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LotjaGi2g1v0451900.3

Overview

Field Value
Gene ID LotjaGi2g1v0451900
Transcript ID LotjaGi2g1v0451900.3
Related isoforms 12
Lotus japonicus genome version Gifu v1.2
Description Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|P30075|CHS4_MEDSA Chalcone synthase 4; TrEMBL-Plants: tr|I3S104|I3S104_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0451900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94506995..94514632) extracted from Lotus japonicus Gifu genome v1.2.

CCATCTACGTATCATTAGAGAAAGATAGAAATAAAAGAGCGAGAAATGAGAGATATGATTAGAAAGAAAAAAAATAGATA TATAAAGAAAAAAGAGATGTATGAATATATGAAAAATATATCTGAAATCCAGTGATATGGTGCACGGGCTTAGAACTTAA AAGTCATCCGAGTATTTCCCACCAAACATTGGTATGCTGGTTAGACTGAGCTGCCAAGCCAGACACATTGACCAAACTGC CATGATCCCTGGTTTGGTGACGAAGCATTCATTCAGCCAGCCATAGACCATATCACTATATATTATTGAACATTGAAAAT GTTAGTCAGCACGTGAGTTTCAGCTACCACCCTCCAATTCCCTTTCTCCATCCACCTTCCCACACAACACAAACACATGC ATATAAATTGCTACTTCCCCTCATTACTTTCCACAACCACAACTCTCTTACAGTACCAACAACAACCACTGCAACTAGAA AACTTCAGAAGAAAAGATGGTGAGTGTAGCTGAGATTCGTAAGGCCCAGAGGGCTGAAGGCCCAGCAACCATCCTGGCTA TTGGCACTGCAAATCCACCAAACTGTGTTGACCAAAGCACTTATCCTGATTTCTACTTCAAAATCACCAACAGTGAACAC ATGACAGAGCTTAAGGAGAAGTTTCAGCGCATGTGTAAGCAATTTTTTTGTCTTTTTTAATCATCATTTATCAATTCCTA GACGTATCAGATTTGTAAAAGTTACTCACTCTTCAATCGGTCCATTAGAGTATAGACTTCAAAGAAATATATATACTACT TCTTAACAATACAATTTGCAAGACTAGTCATTATCAAATTGATTTTCGTGTTGTCTTGAGTTTATTGTACTAATGTTGTT TCTTTATAATTGATTTCAGGTGACAAGTCTATGATCAAGAAGAGATATATGTACTTGAATGAAGAAATTTTGAAAGAGAA CCCCAACCTTTGTGCTTATATGGCACCATCTTTGGATGCTAGGCAGGACATGGTGGTGGTAGAGGTACCAAGGTTAGGGA AAGAAGCTGCAACAAAGGCTATAAAAGAATGGGGCCAGCCAAAATCTAAGATTACTCACTTAATCTTTTGCACCACAAGT GGTGTAGACATGCCTGGTGCTGATTATCAACTCACCAAACTCTTGGGTCTTCGCCCATCTGTGAAAAGGTACATGATGTA CCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAAGACTTGGCTGAGAACAACAAAGGTGCACGTGTGC TAGTTGTTTGTTCTGAGATTACTGCGGTTACATTTCGTGGCCCTAATGACACTCACCTAGACAGCCTTGTGGGGCAAGCT TTGTTCGGAGACGGAGCAGCTGCGGTCATTGTTGGTTCTGATCCAGTGCCTGAAATTGAGAAACCTTTGTTTGAACTAGT TTGGACTGCACAAACTATTGCTCCAGATAGTGACGGAGCCATCGATGGTCACCTTCGTGAAGTTGGATTGACGTTCCATC TCCTTAAAGATGTCCCTGGGATTGTTTCAAAAAACATTGATAAAGCACTAGTTGAGGCCTTCCAACCATTGAACATATCT GATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCGGCAATTCTTGACCAAGTTGAGCAGAAGTTGGGTTTGAA