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LotjaGi2g1v0452700.1

Overview

Field Value
Gene ID LotjaGi2g1v0452700
Transcript ID LotjaGi2g1v0452700.1
Lotus japonicus genome version Gifu v1.2
Description p-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT1G05460.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3; TrEMBL-Plants: tr|A0A0B2RHL6|A0A0B2RHL6_GLYSO Putative RNA helicase SDE3; Found in the gene: LotjaGi2g1v0452700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94553860..94559285) extracted from Lotus japonicus Gifu genome v1.2.

ACTCACCCCAAACCTTTCCCTTTTCTACCAAAATGCATTTCGCTCGATGACGTTCCAATCAATGCGTCACGCCATGGTTC AAATGCAGAGTCTCCATTCGCAATCGCATACTCGCATCGTTTGAGTCATAAGGTTCGATCATTTTGCTTGCATTTTTTTT TTGTTTTCATTTCACTCGTTCAGAGTATTACGTGCATGATTATTGCAATCTGTGCTCACTAGTTTTGATTTCTTCTTAAT CGAACGCGCATTTCCGTTCCTGCAATCTCGACGGTTATCTCTCAACCAATTCTTCCATTTTCTCTGTTTATGCTTCTAGT TTTCACCTATAAATTCTCTCTTTCTGTTTAGGGTTTGTTTATTTCACCTAAAATGCATTTAGGAATCGCATGATTTTAAT TCACAGATAAGGGGAATAACCCTAGTTGTTTTTTTCTTTGCTGATAATCTTATACTATGGGTGCTAATTAATCTTTTGGG TGATACATTTTGTAGAACTAAAGCTTGGAAGTAGTGTGCACCAGTTTCCGATGAGTACCGCCGGATACAAATCAGACGGG GAGTGCTCTGTCATAAGCTCCAAGGCTGAAATTCCGTTTCTCGATTTTGAGGAAGAGAAATCTGTTTGCAGTTACTTGGC CACTGAAGAGGATCCCGTAATCGTATCCATTCCGTTTGCATTTGTGCAGGGGAAGCCGAAATCAGTAACTGTTGGAGAAA CTGCTGTGGATTTGGTAACCATTAATAACACTACTGATGAACCTGTGCAGCTGTGGAGTGTTCATATTTTTGCCTCAAAT CCTACGGACTCTTTCACTCTTTCTCTCATGGAACCTCCGTCAGTGAAGTCGAATGCAGATAGCGATGAGAGCTTTTTAGA ATTTTGCACTCTGGAGGACAGGATGCTCCAGCCTCGCGAGGTCCTAAAGATATGGTTGTCTTGCAAGACAAAAGAAATAG GCATGTACTCATCAGTTGTGTATTTTGATATTGGAGATGAAAAAATAGAAAGGGTGGTTTTCCTCTTAGTTGAAGACAAG ATCTCCAAGTCTTTGACTTCTAACAGGCCCTATGCAAAAGGAAGGAGAAAAGACAAATTGGTCGTAGATACTTTTGTTCC TGGCTCACGTCCTGCAGCAAAGCCACATCGAAGATACATAAATAGGCTTCCAAATTATAACATTCCCAGGGACATTAGAG AATTGCTTGAGAACAAACAGGTCCCTGAAATTGTTTTCAATGGTCTTACAAGAAACAATTATGCCTCTTATTTCAAAACA TTAATAATGATGGAAGAGATACAATTAGAGGTAATCTTATGTCTTTATTTTTAGCAAAAGAAAAGTAGATTAAAAGTCAT CAAAGAATACAAGCCACATTTTTGTTTCTACTAACTGCGTGCCATTGACTTCTGCTTTCAGGAATACATGAGCACTTATG GCATGGAAGGCATAACTTTGAGAAAGAGAGGCAACCATTTTTTGTCCTTGGAGGTTCCTGGGCTTGCTGAGAGAAGACCA