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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR041677
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.640s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0101200.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|G7KFQ2|G7KFQ2_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101200 LjG1.1_chr1 15352980 15357581 +
2 domain predictions
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LotjaGi1g1v0101400_LC.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|G7KFP0|G7KFP0_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101400_LC LjG1.1_chr1 15435712 15436293 +
2 domain predictions
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LotjaGi1g1v0101500.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr|G7KFN9|G7KFN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101500 LjG1.1_chr1 15456421 15466350 +
2 domain predictions
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LotjaGi1g1v0101500.2
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr|G7KFN9|G7KFN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101500 LjG1.1_chr1 15460415 15466370 +
2 domain predictions
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LotjaGi1g1v0101500.3
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr|G7KFN9|G7KFN9_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi1g1v0101500 LjG1.1_chr1 15461008 15472249 +
2 domain predictions
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LotjaGi1g1v0604000.1
n.a. DNA replication helicase dna2, putative; TAIR: AT1G08840.4 DNA replication helicase; Swiss-Prot: sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr|A0A072TZB7|A0A072TZB7_MEDTR DNA replication ATP-dependent helicase Dna2; Found in the gene: LotjaGi1g1v0604000 LjG1.1_chr1 114863097 114887289 -
2 domain predictions
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LotjaGi1g1v0604000.2
n.a. DNA replication helicase dna2, putative; TAIR: AT1G08840.2 DNA replication helicase; Swiss-Prot: sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr|K7KYE7|K7KYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0604000 LjG1.1_chr1 114863171 114873714 -
2 domain predictions
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LotjaGi1g1v0604000.3
n.a. DNA replication helicase dna2, putative; TAIR: AT1G08840.3 DNA replication helicase; Swiss-Prot: sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2; TrEMBL-Plants: tr|K7KYE7|K7KYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0604000 LjG1.1_chr1 114863361 114873401 -
2 domain predictions
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LotjaGi1g1v0721200.1
n.a. DNA-binding protein SMUBP-2; TAIR: AT2G03270.1 DNA-binding protein; Swiss-Prot: sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2; TrEMBL-Plants: tr|A0A0B2PI38|A0A0B2PI38_GLYSO DNA-binding protein SMUBP-2; Found in the gene: LotjaGi1g1v0721200 LjG1.1_chr1 129210206 129224659 -
2 domain predictions
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LotjaGi1g1v0721200.2
n.a. DNA-binding protein SMUBP-2; TAIR: AT2G03270.1 DNA-binding protein; Swiss-Prot: sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2; TrEMBL-Plants: tr|A0A0B2PI38|A0A0B2PI38_GLYSO DNA-binding protein SMUBP-2; Found in the gene: LotjaGi1g1v0721200 LjG1.1_chr1 129211818 129224477 -
2 domain predictions
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LotjaGi2g1v0024500.1
n.a. Embryo defective 2765; TAIR: AT2G38770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O60306|AQR_HUMAN Intron-binding protein aquarius; TrEMBL-Plants: tr|I1NCV6|I1NCV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024500 LjG1.1_chr2 8493422 8508591 -
2 domain predictions
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LotjaGi2g1v0024500.2
n.a. Embryo defective 2765; TAIR: AT2G38770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O60306|AQR_HUMAN Intron-binding protein aquarius; TrEMBL-Plants: tr|I1NCV6|I1NCV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024500 LjG1.1_chr2 8498449 8508219 -
2 domain predictions
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LotjaGi2g1v0417100.1
n.a. Regulator of nonsense transcripts 1-like protein; TAIR: AT5G47010.1 RNA helicase; Swiss-Prot: sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr|I1J9N5|I1J9N5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0417100 LjG1.1_chr2 91490178 91501926 +
2 domain predictions
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LotjaGi2g1v0452700.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT1G05460.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3; TrEMBL-Plants: tr|A0A0B2RHL6|A0A0B2RHL6_GLYSO Putative RNA helicase SDE3; Found in the gene: LotjaGi2g1v0452700 LjG1.1_chr2 94553860 94559285 -
2 domain predictions
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LotjaGi3g1v0000400.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q00416|SEN1_YEAST Helicase SEN1; TrEMBL-Plants: tr|A0A0R0FU35|A0A0R0FU35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0000400 LjG1.1_chr3 66160 88104 -
2 domain predictions
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LotjaGi3g1v0000400.2
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G16800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q00416|SEN1_YEAST Helicase SEN1; TrEMBL-Plants: tr|A0A0R0FU35|A0A0R0FU35_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0000400 LjG1.1_chr3 72007 88123 -
2 domain predictions
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LotjaGi3g1v0309700_LC.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|G7KFP7|G7KFP7_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi3g1v0309700_LC LjG1.1_chr3 65664820 65668283 -
2 domain predictions
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LotjaGi3g1v0415800.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G30100.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr|V7AP63|V7AP63_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415800 LjG1.1_chr3 82160883 82168851 +
2 domain predictions
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LotjaGi3g1v0415800.2
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G30100.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c; TrEMBL-Plants: tr|V7AP63|V7AP63_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0415800 LjG1.1_chr3 82162127 82167982 +
2 domain predictions
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LotjaGi4g1v0018100.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65810.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O15050|TRNK1_HUMAN TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi4g1v0018100 LjG1.1_chr4 2285970 2300700 -
2 domain predictions
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LotjaGi4g1v0018300_LC.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi4g1v0018300_LC LjG1.1_chr4 2340518 2340897 -
2 domain predictions
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LotjaGi4g1v0029400.1
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G15570.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|V7B556|V7B556_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0029400 LjG1.1_chr4 3618534 3639464 +
2 domain predictions
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LotjaGi4g1v0029400.2
n.a. P-loop containing nucleoside triphosphate hydrolases superfamily protein; TAIR: AT4G15570.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|V7B556|V7B556_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0029400 LjG1.1_chr4 3618716 3638927 +
2 domain predictions
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LotjaGi5g1v0020800.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0020800 LjG1.1_chr5 3834178 3848253 +
2 domain predictions
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LotjaGi5g1v0209800.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0209800 LjG1.1_chr5 51294760 51308892 +
2 domain predictions
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LotjaGi5g1v0209800.2
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8BV79|TRNK1_MOUSE TPR and ankyrin repeat-containing protein 1; TrEMBL-Plants: tr|A0A0B2R102|A0A0B2R102_GLYSO TPR and ankyrin repeat-containing protein 1; Found in the gene: LotjaGi5g1v0209800 LjG1.1_chr5 51295375 51308816 +
2 domain predictions
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LotjaGi6g1v0000200.1
n.a. DNA-binding protein SMUBP-2; TAIR: AT5G35970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2; TrEMBL-Plants: tr|A0A151RV11|A0A151RV11_CAJCA DNA-binding protein SMUBP-2; Found in the gene: LotjaGi6g1v0000200 LjG1.1_chr6 23313 31129 -
2 domain predictions
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LotjaGi6g1v0000200.2
n.a. DNA-binding protein SMUBP-2; TAIR: AT5G35970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2; TrEMBL-Plants: tr|A0A151RV11|A0A151RV11_CAJCA DNA-binding protein SMUBP-2; Found in the gene: LotjaGi6g1v0000200 LjG1.1_chr6 23940 29929 -
2 domain predictions
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LotjaGi6g1v0050000.1
n.a. p-loop containing nucleoside triphosphate hydrolases superfamily protein, putative; TAIR: AT1G65780.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3; TrEMBL-Plants: tr|G7J7W5|G7J7W5_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi6g1v0050000 LjG1.1_chr6 8998937 9009121 -
2 domain predictions
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