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LotjaGi3g1v0002000.3

Overview

Field Value
Gene ID LotjaGi3g1v0002000
Transcript ID LotjaGi3g1v0002000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Vacuolar cation/proton exchanger, putative; TAIR: AT3G13320.1 cation exchanger 2; Swiss-Prot: sp|Q5KQN0|CAX2_ORYSJ Vacuolar cation/proton exchanger 2; TrEMBL-Plants: tr|A0A151S6K9|A0A151S6K9_CAJCA Vacuolar cation/proton exchanger 2; Found in the gene: LotjaGi3g1v0002000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:266954..274541) extracted from Lotus japonicus Gifu genome v1.2.

TCCCAGTCATGTAAATGTAAAGCTTAACGCAAAAGAAAATTGAAAAAGCCAGACAGAGAGAGAGAGAGAGAGAGAGAACT GTGAATGAAGTGATATTTCGAAGAAGCTTCCCAGGTGTGACTTCCCACTTGCCGGCCATTCAACGCCATTATACATCTCC ATCTATTTTCATTCATCTTCTTCTTCTTGTTCCTCTAGATTTCAGATTTGAACAAGTTCTGCTACTACTTCTTGTGCTGC GGGCTCCACCTCCACCTATTATTGGAAAAAACAATACTCAAATCAACAGTACAGACCTGGATCCATCTTCTTCTTCTTCT TCTTCATCTCTATTTCTCCTTACTCAGGCAGGCACGATCTGATTGATTTGCACAAACTTCCTTTGCTTCTGCATACTCAC TCACTCTCATGACTCATGATCCAATCCATTCTATTTTGTTTCAGGATGGGTTCTGTATCTGGAGAAGATGACAAGCTCCA CCTTGATTTCGACGATGAGGAAGCTGCTCCCTTCAGCTCTTCTTCACCATCTTCTTCTGTCTCCAAAGTTCATCCTTTCA ATTTCGAGACCGCAGTTGCTGCTTCATCTCTGTTTAAATCTCTTCGGGCAAGACGTGTCAGCAGGAGTGTGTATCTTGTT TTGATTAAAGCCAGGATCAACGTCTTGCTACCCTTTGGTCCATTGGCCATTTTGCTACATTATATCACTGGAAAGCATGT ATGTATTGTATGCTAATTCACCCACCTTCTAATTATGTTTGCTCATCTTGCCTGCTAATAAACTTACTTCATATCTGTCA GGGATGGGTCTTCTTGTTCACCTTATTAGGTATTGCTCCTTTGGCAGAACGTTTGGGTTATGCTACTGAGTAAGTCTAGT CAATTTTATTATAGACATGTCCTTTTCATCCCAGTCTAGTGCTCATGATCAATTTTCTAATCTCTGATGCAGGCAGCTTG CGTTGTACACAGGACCCACAGGTATAGTACAAATCTTTCTTGTATCAGCAACAGAGTATGTTATATAAGGTTTCCCATTA GAGATTAATTCAATAGGACCTAGTTTCTGCAAGGCTTGTACTGAGTGCATAGAGTCTTTTGTCAATTGAACTGACCTTTT CTGGTATGTGCAGTTGGGGGTCTGCTTAATGCCACGTTTGGCAATGCAACTGAAATGATTATATCAATTTATGCTTTGAA AAGCGGTATGATTAGGGTTGTTCAGCAAACTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTCCTTGGCTGTGCAT TCTTTACCGGTGGGATTGTCCACTACCAAAAAGTTCAGGTTTTCAATAAGGTATATAGCATGACCTCATTGAAATTATTA