TCACTTGTTCACGGGGATTTTATCTATGCCACGCCGGCGTCTGAACACAATGCAAACAAAGCTCGCATCTATCAGGTTTG ATCCTCATTTGGCTGCATATCACATTGTCACTTGGAACCACTCACTTGGATAAATAAAATCTTTAACTTGAATTTGTTGC ACCAAAATTTGGTCTTTAAAACTAGTAGTTATATGCGGACTGTAATTATTTACTCATTTCTGTATTTTCTGAAATGATAA TATAAATGGAGTCTGGTCTGGTAGATTATAGGAGTACATGTTTTTGTGGTAAATTTATCTTGACCATGGGCCGTAGAATG CCATGCATGCCTTGGTTGTATTCCTTCATGGGCATGGGCGTGGCTCATGACTTTCACCTTTGCACTGACAGACATGATCC AAATCCAGATCCAGCTATGATGGATCAGACATCGCTTTATACACTATCTATTTTAGTGATTTTAAGTTATAGAATTGTAA AATAAAAGAAGTGGTTATTTCATGTAATAAATTTGGCATGTCTGTGTCTTTTCTTCTATTTGACAACTTTATAGGAATCT TTTTTGTGAACTAATAATTACCAACAACTATCTACTTGATATTTTGCACCAAGCCAACCATAGTAAGATTATTTTTGTTT TTTGACTTTGCCTATACACTAACATTCTTTCGTCTTCTAATCATCTTTAATTCATACAGATATAATTGGCAGTGTCTTGT CATGAAGCAATTTTGCCCTTATTCTGAACATTTCTAGAATCATTTTTAGGGGGGTTAAAATGGGACTTGCCATTCTTTGT TTAGAACCCTTGTTCGGCTCTCGCCTAGAAAACAAACACCATCTTACCTTCAGTTTTGACACAAATCCTCTGACCCGCTG CTCGCCAATGTCACCTGATAAGCGGTGGGGTTTTCCAGTCAGTCCCTGACTCCCTGCTAATTCTGCACCTATCTTCTTTG TTCTATTTCATGTCCTCTGTTCTGCACTGATCCACTGCTCTGTTCTTTTTCTTCTTCAGGTTGCCTTTTATCTACTATGT ATCTTCTGTTTGTTGCCCTCTTAGTCTTTTATGTTCTGACTTCTTATTGGTCTCAGCCTTGTGTGTTCAGCTCAAAACCT ATGACTCTTGATCATTAAGCATGATTATGCTCATAAAAATATCATTAATTTTGAGTATTTTTTACTTTTGAGAATTTAGG TATGTATCAAAATTTTCAGTGAGCAGTCATCCTGCTATAACAGTTTTGGTTTTTGGCAACTAATGCCACTATCCTGTATT GACAAATCTGGATTTTGGGTATCTTTTGTTGTTTATAGATACGTGCTTATCAAATTTCCTTTGAATTAGTATAAATGTAT TTGTTTAGTTACAGTCATGATCCTCCCTTCATTTAAATTTCTGCAGGGATATATCCACCGGGTTGAAGCTGATGAGGTCT ATTTGAAGTTTGATCCTGAATTTCACTTTATGCATAGAAATGAGAATCTTTATGATGTTCACTTCACGTATAATAGGCTC AATATGAGAAGAGAATATCAAGCAGTTGAGGCAGCAGAAACCTTAGGTCCTGACTTCATTTTCCCCTCCAAATCATCCAG AAGGAGGCACATTAAAACCACAGATCTGGTTCCCATATCTGGTACTTTTAATGAGGAGCAAGTTTGTTCAATCAAAATGA TTCTGGGTTGCAAAGGTGCACCACCATATGTGATTCATGGACCTCCAGGTACGGGAAAGACTAGGACAATAGTAGAAGCA ATCCTTCAGCTCTACACACATCAAAAGGATGCTCGTATTCTTGTGTGTGCTGCCTCAAATAGTGCAGCAGACTATGTACT GGAAAAACTACTTGCTCAACAGGATGTTGAATTTCGTGAAAATGAAATATTCAGGCTCAATGCAGCCACCAGACCATATG ATGATGTAAAACCTGAACATATTCGCTTCTGCTTCTTTGATGAGTTGGTATTTAAGTGTCCCCCATACAATGCTCTGATT CATTATAGGATCATAGTATCCACATATATGAGTGCTGCTCTTCTTTATGCTGAAGATGTTTGTCGCGGTCACTTTTCTCA CATTTTCTTGGATGAGGCTGCCCAAGCTTCAGAACCTGAAGCCATGATCCCTGTTGCTCATCTCTGCAAAAGGGACACTG