ACCTGAAAAGATGAAGGCCACTAGAGAAGTCCTAAGTGAATACGGTAACATGTCAAGTGCATGTGTCCTATTCATCTTAG ATGAAATGAGAAGGAAATCAGCTCAAGATGGACTCAAAACCACTGGTGAAGGACTTGAATGGGGTGTGTTATTCGGTTTT GGACCTGGACTTACCATTGAAACCGTTGTTTTGCGTAGTGTGGCTATATAATATGCCTGATTGTTTTATTTATTATGTAA CTTCAACAAACTCACTAGATTCTGTATTGAATCTTTGAGAAAGAAAATAAACTCATATGGAGTTTGGTTATGTATGTTCA AATTAAATTAATGAATGGTTAGTAGCTTTATTCTATTTTTTTAATGCATCCTTTACAATGTAGTGTTTCATTTTGAATAG CTTCATCAGTTACACTGAAGTGTTTGATTACATAACTCAACAATTTTTAATCTGATAGCCGAAAATCAGTGGTCTTGGTT TGGTTGTAGACAGAATAAGCCACTGAGAATTGATCATTCCCATAGAAAATAGCTCCTTGCTATCATCGTAGCTGAGGTAG CAGCAGGGAAATTACAAGTATTTCTATAAGACATGGATATGGTGTTCATTTGGTATTTCCATCTACACTTGATTGGCACC ACTCTGCTTCAGTTTCGTATGCTGCTTTTATCATTGTATTCATTTTGAATTCTAAGCTGATAAAATATCGATTCATTTTG GATGCTTTTACCTATTTAAGTTAATTTCCTTCTTGGTTGTGGCAGAGGCTGCTGGTGCTTGGATCTTGTCCTAAAGAAGA GGAAGGTAAAAACTATGCTTTATTATCTTATTTTGTGAGTGTTTGCTTAATTGGAAGAATCTCACTTTGTCTGTGGAAGT ATTATTCAGGTTGAATTGTTTTAAGTATTACCTAAGTGTAGCACTGTAGCCTTTTCTTTTTGCTGGGCAATATACTTATG AGAGAGACCAGAGAAATGCTTTTTTCTCTACTTTGTTCCAACCAACCTCAAAAGGTAGCCCTTTACAGTTCACCTGTTAG ATTTGATACATATAGATTTCTCATTGAGTCATTTTTTACCCAAGCTATATTGGCTTCTGAGAAGGCAGAAGAAATCTTAC TCAGGCCTAAGACCTGACTGAGAGGCCCGAGTTGCTTTCTTCAGTTCAGATTCACCATGCCCAGGCTCAATAACATTGAT TTGATATGTTTAATTAATGATCCTCATCTTTCTGTTCATTTGCTGGTTTTATTATCCTTATGGTGCCTGATACTAGAAAT TTCATCAAATACTGAAGTGCTCATGGCTCCATGCTACAGTCATTTATAACGTACTTATTGAGGTTGTACATTTGTTTCGT GGTCCTTTCTCTTGGTTGAAATGTTCTGATCCTTGATTTTCTGCAAAAAATTGTAGTTGATCCTTTTATTATAATTAAAA TTGGCAGGAATGACTCTCTTTAATTTAATTATGCATGTATTACATTTTCGTTAGTGTGAGTGTTGGTCGTTTGTGTGGAA TATGCAACTTTTTAAAATACAATTATGCTATATAACGTGGTTTATTGTTTTTAGATTAACATGAATCTTGGATCAACTTT TTATGCAAAAGTGAAATGGTTTCATGAATTTATGTCAACTGCATGATTTCTTGCTTATTGTTAATACATACTGTCTAATG CCTATTCTTGCTTCTTACTTCTTCATGGGTCATTCATCCTTTTGCAAATTTATGTGTTACAATTGCTACTCAACATTTTT GTAACAGCATCATCGACTTGCATCAGTGGAAAGAGATTTGCAGCCATATGAGAATGAAGCTCAGCCTTCTAAAGATTGTA CCCTTTCTTTAGTTTATGTCCTGATGAATGTTTCAGTGTACCTTCTAATATTTGAGTATGAATATTTTCTTGTGGTTTAC AGACAATTAAAATTTGGAAAAAAAATGAATTTGGCTTTGTTTGTCTCTCTATCGTTGGTAATATACTAATATATCTATGT AATTATTTAATTTTTCTGCTTTTAATCAGTTTCAGTTATCTGATGGCATGACATTTCGGTTGTGTGGAATTTGTTTCAGT GTAAACTTTTCTGATATGAGAGTTTTATGTATTTTACAATATTGACTGGGATGTGTATTGGAAAAAAACTCTTCTATTCA