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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0450900 |
| Transcript ID | LotjaGi2g1v0450900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G16770.1 myb domain protein 9; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|Q84PP3|Q84PP3_LOTJA Transcription factor MYB103; Found in the gene: LotjaGi2g1v0450900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94429231..94431543) extracted from Lotus japonicus Gifu genome v1.2.
TGCAGTAATGATGAGAACACCAAGCATTGATGAAAGTGGTATGAAGAAGGGGCCTTGGAGCCAAGAAGAGGATAAGGTAT TAGTGGATTACATTCAGAAACATGGTCATGGGAGTTGGAGAGCCCTTCCTCAGCTTGCAGGGTTGAACAGGTGTGGAAAG AGTTGCAGGCTAAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGGGGGAAATTCTCTGATGAAGAGGAGCAACTCAT CATCAATCTACATGCATCTCTTGGCAATAAGTATTAATCCCCAAACTTTATTATTCACAATATGACTCATTATGGTTTTG GTATTCTACATTTTGGTTTTATTACACTCTTCTCAAACCAGAATCAGTTCTAGTGGGAGAAGCTCTACGAGTAGCTTTCA GTGTGTTTGGTTCTACGTTGGTGGGTCTTGGATAATAATATTGAAGTTTGAATATTATTTTGGAGAATTGATTTCAGTCT CAAAATCAATTCTGCTAGAAGCTAGAAATAGTAACTTCAGCAATGAGCATAATTAATAATAGACTGTACAACTGAGTTTC ACAACTTCACATTTACAAAAATCACTTTTTTTATAAATGTATACAAACATTAATCATTTTCAACTCATTTTTACTACAAT TAGTCTAGCCAAAGTCAATTATGACAACGTTGATCAAAACACAATTTACTAGTCATTTCAAGTTATTGGTCATGGATTGA TAGTTTTCCAAATTGATTGGTATATTTTCAAAAGCAATGCTTACAATGAAAATTATTGTTCACTTTCGTCTAGGACTATT TTGTTAAATTAATCTTGTAGTGTTCATAGCATGTAATTTATTTGATTATTTCCATTGTTGTAGATGGGCAACTATAGCAT CTCATCTTCCAGGGAGGACTGATAATGAGATTAAGAATTTATGGAACACCCATTTGAAGAAAAAGCTTCTGCAAATGGGG TTAGACCCAGTGACTCACTGTCCAAGATCAGATCACATGAACATTCTCAGCAATCTTCAACAGATATTGGCTGCTGCAAA CATTGTCAGCAGTTTCACAAACCCTTGTGACATGATCCATGCTCTGATGCTCCACTCAGATGCCACAAATCTTGCCAAAC TCCACTTGCTGCAGAACATGCTTCAAAACAACAATTTCCAAAACATTTACAATGGTTCTGTTGCTTTTCCTTCTTTGCAT CAAATTCAGCCCAGTTTCCAAAACTTTGAAGCCCCTCAACACTTGAGTGGTGGCAGAGATGATATTAGTAATTACAGGGA ATGTCTAAAGTTTGATGAACAACTTGGTTTGTCGAACATTGCTGACCCAACACCATCAAATTCCCTTCCAAAGCTGGTTT CAGCTTCACCTGAATGTTCCCCAGTTAATCAAGAAGAAAACATGGCAAACCATAAGGAATGGTCTAACTTCGACCCTTCT TCCACCGCCTTTGAGACTTGGGGAGAATTCATGAGTGAAGATACAAGCGAAACTTATTGGAAAGATTTCATGGAGTAAGT GGTCTTAGACATTATTTTTTATTTGCTCTTCACACATTATATCTCTAGCTTCTCTACTTTCTATTTGAAGCATGTGGCAT ACTCATTCATTATCTTTCTATTTTTTATTTATTTGTAGGCAACATTCTAACCAGCCTTGGTCGACAGTCCCATGAAAGAT CACTGCATTTGAGGGTTATATTATGCCAGCAATAATGGGAAGCTACTTAGTTTTCCAAATAATCAATTCTAACGCCTAGA AGCTACCTACATAAGTTTCTGCCCATAACTGATTTTGACTTTTGCAACGAAGGATTTCTGAACATAAACATAAGAAGGCA CCATATGGTATATTAAAATATGAACTTTACACCATGGAGATTGTAATTAATATCACAGGCCACATATCACCCTATGATGT TCACATTCTTGTATAAAATGCAGTAGCAGGCTTTCCTTCTTAAATGCAGTCTTTATATGTTTACAAAACTTATGTGTGAA TGGTTGGAACTGAGACATGATTAAGAAGATGCTTGAAATCCACTTGTGTCTCGGCTTCTTTTTTCCACATAGAGACCTCA GTTGAAACTTAAAGAATGGGCAAAAGTAAGTGAATATACTTGTACTGAAGACATTAAAATATATGTTCTTCATCAAAAAG TTACTTGGACCAGAAAGATGAAACAAACTCAAGTCCAACTTGTATAACAATGCCCTTAGACTATTTGTTTATGCAATAAT TTCCACCTAGCTTGACAATAAATAAGCAACAACGAAAATCAAATGGTATAATTTACTCAAAAAGTGAAGTTAG
