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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0000700 |
| Transcript ID | LotjaGi3g1v0000700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase MARCH8; TAIR: AT1G50440.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8; TrEMBL-Plants: tr|C6TC27|C6TC27_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0000700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:142732..146264) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAATTAGCGTCAAACAATGACAAGGAAGAGTGTTCAGAAACCGAACCCATCTTGAATCAGCAAGCATCATCCAGAGA AGACTCCTCCTTCTCCTGTGAAATTATTCCTGCTGCCAACAACAACAACGATTTACAGAATGTTCATGTTGTTGATGAGA CTTGTCATCTGGTAAATGCAGATCAGCCACAATGCCGGATATGCCTCGATATTGGAGGTCTCAATTAATTAATTTATTCA CACCCTTTCCCTGAATTTATTACACAACATGAAATTAACTTCTTGTGAACGTGGTTTTTTTTATAGGAGAAGATTTAATT GCACCGTGCCATTGCAAAGGTACGCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCTACCAAGGTAAGTTT ATTTTTTCCTTCTCCTTCATCTTAATATCTCTAATGGTATGCTTATCTATTTTCCATTCCTTTCTTGGTTCTGTAAAGGT GTGCAGTATATTTTTAATTATATGATGCTTATTTATTGAATTTTTACTTCTTCTGTTGTACTAGGAGGGCTTTGCTTTTT CTCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGACTAAAATTT CAGTTCCTTGTTGCCAGGGATCACGCATTCATTTTCATAATTGTTCAACTGGTATGTCATTGATTATAATCTCATTTATG TATTGTGAAATTGTTACTCATGTTTATGACATTACTTTTTTCCCTTTCTTTTGGTTGACATGAACAGTACCATAGTATTC ACCATTCCTCCCTATCTAGTGTTCTTCAGTCTTGCCCACCGGTAGAACTTAGAAGCCCCTAGGAGTCTATGTAACTGCAT ATATGTAAAGATCTGCTGTGTAAATTCTGCTAATTCTTGGAGGAAATTTCAGTTGATAGTTTTCCTCTCTGATTGAACAA ATTATTCTATGGAAACTCATTTCAATTTCTTTTCTTGCTCTGTAGTAGATAGTAGTGCAGTAAGGAAAGAAACAACCTTA GGTAAAAGAGGCCAAAGTCTTGTCTTAGGTGGTTTGGGCACATGTGGAAAAGACCCAATAAGGAGGGTTGACAGAGGGAG GATACTCAAGTAGATAGAGCGTTAGAGGTAAAGATATGCCAATGAAAACTATAAGCCAAACAATTAATGGTCAGCAATCA ATGCTCGGTCAATGGCCAACGCTTGTACAGAGGATATGAGATGTGTGTCTTGGACACCTAAATACTGAATGTGAAAGAAT GAGAGAAATGAAGGTTACCCAAGTTTGGCTGCAATGAAGGCAACCCAGTTTCAAGGCCGCAATGAAAACGACATGGCTTC AAGGCCACAATGAAGGTGGCCAATGGTTGAATATTCGGGCGCAATTAAGGCTTCCCTCACTAGGTCGCAATGAAGGCGAC AAAAATTCTCAGTACCAGGGTGCAATTAAGGCAGTCCTTACTAGGTCACAATAAAGCCGTCAAAAGTTCTCAGTATGGAA TGAAGGCAACTGACGGTCAACGCCAGTGAGCTAGTCTAGGCGCAATGAAGGTAGGCCTCGATAGGTCACAATGAAGGCGA AAAAAGTTCTTAATCCGCACTGAAGGCACCCCTCATAGGTTGCAATGAAGGTGACAAAAGTTCCAGGTCTGCAATGAAGG TGACTAGGGCTAAGTCGTGGAAGCAGAGCCCCTTGGGATCAGGAGCTGTTAGAACAGAGTTCCAAATTTAGAGGAACTCA ACAACGGGATAGTGTTGGCGCCGGTCATGAAGGGTGATATTGCCCTTATACTTTGTTGAAATTGGAAATATTAACTGATT GACGTGTATTACGCTTGACTTAGAATTTCAATATATAGGTAAGTGTCGTAGTCTATCTCAACAATAGGCTTGCATAGTCT ATCTCAACAATGGGTTTCCTAGTCTATCTCAAACACTATCAACAAAATCTAATCTGTCGGTCTGTCCTTATCATAACACA ACATATCTAATATCTCAACAACATTCTTCCTCTAATTAGTGTATTTATCTCGCTGTCTATGTAGATCCAATTGACATTAG TGGGAAAAGGCTTGGTGTTTGTTGTTGTTGCTGTTGTGTAAGTTCTTCCATTTCAGAAACTTGCGCTGATAAAATTCAGC ATTATAGGCTGTAGCTCCTAAATAACATTTTTTGGGGTAGCTTAAGAGAGGTAACACAATTGATGAGGTGGCTAAGTTCA AGAACTTCCTTTTTCTTTGAAAATATGGCATATGATTTTTTCTTGGTTGTGGGTGGCATAGCCCCCTAAAAACCCAAGCA GCCTAACAAGAGCCTGAAATTGGTTTGGTCTACAACTCTACATGAGTGATGCGGTTGACTCAATAGACTCTGAAGATCCA AACCCACCCAAATAGATTGTTTGATGGGATACTATTACTACCTCTGTAAATTTATACAAAAATATACACTTGAAAGAATG