GCATCAAGCCCCATAATGCAAGTTTGGAAAAAAAACTCTTCTATGAATCTGTTTCAGATTTGTATTAACTGAAAAGCTTG CTGAGTTCAAGATGAGTTTTGTTTATATAGAACTGCAGAGTTTAGCTTCTTAGAGAAGCTAACTATTACAAACTAATCAA TCTGAAAGATACCAGTGTAGAAAACCAAGTAGTCTAACAGAACAGCTGAACCATAACAGTGTAGAACTAAAGATAACACT CTAATATGCCCCCTCAAACTCAAGGTTAGAAAGCAAACTTGTCAACCACATTGAGTTTGTGCGTGAAAGCTGAAAAATGA ATAGGAGACAGTGCTTTGGCGAGAATATCAGCCTTTTGATCAAGAGATGTGCCATGCTCAACAATTAAACTCTTGTTTAG AATCTTTTCCTGAACAAAAAAAGTATCCAACTCCATATGTTTAGTTCTGGAGTGTAGAACTGGATTATGAGTTAGGGCAA TTGCACTCATATTATCACAGTATACCCTTAGAGTCTGAAAATGAATTTTCAATTCTGTGAGCAATGACTGAGCCCAGAGT AATTCAGCTACAGTATTTGCGAGACTCCTATATTCTGCCTCTGTACTGGATCGGGCAACCAATGATTCCATGGTGTACTA ATTTCTTTTGCTTCAGACATAACAACCCTCTCAAGCAAGTCATGGATATACTTGGATTATCCTAATAGTAGAGATCCATC TTTCAAATGCTAAACTTGAACCTCCAAAAGATAATCCAATTGGCCAAGCTGTTTCAATGCAAACTCAGAATTCAACCTGT CAACAATCAGCTGCATCACTTTAAGAGAGTCACCAGTAACTCTTATGTCATCCACATAGACTAAAATATTTGATACAAGT AGAGGTATGCAATATAAAGAGAGTCAAACTGACTGTTCCTTTAGTTTCTCCAGTTTCCCTGGTTATTTTGGTCTCCTTCT GTAGTCCTTATTTTTCAAAATAAATATTAAAATTCAGTGTGCTTGCTGGATTTGGTCTCCTGTAGTTCTTATTTATTCAG GAGACATTAGGGTAAGGATTTGGCTTGGAAAGTGGATAGTACAATGCTGGGTTTTAATATCCAGAATAATCTTATTTTCT ACTTCCAAAAGCCTAGTAAGATCATTAGAGCTATCTTTCATCAGTATATTTTGAGTTTGAAAGACAATGTATGAATAGAA CAACAAAGAAATTAAGAATTGTCACTCAGTGGTGGACTGCAAGATTTATGTGGAATTTATTGTACAGATTGTGGGTCTGA AACTGCCAGTAAATACATCTTGTGGTGACCTATATAGTGGCGGCTTTGTGTCACCGGTAAATGAAACACAATTTCTGGCG CCCTGTACCAGCGGTTAGTGGAAAATCACCATAAATCAAGTTTTGGCACCTATGGTTCTGGGCTTCTGGCAATCTAAAAG AAACAGCTGGTAATTGACTGTGTCACAAACAAAAATAAAGCTATCACTAGGTTATATAGTTTTTCTCATATTTTCATACA TAAAAAATTATAGGAAAATAATGTTGGAGAGTTTTCCAAACACACTTAGGTTTTGTTATCGATGATGCTAACTGAAATTC AAACACATACTTAAGTAATGGTAAAGTAAATGTATTCAATAACATATTGCGATGCCAGTACCATATAGAGAGTTTGTTTG ACCATATGAGATTATGTGAAGTATATTGTGATGGCCAGTAACTGTAAAGTAAATGTATTCAATAGCATATTCCTCATAAT AACACTTACGGTTATGGGAATATGACTACCAGAGTATTTTTTCCAGGTAAAGTATAAATGTGTTTGGTAGGCATTTAACA GTTTTACAATTTTATTTAATAAAAAATAAAAATAGTAGTCAGCACCAAACCTATGGTTTTAGACTTTTAGGAATCATTAT TGAGGTATTTTCCACCAAACTTCGGAAGGTTATGACTGCGCAGCCAAGCCAAGCCAGCCATTGACCAAACATAGTCACTG ATTGTTGAATAAAGAAAGAATGAAAATAGTAGTCAGCACGTGATGCTCAGCTACCACACTCAACTCAAAAATCAACCTTC GCACGGACCACACATATAAATTCCCTTCTCCTCACACAAGTTTCCACACCACAACTCTCTTACACAACCAACAACAACTA CTGCAACTTAGCTCAAATTGCACTGCTTTATTTGCTATCCATATTTCTTTGCTTACAAACCTATTTTCAGAAACAAAGAA