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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0462100 |
| Transcript ID | LotjaGi2g1v0462100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170; TrEMBL-Plants: tr|K7K5P0|K7K5P0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0462100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95542630..95544895) extracted from Lotus japonicus Gifu genome v1.2.
GACCGGAGGAAGTATAATAAGTTGAAGTAGGTTAGCGAAGCTTATATATAAAATTTTAAATTTTATATAAATGTTTAAAG GGGGTGTCATCATGCTCTCAAAACAATGGTTAGTTATGAATGACTCATGAGTTCGGTCGGAATAGTTTCCGTTTGCGGGT TGCTGATGGTTGCTTAATCCATTGATGAGGAGAAGTAAATAATTGGGAAATAGAAATATATGGTTGGCTACTGCAGCGTT TGGTTGGAAGGGAGACAATCAACTACAATTGGAAGAACCTTCCTGTCGCAGGCATGTTCTGTGGCCACAACCACAAGGGA ACGAGAGAAGATGTACTCGGATTTGTTGAGAGGATATGTGCAAGATTCAGATCTTGTGAGCGGAAGAGCGGCTCATGCTA AATTCATCAAAGGATGTATTCCTTCATCTCTTTTTCTTGAGAACCATTTGGTCAACATGTATGTCAAAATGGGAGACCTT CATTCGGGTCTCAAGATGTTTGAAGAAATGCCACAAAGGAATGTGGTGTCATGGTCTGCTGTCATGGCTGGTTGCGTCCA AAATGGGTGTCCTTCGGAAACACTTTCTTTGTTCAGCCGAATGCACCGTGAGGGACTCACAAAACCAAATGAGTTCACAT TTGTTAGTGCTCTTCATGCCTGCTCATTGACTGATTCTGACTCTGACTCTGAGAATCTTCCTCCTCCTCCTCCTCATCCT CAGGCTTTCCAGATTTATTCATTAGTGGTGCGGTCGGGATTTGAGTCTAATATCTTCTTACTCAATGCTTTTTTGACAGC CTTAGTCAGGCATGGTAAACTGGCCGAAGCCTTGCATGTTTTTGAGATAAGTCCTGCTGGCAAGGATATTGTGTCATGGA ATACCATGATGGGGGGCTACTTGCAGTTTTCTTGTGACCAGATTCCTGGATTTTGGTGTTGCATGAGCCGGAAGGGTATA AAACCGGATAACTTCTCATTTTCCACCGCCCTCACTGGCTTGGCTGCTCTATCTTATCTCCAAATGGGAATGCAGGTACA TGCACACCTTGTCAAGAGTGGTTATGGGGATGATATTTGTGTAGGTAACTCTCTGGCTGATATGTATATCAAAAATCAAA AGTTGGAGGAGGGTTTCAGAGCCTTTGACGAGATGCCTAACAAAGATGTGTGCTCTTGGTCCCAGATGGCTGCCGGATGT TTACTGTGTGGGGAACCAAGAAAGGCACTTACAGTCATTGCACATATGAAGATAATGGGTGTAAAGCCAAATAAATTTAC CTTGGCAACTGCCCTAAATGCTTGTGCTAGTTTGGCTTCGCTGGAGGAAGGCAAACAAATTCATGGCTTGAGGATCAAAC TTGGAAGTGAGGTTGATGCTTGTGTTGATAATGCTCTTCTTGATATGTATGCAAAATGTGGGTGCATGGACAGTGCACGG AGTGTTTTTCATTCAATGAATTCCCGCTCTGTCATCTCATGGACAACAATGATAATGGCATGTGCACAGAATGGCAAATC CAGAGAAGCTCTTCAAATTTTTGATGAAATGAGGGAGACAAGTACTGTAGTGCCAAATTACATCACCTTCATTTGTATCC TCTATGCATGTAGTCAAGCTAAGTTTGTGAATGAAGGGTGGAAATATTTTTCCTCAATGACTAAAGAATATGGAATCTTT CCTGGTGAAGATCACTACGCTTGTATGGTGAATATCCTAGGCCGCGCTGGACTTATTAAAGAAGCTGTGGAATTAATCCT AAGAATGCCATTTCAGCCAGGTGTGCTTGTTTGGCAAACATTGCTCAGTGCTTGTCAGGTTCACGGGGATGTGGAGACTG