CACATTATTGTTTCTTCCCATTTGTGTCCTCTACATTTCACAGAATTCACATTATACTTGGCCCTTGCAACAGGCAACTG CTATTGTCAATTCTGGGTTGTTGTTGATGGCTGTAATGGGATTATTATTTCCTGCTGTGCTTCACTTTACTCACTCAGAG GTTCATCTTGGGAAGTCCGTATTATCTCTATCAAGATTTAGCAGTTGCATAATGTTAGTGGCATATGCAAGCTACCTTTT CTTTCAACTTAAAAGTCAGCACAGTTCTTATAATCCTGTGGATGAGGTTAGTTCTTTTGCCTCATCTTTTTTTTTTTTCT TTTTAGCATTATCCCTTAGGTTTGTGGTGTGCTCAGGGTGAACACAGTTTTTTTGAATATTGTTCACTTGATTAATAGGT ACATAGGTGATTTACAATTTATAGGTTTATATGCCAATAAAAGAAAATAAATGTGAAATCCTTCCTAATGAAGGGGGAAA TAATACCGTGAAAATATATTTCTATTTCCCCCCTAAAGTAGTCCTAAAGTAATGCTATGTAGTATGTACATGATTTATAA CACTCCCCTCAAGGTGGTGAATGGATATCAGTCATTCCTAACTTGCAAGTATGTTCCAAAAATAGTTTGGTTGACAGCCT TTGGATATTATATCTATTAGCTTGTTTCTGAAAGGAACATACGCTATTGCTATGAAGCCATTATTCAGGTTCTCCTTAAT GAAGTGTCAATCTATCTCAATGTACTTCTTCCTATCATGTTGAACTAGATTATGAGCAATACTATTAGCTGGTTTGTTGT CACAAAATAATTTCATAGGAGCTTCATACTTAACCTACAAGTCATCTGAAACAATCTCCATCCGTAGTAGGTCACAAATT TCTTGTACCATGGCTAGAAATTCAGCTTCTGTGCTTGACCGAGTAACTAATTCTGCTTCTTCTCCATGTGTCCAGATTTT CACACGAAAGGCTGCATTCATGGTCTAACTCCACCTCTTATAAACCGTAACCCTAAACCTAGCACGGCTTTATGATACTT AAGATTTTTTATCTGTAGCTTGGATGTGTTCTACCCTGGGATCATGCATGAACTGACTTATAATAATAACAACACATGCT AATTCAAGTTTAACATGTTCCAACTATATCAATTTCCCTACTAATCTCTAGCTATGAGTTTTATCAATCTTAGGATTCTT TGTATCTTCTCCATTCTATGATTATGCTAAATGGGAATACTTGTATCTTTAAATCCAAGTTTGTCAGTCTCCTAAAAAGG TTTGATACACACTTCCTCTAAGAGACGAAATTCCCTTGTTTAGAGTATGCAACTTCAATCCTAAGGAAGTACTCCAGTCT CCTCATGTCTTTCATTTCAAAGAGTTAAACTAGTATTGGACATTGGCTGGCCTCCATTTTTTCTAGTAGGGTCTTACTAG TTACTACCCAGCCCTAACCCAAACTTAAAAGAAAAGGAAAGGTAGATAAATTTGGATCCCTTCTAAGAGGTTTTATTTTG ATCACTAGATACAAATATTTTAATTAGTTGAAAATGTTATCCAAAGATATTAAAAGATAAAAATAGGATAAGTGACTAAA TATGTATTTCATGAAGGCAAGTACTTCAATGAAATTTCTTAATACTTTTGAAGACAAAGGAAAACCTTAAGGAAACAATC ATTCAATTTTGTTTCATCAAATCAGACTCAATATGATCACATATCAGTATGATTGAACTTCCTCTAAGACATATATGACA AAGGTATGCGACTCTTTAGTTTGAGAGATGTTAGCTTGAGTGGAATTGTCTGACATTTATAGAAAAGTGAAAAGCATTTT TTTATGCTTTTTCTTTTTCGATGGGGGATTAAACCTTTTTTTTCAGTTAACAGAATATGAAATTATTAGATGTATAATAT TTTTTAAAATATGAAAGAGTTAGTGTAAGTGAGATTGTGCCTACCATATGCAGTTTTTCTCTGTCATTCGGTGGTCCCTT