCCTCCTTGAAACCTGTGTCAAGAACTGCGAGAAGGCTTTCTCTGAAGTCGCCGCCGAGAGGGTGCTCGATGAGATGG TCCGCCTCATCGACGATCCCCACACCGTCGTCAACAACCGCAACAAGGCTCTCATCATGATCGAAGCTTGGGGTGAATCC ACCGGCGAGCTTCGTTATCTTCCTGTATTTGAAGAAACTTACAAGAGTTTGAAATCGAGGGGGATTCGGTTCCCTGGTCG TGACAATGAAAGCTTGGCTCCGATTTTCACTCCTCCGCCATCTGTTTCTGTTCCGGAGCAGCAGCAGGATGTGGAGCAGT TTCAGTTGGAGCAGTTTCAGCATGAGGTTCCTGTGCTGAGTTTTACACCTGAGCAGACAAAGGAAGCATTTGATGTTGCC AGAAATAGCATTGAGCTACTTTCTACTGTGTTATCATCTTCACCGCAACAAGATGTTTTGCAGGATGATTTGACCACCAC ACTTGTACAGCAGTGTCGTCGCTCCCAATCTACTGTCCAGCGTATTGTTGAAACTTCCGGGGACAATGAAGCACTACTTT TTGAGGCCTTGAATGTTAATGATGAGATTCAGAAGGTCCTCGACAAGTACGAAGAGGTGAAGAAGCCTACAACTGCTCCC CTTCAACCTGAACCAGCTATGATACCTGTTGCCGTTGAGCCAGATGAGTCGCCTCGACATACTAAAGAGGATGCCTTGAT CAGAAAGCCGGCCGGATCAAGAACTGTTGTCCAGGGAGGGAGCAATGATGACATGATGGATGATCTTGATGAGATGATTT TTGGGAAAAAAAGTGGCGATGCATCAGATGCAGGGCATGACACAAAGAAGCAGCAGTCTTCAAAAGATGATCTCATTTCC TTCTAA
Protein sequence (LotjaGi2g1v0450500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDNNLMEKVNALSERLKISGTEVGRKMTAGMTSMSFKVKEFFQGGPNQVDKLVEDATSEALDEPDWATNLHLCDLINTD KVNSIDLIRAIKKRIMDKSPRVQYLALVLLETCVKNCEKAFSEVAAERVLDEMVRLIDDPHTVVNNRNKALIMIEAWGES TGELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPPSVSVPEQQQDVEQFQLEQFQHEVPVLSFTPEQTKEAFDVA RNSIELLSTVLSSSPQQDVLQDDLTTTLVQQCRRSQSTVQRIVETSGDNEALLFEALNVNDEIQKVLDKYEEVKKPTTAP LQPEPAMIPVAVEPDESPRHTKEDALIRKPAGSRTVVQGGSNDDMMDDLDEMIFGKKSGDASDAGHDTKKQQSSKDDLIS F
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 401 | 399 | 2.1E-224 | – | |
| PANTHER | 3 | 401 | 399 | 2.1E-224 | – | |
| PIRSF | 33 | 399 | 367 | 1.9E-110 | ||
| Gene3D | 44 | 203 | 160 | 5.2E-44 | ||
| SUPERFAMILY | 45 | 185 | 141 | 8.37E-41 | ||
| Pfam | 48 | 181 | 134 | 9.4E-28 | ||
| CDD | 50 | 179 | 130 | 2.39757E-57 | – | |
| SMART | 50 | 181 | 132 | 6.6E-33 | ||
| ProSiteProfiles | 57 | 185 | 129 | 38.473 | ||
| SUPERFAMILY | 182 | 315 | 134 | 9.68E-28 | – | |
| ProSiteProfiles | 228 | 315 | 88 | 15.721 | ||
| Gene3D | 228 | 320 | 93 | 1.4E-10 | ||
| CDD | 237 | 312 | 76 | 6.51138E-29 | – | |
| Pfam | 241 | 315 | 75 | 4.3E-18 | ||
| MobiDBLite | 334 | 401 | 68 | - | – | |
| MobiDBLite | 335 | 349 | 15 | - | – | |
| MobiDBLite | 369 | 401 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi2g1v0450500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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