TTTGAAGATGGTGAGTGTTGCTGAGATTCGTAAGGCTCAAAGAGCCGAAGGCCCTGCAACCATCTTCGCTATTGGCACTG CTAATCCTCCTAACTGTGTTGATCAAAGCACCTATCCTGATTTCTACTTCAGAGTCACTAACAGTGAGCACAAAACGGAG CTCAAGGAGAAATTTCAGCGCATGTGTAAGCATTCTACATTTTTCTCTCTAGCTCCATTTTTTTTTTCTATATAACATTC ATTTACATTGCTAGACAGACTAGTCATTATCAGATTGATTTTGTTGTACTAATGTTGTTTCTTTGTAATTCATTTCAGGT GACAAGTCAATGATCAAGAAGAGATATATGCACTTGACTGAAGATCTTTTGAAAGAGAACCCCAACATGTGCGCTTATAT GGCACCTTCTCTGGATGCTAGGCAAGACATGGTGGTCGTAGAGGTACCTAGACTAGGCAAAGAAGCTGCTGTCAAGGCTA TCAAAGAATGGGGTCAGCCTAAGTCCAAGATTACCCACTTAATCTTTTGCACCACAAGTGGTGTAGACATGCCCGGTGCC GATTACCAGCTAACCAAACTCTTAGGTCTTCGTCCATATGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGG TGGCACGGTGCTTCGTTTGGCTAAGGACTTGGCTGAGAACAACAAAGGTGCTCGTGTGCTAGTTGTTTGTTCTGAACTAA CTGCAGTTACCTTCCGTGGCCCTAGTGACACTCACCTAGACAGCCTTGTTGGACAAGCATTGTTTGGAGACGGGGCAGCT GCACTCATTGTTGGTTCTGATCCGGTGCCTGAAATTGAGAAACCTTTGTTTGAACTGGTTTGGACTGCACAGACTATTGC TCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGTTGGATTGACATTTCATCTCCTTAAAGATGTTCCTGGGA TTGTTTCAAAGAACATTGAGAAAGCACTAATTGAGGCCTTCCAACCACTAGGCATATCTGATTACAATTCAATTTTTTGG ATTGCACACCCAGGTGGCCCAGCAATTCTAGACCAAGTTGAACAGAAGTTGAGCTTGAAACCTGAAAAGATGAGAGCTAC TAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGCGCCTGTGTCCTATTCATCTTAGATGAAATGAGAAGGAAATCAG CTCAAGATGGACTCAAAACCACTGGGGAAGGACTTGAATGGGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTGAA ACTGTTGTTTTGCGTAGTGTGACTATATAATATGTTTGATGATTTTATTATTTTGTAACACTCAAACTCATCAGATTTTG TATCTGTGAGGAAGAAAATAAACTCATATTGAGTTTGGTTATGTATGTTCAAATCAAAATAATGAATGGCTAATTGCTTT TTTTCATTTGTTTCAAAACTGAATATATGTTTATGTATCATTGTTTGGAAAACATGTGACCCTTATTTTATTGTCAAGTG CATGTTTGACATGTTGATTATTTTTTACATCCTTCAAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0451900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAGTGTAGCTGAGATTCGTAAGGCCCAGAGGGCTGAAGGCCCAGCAACCATCCTGGCTATTGGCACTGCAAATCC ACCAAACTGTGTTGACCAAAGCACTTATCCTGATTTCTACTTCAAAATCACCAACAGTGAACACATGACAGAGCTTAAGG AGAAGTTTCAGCGCATGTGTGACAAGTCTATGATCAAGAAGAGATATATGTACTTGAATGAAGAAATTTTGAAAGAGAAC CCCAACCTTTGTGCTTATATGGCACCATCTTTGGATGCTAGGCAGGACATGGTGGTGGTAGAGGTACCAAGGTTAGGGAA AGAAGCTGCAACAAAGGCTATAAAAGAATGGGGCCAGCCAAAATCTAAGATTACTCACTTAATCTTTTGCACCACAAGTG GTGTAGACATGCCTGGTGCTGATTATCAACTCACCAAACTCTTGGGTCTTCGCCCATCTGTGAAAAGGTACATGATGTAC