CDS sequence (LotjaGi2g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGAACACCAAGCATTGATGAAAGTGGTATGAAGAAGGGGCCTTGGAGCCAAGAAGAGGATAAGGTATTAGTGGA TTACATTCAGAAACATGGTCATGGGAGTTGGAGAGCCCTTCCTCAGCTTGCAGGGTTGAACAGGTGTGGAAAGAGTTGCA GGCTAAGGTGGACTAATTATCTGAGGCCTGATATCAAGAGGGGGAAATTCTCTGATGAAGAGGAGCAACTCATCATCAAT CTACATGCATCTCTTGGCAATAAATGGGCAACTATAGCATCTCATCTTCCAGGGAGGACTGATAATGAGATTAAGAATTT ATGGAACACCCATTTGAAGAAAAAGCTTCTGCAAATGGGGTTAGACCCAGTGACTCACTGTCCAAGATCAGATCACATGA ACATTCTCAGCAATCTTCAACAGATATTGGCTGCTGCAAACATTGTCAGCAGTTTCACAAACCCTTGTGACATGATCCAT GCTCTGATGCTCCACTCAGATGCCACAAATCTTGCCAAACTCCACTTGCTGCAGAACATGCTTCAAAACAACAATTTCCA AAACATTTACAATGGTTCTGTTGCTTTTCCTTCTTTGCATCAAATTCAGCCCAGTTTCCAAAACTTTGAAGCCCCTCAAC ACTTGAGTGGTGGCAGAGATGATATTAGTAATTACAGGGAATGTCTAAAGTTTGATGAACAACTTGGTTTGTCGAACATT GCTGACCCAACACCATCAAATTCCCTTCCAAAGCTGGTTTCAGCTTCACCTGAATGTTCCCCAGTTAATCAAGAAGAAAA CATGGCAAACCATAAGGAATGGTCTAACTTCGACCCTTCTTCCACCGCCTTTGAGACTTGGGGAGAATTCATGAGTGAAG ATACAAGCGAAACTTATTGGAAAGATTTCATGGAGCAACATTCTAACCAGCCTTGGTCGACAGTCCCATGA
Protein sequence (LotjaGi2g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRTPSIDESGMKKGPWSQEEDKVLVDYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIIN LHASLGNKWATIASHLPGRTDNEIKNLWNTHLKKKLLQMGLDPVTHCPRSDHMNILSNLQQILAAANIVSSFTNPCDMIH ALMLHSDATNLAKLHLLQNMLQNNNFQNIYNGSVAFPSLHQIQPSFQNFEAPQHLSGGRDDISNYRECLKFDEQLGLSNI ADPTPSNSLPKLVSASPECSPVNQEENMANHKEWSNFDPSSTAFETWGEFMSEDTSETYWKDFMEQHSNQPWSTVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 248 | 248 | 2.1E-95 | – | |
| PANTHER | 1 | 248 | 248 | 2.1E-95 | ||
| ProSiteProfiles | 9 | 61 | 53 | 15.769 | ||
| SUPERFAMILY | 11 | 108 | 98 | 3.24E-31 | ||
| Gene3D | 12 | 67 | 56 | 1.9E-19 | – | |
| SMART | 13 | 63 | 51 | 4.2E-14 | ||
| Pfam | 14 | 61 | 48 | 8.8E-16 | ||
| CDD | 16 | 61 | 46 | 5.53656E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.887 | ||
| SMART | 66 | 114 | 49 | 4.3E-15 | ||
| Pfam | 67 | 112 | 46 | 1.1E-14 | ||
| Gene3D | 69 | 116 | 48 | 1.2E-20 | – | |
| CDD | 69 | 112 | 44 | 1.58672E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0450900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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