TGTATTATGTTCTTTACCTTTTCTAATTTTTACAGGTTGTTGCTTTCTTGGGAGTGCTTGTTTACAAATTCTACGGGGAT GAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGGTATACCCCTTGCTTCTCCTCA GGAAATTTCATAGGCAATGTTTGCAGCTTTTTCATTCACTTGTGACTATTTCATGCTAGGAAGTTATAGTTTCTGAATTA GTTGGTGAACTCAATGGTGTATATGTATGACTGTCATGCTATCTTAATCTACTAACTGTATACATGCAATGATTGTTTGA TTATATTGCTTTATTTTGCAGTTCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGT CAAAGAATCAATGAGCGCCACTACCATGTTCTTGCCAAACAAGAACTGACAAAGGTCTGCTATTTAAATGATGATTTCTC ACCTTTTTTACTTACAATCCCCAGAAATGAAACCTCTTATATGTAGAACTAGTAATATGATTGCTACTAAACAGGTATTT TGGGTCAAAATATTTTCTGGCTTAATGTCTTTCTTTGATTTTATTCATCATATATAATACAAGACATTTACAACTCATAA TGATAATTCATTATTTGTGCGGCCTAAAATAGGAATGTAAATCCATACAATACATGGATTGATGCTATTTCTAATTAATA TTAAATAGATTGATTATATTCTTAAATAGATTAACATAAAATAGGAAACAATGATAATGACATATTTCCTCATTTACATT TTGGTCATATGATATGCAATTTTAGGGAATGAATGGTTTAAATATTGGTTCTTATATCATTTGGATTATAATTGATTCTG TATAAAGATCATACCAATTTACTTATAAAAATTTGAAGGTATTCAACTCTAAACTTTGTTCTTTACTTTTTCAATGCTAG GAATATGTGGTAGAAGATCGAGAACATGGAAAGAATGTGCCTGAACTTGATCCGAGCCATGTGACAGAACTAAGGATGTT GGGCCTTTACTAG
CDS sequence (LotjaGi3g1v0000700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATTAGCGTCAAACAATGACAAGGAAGAGTGTTCAGAAACCGAACCCATCTTGAATCAGCAAGCATCATCCAGAGA AGACTCCTCCTTCTCCTGTGAAATTATTCCTGCTGCCAACAACAACAACGATTTACAGAATGTTCATGTTGTTGATGAGA CTTGTCATCTGGTAAATGCAGATCAGCCACAATGCCGGATATGCCTCGATATTGGAGGAGAAGATTTAATTGCACCGTGC CATTGCAAAGGTACGCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTC TCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGACTAAAATTTC AGTTCCTTGTTGCCAGGGATCACGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTTTAC AAATTCTACGGGGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGC CATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCGATAATATGTGGTCAAAGAATCAATGAGCGCCACTACCATG TTCTTGCCAAACAAGAACTGACAAAGGAATATGTGGTAGAAGATCGAGAACATGGAAAGAATGTGCCTGAACTTGATCCG AGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG
Protein sequence (LotjaGi3g1v0000700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLASNNDKEECSETEPILNQQASSREDSSFSCEIIPAANNNNDLQNVHVVDETCHLVNADQPQCRICLDIGGEDLIAPC HCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVY KFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHGKNVPELDP SHVTELRMLGLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 252 | 252 | 4.9E-147 | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 141 | 141 | - | – | |
| PANTHER | 1 | 252 | 252 | 4.9E-147 | – | |
| Gene3D | 50 | 124 | 75 | 4.1E-16 | ||
| ProSiteProfiles | 57 | 119 | 63 | 19.533 | ||
| SUPERFAMILY | 60 | 116 | 57 | 2.74E-14 | – | |
| SMART | 64 | 113 | 50 | 5.0E-15 | ||
| Pfam | 65 | 112 | 48 | 4.9E-10 | ||
| CDD | 65 | 113 | 49 | 7.56266E-18 | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| Phobius | 161 | 179 | 19 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 180 | 203 | 24 | - | – | |
| Phobius | 204 | 252 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0000700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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