CAACAAGGGTGCTTTGCAGGTGGCACGGTGCTTCGTTTGGCTAAGGACTTGGCTGAGAACAACAAAGGTGCTCGTGTGCT AGTTGTTTGTTCTGAACTAACTGCAGTTACCTTCCGTGGCCCTAGTGACACTCACCTAGACAGCCTTGTTGGACAAGCAT TGTTTGGAGACGGGGCAGCTGCACTCATTGTTGGTTCTGATCCGGTGCCTGAAATTGAGAAACCTTTGTTTGAACTGGTT TGGACTGCACAGACTATTGCTCCAGATAGTGAAGGAGCCATTGATGGTCACCTTCGTGAAGTTGGATTGACATTTCATCT CCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTAATTGAGGCCTTCCAACCACTAGGCATATCTG ATTACAATTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTCTAGACCAAGTTGAACAGAAGTTGAGCTTGAAA CCTGAAAAGATGAGAGCTACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGCGCCTGTGTCCTATTCATCTTAGA TGAAATGAGAAGGAAATCAGCTCAAGATGGACTCAAAACCACTGGGGAAGGACTTGAATGGGGTGTGTTATTCGGTTTTG GACCTGGACTTACCATTGAAACTGTTGTTTTGCGTAGTGTGACTATATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0451900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSVAEIRKAQRAEGPATILAIGTANPPNCVDQSTYPDFYFKITNSEHMTELKEKFQRMCDKSMIKKRYMYLNEEILKEN PNLCAYMAPSLDARQDMVVVEVPRLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMY QQGCFAGGTVLRLAKDLAENNKGARVLVVCSELTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPLFELV WTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIEKALIEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLSLK PEKMRATREVLSEYGNMSSACVLFILDEMRRKSAQDGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVTI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.47.10
1 235 235 8.2E-94
IPR016039
SUPERFAMILY
SSF53901
1 233 233 2.25E-81
IPR016039
PANTHER
PTHR11877:SF62
2 388 387 1.6E-258 –
PANTHER
PTHR11877
2 388 387 1.6E-258
IPR011141
PIRSF
PIRSF000451
2 389 388 5.8E-139
IPR011141
Pfam
PF00195
6 228 223 4.3E-122
IPR001099
CDD
cd00831
16 384 369 7.32109E-175 –
ProSitePatterns
PS00441
156 172 17 -
IPR018088
SUPERFAMILY
SSF53901
235 386 152 1.04E-51
IPR016039
Gene3D
G3DSA:3.40.47.10
236 389 154 1.2E-56
IPR016039
Pfam
PF02797
238 388 151 1.1E-70
IPR012328

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016746
Molecular function Transferase activity, transferring acyl groups Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
Subterm of
GO:0016747
Molecular function Transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0451900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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