GGAAACTTGCAGCAGAACAAGCCATGCTTCAGGACAAAAAAGACCCATCAACTTATTTATTATTGTCTAACATGTTGGCT GAGTTGAGCAATTGGAATGGCGTGGTGATTCTGAGAGAACTTATGGAGAAAAGGAATGTGAAAAAAGTACCAGGATCCAG CTGGATTGAAATCGAAAAGATTTAAATACTAGGAAGATGTGGGTGAAGGAGAACTTATTATTCACATGATTTCTCCCTTT GAAAGTTTAGAGTTTCAGCTTTCCTATTTTATGTTCTACCTTCTAATATACATGAACCTAGTAGCTCAAACAGGCTTGTT TTAGACATTCAGTTCTTTTAGTTTCAATTCTCTATATAAGAGAATTGTTATATTAAATGTCATATATGCTAGCTCACATT AAGATTAACTTTATTAAGTATAAAAC
CDS sequence (LotjaGi2g1v0462100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGCTACTGCAGCGTTTGGTTGGAAGGGAGACAATCAACTACAATTGGAAGAACCTTCCTGTCGCAGGCATGTTC TGTGGCCACAACCACAAGGGAACGAGAGAAGATGTACTCGGATTTGTTGAGAGGATATGTGCAAGATTCAGATCTTGTGA GCGGAAGAGCGGCTCATGCTAAATTCATCAAAGGATGTATTCCTTCATCTCTTTTTCTTGAGAACCATTTGGTCAACATG TATGTCAAAATGGGAGACCTTCATTCGGGTCTCAAGATGTTTGAAGAAATGCCACAAAGGAATGTGGTGTCATGGTCTGC TGTCATGGCTGGTTGCGTCCAAAATGGGTGTCCTTCGGAAACACTTTCTTTGTTCAGCCGAATGCACCGTGAGGGACTCA CAAAACCAAATGAGTTCACATTTGTTAGTGCTCTTCATGCCTGCTCATTGACTGATTCTGACTCTGACTCTGAGAATCTT CCTCCTCCTCCTCCTCATCCTCAGGCTTTCCAGATTTATTCATTAGTGGTGCGGTCGGGATTTGAGTCTAATATCTTCTT ACTCAATGCTTTTTTGACAGCCTTAGTCAGGCATGGTAAACTGGCCGAAGCCTTGCATGTTTTTGAGATAAGTCCTGCTG GCAAGGATATTGTGTCATGGAATACCATGATGGGGGGCTACTTGCAGTTTTCTTGTGACCAGATTCCTGGATTTTGGTGT TGCATGAGCCGGAAGGGTATAAAACCGGATAACTTCTCATTTTCCACCGCCCTCACTGGCTTGGCTGCTCTATCTTATCT CCAAATGGGAATGCAGGTACATGCACACCTTGTCAAGAGTGGTTATGGGGATGATATTTGTGTAGGTAACTCTCTGGCTG ATATGTATATCAAAAATCAAAAGTTGGAGGAGGGTTTCAGAGCCTTTGACGAGATGCCTAACAAAGATGTGTGCTCTTGG TCCCAGATGGCTGCCGGATGTTTACTGTGTGGGGAACCAAGAAAGGCACTTACAGTCATTGCACATATGAAGATAATGGG TGTAAAGCCAAATAAATTTACCTTGGCAACTGCCCTAAATGCTTGTGCTAGTTTGGCTTCGCTGGAGGAAGGCAAACAAA TTCATGGCTTGAGGATCAAACTTGGAAGTGAGGTTGATGCTTGTGTTGATAATGCTCTTCTTGATATGTATGCAAAATGT GGGTGCATGGACAGTGCACGGAGTGTTTTTCATTCAATGAATTCCCGCTCTGTCATCTCATGGACAACAATGATAATGGC ATGTGCACAGAATGGCAAATCCAGAGAAGCTCTTCAAATTTTTGATGAAATGAGGGAGACAAGTACTGTAGTGCCAAATT ACATCACCTTCATTTGTATCCTCTATGCATGTAGTCAAGCTAAGTTTGTGAATGAAGGGTGGAAATATTTTTCCTCAATG ACTAAAGAATATGGAATCTTTCCTGGTGAAGATCACTACGCTTGTATGGTGAATATCCTAGGCCGCGCTGGACTTATTAA AGAAGCTGTGGAATTAATCCTAAGAATGCCATTTCAGCCAGGTGTGCTTGTTTGGCAAACATTGCTCAGTGCTTGTCAGG TTCACGGGGATGTGGAGACTGGGAAACTTGCAGCAGAACAAGCCATGCTTCAGGACAAAAAAGACCCATCAACTTATTTA TTATTGTCTAACATGTTGGCTGAGTTGAGCAATTGGAATGGCGTGGTGATTCTGAGAGAACTTATGGAGAAAAGGAATGT GAAAAAAGTACCAGGATCCAGCTGGATTGAAATCGAAAAGATTTAA