TTGTTGTTCTGGCTGGTGACCAATTGCAGTTGGGTCCTGTGATATATTCAAAAACTGCAGATGAGTATGGACTGGGAGTT TCATACATGGAACGGTTGTTTGACTGCGAGTTATACGCTAGTGGAGATGCCAATTATGTAACCAAACTGGTTAGAAACTA TCGATGTCATCCAGAGATTTTATATCTCCCTTCAAAGCTGTTTTATAATGGGGAATTGATGGCATGTAGAGATTCTGCAA CATTCATGGAAATGGAAGAGCTCCTCCCTAATAAGGAGTTTCCTGTTCTTTTTGTTGGCATCCAAGGATGTGATGAAAGA GAAGGTAATAATCCGTCATGGTTCAACCGAATTGAAGCAAGTAAGGTTGTACAAATTGTCAACAAGCTGATAGCTGGTGG GAAAATAAGAGAGGAAGACATTGGCATAATAACGCCATACAAGCAACAAGTGCTGAAAATAAAACAGACACTTGAAAATG AAGGGATGCCGGATATCAAAGTTGGTAGTGTTGAGCAATTTCAGGGACAAGAAAAGGAGGTGATAATCATATCAACTGTT CGATCAACCATCAAGCACAATGAGATTGACAGAGTCCACTGTCTTGGCTTCTTGAGCAATTTTAGAAGGTTTAATGTGGC TGTAACCCGTGCTATCTCATTACTGGTTATAATTGGGAATCCCCATATTATATGCAAGGTACTGCCTTTTATATAACCAG CCATGACTTAATTTTTAGTAAGTTATCTCTCTGGTCAACTTTATGTTGTAAATGGAACATTTTCATATCTCCTCTGATCG ATTGCATTGTATGTATGTCAAAGTTAGGCAGTTATCATGTCATTAGTATTTCTAACATGGTTGTAATGGGTAATGAGAAT GCTTACAGATATAGTATTTCCACTTTCTGCTTAACTAGTCTGTTTGTCTTTGTAGCCAGATAATTAAAAACAGGTTCAAT GTCTGATTGTTCTTTGGTCCCTTGGTTCTGATCTTTTTGGTTGTTAATGAAATCGTTACTCACTTGTCATTTTTTGACAG GATGAAAATTGGGGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTATCAGGGTTGTGCTCTTCCTGAAAGGCCGGC GGCACCTTGTGATAATGAGTACAATGGGGAGAACTCTTGCTTAACCTATAATGATGATAATGCATTACCCTCTAACAATG GAGGATGGGATCAACCCTCTAACAATGGAGAATGGGATCAACCCTCTAACAATGGAGAATGGGATCAACCCTCTAACAAT GGACAATGGGATCAAGAAGATCCACCCTACTCTGAGTTCCATAAACCTGTTACTGATGAAGCTGAATGGTCTGATGGCTG GACATTAAATTAGTTCAGTGCCTTGAACTTTTTTTACTCGTATTTTTTGGTGATTAGTCTCTGTTGACTTGAACTTATTA TGTTAATTTAGAATGCAGGGGAAAAGGATATACTCTTGATCATTTCATTTCTTTCATCATGCCTTTATGTTAATACTGCA CGACATTGACATCGGGTTACAAATACTGCATATTTGCATGTAAGGTTAAAAAGTGCATATTATCTCTTTTTTTCCATCTT TTCATTTTTTTCCCGGTGATTTTCAATGTTTTATCCACGATTACTCGGTTTTTTTTACAACCTAACTCTTTTTGAGTTGT TTGTCTATGTCACCATTATACGATTGAACTGTGAGTTTTAGAAGTAATAATTTTGGAATCATTGGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0452700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTACCGCCGGATACAAATCAGACGGGGAGTGCTCTGTCATAAGCTCCAAGGCTGAAATTCCGTTTCTCGATTTTGA GGAAGAGAAATCTGTTTGCAGTTACTTGGCCACTGAAGAGGATCCCGTAATCGTATCCATTCCGTTTGCATTTGTGCAGG GGAAGCCGAAATCAGTAACTGTTGGAGAAACTGCTGTGGATTTGGTAACCATTAATAACACTACTGATGAACCTGTGCAG CTGTGGAGTGTTCATATTTTTGCCTCAAATCCTACGGACTCTTTCACTCTTTCTCTCATGGAACCTCCGTCAGTGAAGTC GAATGCAGATAGCGATGAGAGCTTTTTAGAATTTTGCACTCTGGAGGACAGGATGCTCCAGCCTCGCGAGGTCCTAAAGA TATGGTTGTCTTGCAAGACAAAAGAAATAGGCATGTACTCATCAGTTGTGTATTTTGATATTGGAGATGAAAAAATAGAA AGGGTGGTTTTCCTCTTAGTTGAAGACAAGATCTCCAAGTCTTTGACTTCTAACAGGCCCTATGCAAAAGGAAGGAGAAA AGACAAATTGGTCGTAGATACTTTTGTTCCTGGCTCACGTCCTGCAGCAAAGCCACATCGAAGATACATAAATAGGCTTC CAAATTATAACATTCCCAGGGACATTAGAGAATTGCTTGAGAACAAACAGGTCCCTGAAATTGTTTTCAATGGTCTTACA AGAAACAATTATGCCTCTTATTTCAAAACATTAATAATGATGGAAGAGATACAATTAGAGGAATACATGAGCACTTATGG CATGGAAGGCATAACTTTGAGAAAGAGAGGCAACCATTTTTTGTCCTTGGAGGTTCCTGGGCTTGCTGAGAGAAGACCAT CACTTGTTCACGGGGATTTTATCTATGCCACGCCGGCGTCTGAACACAATGCAAACAAAGCTCGCATCTATCAGGGATAT ATCCACCGGGTTGAAGCTGATGAGGTCTATTTGAAGTTTGATCCTGAATTTCACTTTATGCATAGAAATGAGAATCTTTA TGATGTTCACTTCACGTATAATAGGCTCAATATGAGAAGAGAATATCAAGCAGTTGAGGCAGCAGAAACCTTAGGTCCTG ACTTCATTTTCCCCTCCAAATCATCCAGAAGGAGGCACATTAAAACCACAGATCTGGTTCCCATATCTGGTACTTTTAAT GAGGAGCAAGTTTGTTCAATCAAAATGATTCTGGGTTGCAAAGGTGCACCACCATATGTGATTCATGGACCTCCAGGTAC GGGAAAGACTAGGACAATAGTAGAAGCAATCCTTCAGCTCTACACACATCAAAAGGATGCTCGTATTCTTGTGTGTGCTG CCTCAAATAGTGCAGCAGACTATGTACTGGAAAAACTACTTGCTCAACAGGATGTTGAATTTCGTGAAAATGAAATATTC AGGCTCAATGCAGCCACCAGACCATATGATGATGTAAAACCTGAACATATTCGCTTCTGCTTCTTTGATGAGTTGGTATT TAAGTGTCCCCCATACAATGCTCTGATTCATTATAGGATCATAGTATCCACATATATGAGTGCTGCTCTTCTTTATGCTG AAGATGTTTGTCGCGGTCACTTTTCTCACATTTTCTTGGATGAGGCTGCCCAAGCTTCAGAACCTGAAGCCATGATCCCT GTTGCTCATCTCTGCAAAAGGGACACTGTTGTTGTTCTGGCTGGTGACCAATTGCAGTTGGGTCCTGTGATATATTCAAA AACTGCAGATGAGTATGGACTGGGAGTTTCATACATGGAACGGTTGTTTGACTGCGAGTTATACGCTAGTGGAGATGCCA ATTATGTAACCAAACTGGTTAGAAACTATCGATGTCATCCAGAGATTTTATATCTCCCTTCAAAGCTGTTTTATAATGGG GAATTGATGGCATGTAGAGATTCTGCAACATTCATGGAAATGGAAGAGCTCCTCCCTAATAAGGAGTTTCCTGTTCTTTT TGTTGGCATCCAAGGATGTGATGAAAGAGAAGGTAATAATCCGTCATGGTTCAACCGAATTGAAGCAAGTAAGGTTGTAC AAATTGTCAACAAGCTGATAGCTGGTGGGAAAATAAGAGAGGAAGACATTGGCATAATAACGCCATACAAGCAACAAGTG CTGAAAATAAAACAGACACTTGAAAATGAAGGGATGCCGGATATCAAAGTTGGTAGTGTTGAGCAATTTCAGGGACAAGA AAAGGAGGTGATAATCATATCAACTGTTCGATCAACCATCAAGCACAATGAGATTGACAGAGTCCACTGTCTTGGCTTCT TGAGCAATTTTAGAAGGTTTAATGTGGCTGTAACCCGTGCTATCTCATTACTGGTTATAATTGGGAATCCCCATATTATA TGCAAGGATGAAAATTGGGGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTATCAGGGTTGTGCTCTTCCTGAAAG GCCGGCGGCACCTTGTGATAATGAGTACAATGGGGAGAACTCTTGCTTAACCTATAATGATGATAATGCATTACCCTCTA ACAATGGAGGATGGGATCAACCCTCTAACAATGGAGAATGGGATCAACCCTCTAACAATGGAGAATGGGATCAACCCTCT AACAATGGACAATGGGATCAAGAAGATCCACCCTACTCTGAGTTCCATAAACCTGTTACTGATGAAGCTGAATGGTCTGA TGGCTGGACATTAAATTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0452700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTAGYKSDGECSVISSKAEIPFLDFEEEKSVCSYLATEEDPVIVSIPFAFVQGKPKSVTVGETAVDLVTINNTTDEPVQ LWSVHIFASNPTDSFTLSLMEPPSVKSNADSDESFLEFCTLEDRMLQPREVLKIWLSCKTKEIGMYSSVVYFDIGDEKIE RVVFLLVEDKISKSLTSNRPYAKGRRKDKLVVDTFVPGSRPAAKPHRRYINRLPNYNIPRDIRELLENKQVPEIVFNGLT RNNYASYFKTLIMMEEIQLEEYMSTYGMEGITLRKRGNHFLSLEVPGLAERRPSLVHGDFIYATPASEHNANKARIYQGY IHRVEADEVYLKFDPEFHFMHRNENLYDVHFTYNRLNMRREYQAVEAAETLGPDFIFPSKSSRRRHIKTTDLVPISGTFN EEQVCSIKMILGCKGAPPYVIHGPPGTGKTRTIVEAILQLYTHQKDARILVCAASNSAADYVLEKLLAQQDVEFRENEIF RLNAATRPYDDVKPEHIRFCFFDELVFKCPPYNALIHYRIIVSTYMSAALLYAEDVCRGHFSHIFLDEAAQASEPEAMIP VAHLCKRDTVVVLAGDQLQLGPVIYSKTADEYGLGVSYMERLFDCELYASGDANYVTKLVRNYRCHPEILYLPSKLFYNG ELMACRDSATFMEMEELLPNKEFPVLFVGIQGCDEREGNNPSWFNRIEASKVVQIVNKLIAGGKIREEDIGIITPYKQQV LKIKQTLENEGMPDIKVGSVEQFQGQEKEVIIISTVRSTIKHNEIDRVHCLGFLSNFRRFNVAVTRAISLLVIIGNPHII CKDENWGQMLWHCVDNSSYQGCALPERPAAPCDNEYNGENSCLTYNDDNALPSNNGGWDQPSNNGEWDQPSNNGEWDQPS NNGQWDQEDPPYSEFHKPVTDEAEWSDGWTLN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10887
8 836 829 0.0 –
PANTHER
PTHR10887:SF444
8 836 829 0.0 –
Gene3D
G3DSA:3.40.50.300
327 609 283 1.4E-49 –
SUPERFAMILY
SSF52540
398 806 409 9.85E-61
IPR027417
Pfam
PF13086
399 494 96 6.3E-16
IPR041677
CDD
cd18038
400 624 225 1.60019E-102 –
Pfam
PF13086
518 587 70 1.0E-10
IPR041677
Pfam
PF13087
595 797 203 2.7E-51
IPR041679
Gene3D
G3DSA:3.40.50.300
623 823 201 3.8E-57 –
CDD
cd18808
625 813 189 3.59599E-69
IPR041679
MobiDBLite
mobidb-lite
852 912 61 - –
MobiDBLite
mobidb-lite
852 888 37 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0452700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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