Protein sequence (LotjaGi2g1v0462100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGYCSVWLEGRQSTTIGRTFLSQACSVATTTREREKMYSDLLRGYVQDSDLVSGRAAHAKFIKGCIPSSLFLENHLVNM YVKMGDLHSGLKMFEEMPQRNVVSWSAVMAGCVQNGCPSETLSLFSRMHREGLTKPNEFTFVSALHACSLTDSDSDSENL PPPPPHPQAFQIYSLVVRSGFESNIFLLNAFLTALVRHGKLAEALHVFEISPAGKDIVSWNTMMGGYLQFSCDQIPGFWC CMSRKGIKPDNFSFSTALTGLAALSYLQMGMQVHAHLVKSGYGDDICVGNSLADMYIKNQKLEEGFRAFDEMPNKDVCSW SQMAAGCLLCGEPRKALTVIAHMKIMGVKPNKFTLATALNACASLASLEEGKQIHGLRIKLGSEVDACVDNALLDMYAKC GCMDSARSVFHSMNSRSVISWTTMIMACAQNGKSREALQIFDEMRETSTVVPNYITFICILYACSQAKFVNEGWKYFSSM TKEYGIFPGEDHYACMVNILGRAGLIKEAVELILRMPFQPGVLVWQTLLSACQVHGDVETGKLAAEQAMLQDKKDPSTYL LLSNMLAELSNWNGVVILRELMEKRNVKKVPGSSWIEIEKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 155 | 136 | 1.8E-19 | ||
| PANTHER | 51 | 149 | 99 | 5.5E-100 | – | |
| ProSiteProfiles | 70 | 100 | 31 | 7.805 | ||
| TIGRFAM | 75 | 103 | 29 | 0.0015 | ||
| Pfam | 100 | 148 | 49 | 1.5E-8 | ||
| ProSiteProfiles | 101 | 135 | 35 | 10.468 | ||
| TIGRFAM | 103 | 137 | 35 | 3.8E-6 | ||
| Gene3D | 165 | 266 | 102 | 3.1E-12 | ||
| ProSiteProfiles | 184 | 214 | 31 | 6.566 | ||
| Pfam | 189 | 209 | 21 | 1.4 | ||
| PANTHER | 204 | 375 | 172 | 5.5E-100 | – | |
| ProSiteProfiles | 216 | 249 | 34 | 6.314 | ||
| ProSiteProfiles | 250 | 284 | 35 | 6.237 | ||
| Gene3D | 267 | 373 | 107 | 8.8E-17 | ||
| ProSiteProfiles | 285 | 315 | 31 | 7.388 | ||
| Pfam | 290 | 316 | 27 | 0.087 | ||
| ProSiteProfiles | 316 | 350 | 35 | 9.295 | ||
| Pfam | 319 | 348 | 30 | 1.2 | ||
| ProSiteProfiles | 351 | 385 | 35 | 5.766 | ||
| PANTHER | 368 | 582 | 215 | 5.5E-100 | – | |
| Gene3D | 374 | 449 | 76 | 2.4E-9 | ||
| ProSiteProfiles | 386 | 416 | 31 | 8.035 | ||
| Pfam | 391 | 416 | 26 | 7.9E-4 | ||
| TIGRFAM | 391 | 416 | 26 | 7.4E-4 | ||
| Pfam | 417 | 464 | 48 | 9.6E-9 | ||
| ProSiteProfiles | 417 | 451 | 35 | 10.928 | ||
| TIGRFAM | 419 | 448 | 30 | 3.2E-7 | ||
| Gene3D | 450 | 590 | 141 | 6.0E-15 | ||
| ProSiteProfiles | 453 | 488 | 36 | 7.344 | ||
| TIGRFAM | 455 | 489 | 35 | 0.0022 | ||
| ProSiteProfiles | 489 | 519 | 31 | 6.665 | ||
| Pfam | 493 | 516 | 24 | 0.051 | ||
| ProSiteProfiles | 555 | 589 | 35 | 6.752 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0462100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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