TACACTTAATCTCTATACTGTATAATGTAGGAAGGAGATAAAAGCGAAGATTGTGAAGAGGAGGAAGAACTTGAATTAAC TCAATGGGAAGCAATAATCTGGCTTGCTATTTTGACAGCATGGGTATCTATATTGTCTGGGTACCTTGTGGATGCCATAC AGGTATTGTTCTGGCGTCACTGTCGGGATTTTTTTATCCTGTTATTCGTACCCTTAAAGCTTACTCCCTCCGGTCCTATT TATAAGCATGAAAGAGAAGAAAAATCTTGGTCCTTTTTATAAGAACCAAATGAAAGTTTGAGCTATATTAATTATTTTTT TCCAATGATGCCCTTATAATTCTAACTTGTAGAATGTGTCTCATTAATTATTCTCTCTCTTTCCCACTTTCCAACACGAA TAACAAAGGGTAATTTTGGAAGTTTATTTTGATTCAAGACAAATTTAATACATTTTATCTAGTTTTACTACATTTCTTAA ACTATGTGAATTTTTTTTTTATTGCTTATAAATAGGACCGGAGGGAGTATATTCTTGTGGAATGTTGAATTTGGGCCTTT ATATTTTGCTCTTAATTTTTCTTTCATTTTTCAGGAAACTTGTTTTTAGGTATCTGCTTGTTAGAGGTTTATTAGGAAAG TATTTTTTTTGGGTGTTGATTAGGAAAGTATATAAAAGGGGTAATAAGGATGAGTCGAAAAATATTGTGAAATACTGAAG TTAAGAGAAAATAATTGAAGATATTAAATATAGTAGCTAGGAGAGAATCACTCGAGAACGAAGTTATTAGAAGTAAATAT CGTTAAATATTGTAATTAGACGAGAATCATTTTAGAGTTATTAGAAGTAGTTATTGTTAAATTTAATAATAAATAATTGT TCTATAATGGAGTTAGGATGATTAGAAATAGGACAAAATAGATAATTAGAAAAAGATACTATGTTATAAATAATATAGGA TAAGAGTGGGAAACTATTGATGCATTTGTTAGATGCTCTTTGAAGCACCTATAAGGAGGGTTGATCAAATGGAAGCTGAG TCCAACAGTTAGGGGTAGAGGGATACCTGGAAATACTTTAGGCCAATTCATTAAGAGGATTTTAGAGTGAAATAATCTGT CTATTAACTTCATATATGACAGGGTATTATGGTGTAGACCAATTCATATAGCCAACCCCACCTTGTGAGAAAAGGTTTAG ATGATAATTATTTACAGATATTAGTGATTATATATATACACACACACATACATTTACGTTCAAGTATGCTGTATATGTGA GGTGTATTGCTCTGATTAGTATCCAGTGGCTGTTTTTCTCCCATAAAGTTTTTAAGTTGTGTTATTCTTTAAATAGTATC ATTGTTTATGTTACATTGGTTTAAGTAGCTGTTTTTTATAAGCTGATTCTTGAACTTTTTGTGTTTTCGCTCTCTTGCAG GGAGCATCTGAGTCAATGAATATGTCAGTGGCTTTTATTAGTGTCATCTTGCTTCCAATTGTAGGAAATGCTGCAGAGCA TGCAAGTGCTATCATGTTTGCTGTGAAGGATAAGCTTGTAAGTGACTTCTCAAAGCCTACTCTTTATTCTATTGAATCTG TTTAATTTGTTAATGGATTTGATTTCTCCTCAGGATATCACAATTGGAGTTGCCATTGGATCATCCACACAAATATCTAT GTTTGTGGTATGGCCTTGAACTTTTATTAAATCATTATTGGGGGGTATACCTTTACTATATCTTTATATGATTAATTAAA CTAACCTGGATTTCTCAGTCATATGAAGATGTTTCTTGAGTTTATTAACGTTTTAAAACAGGATGACGGTCACAAGATTG ATGATTCTTATTCTCTTGAAAACTGTAGATCCCCTTTTGTGTGGTTGTTGGGTGGTGCATGGGAAAAGAAATGGATTTGA ATTTTCAACTCTTTGAGACTGCCACACTTTTTATAACCGTGCTGGTAGTTGCATTTATGATGCAGGTATGTGATTTCAAC TTTGTCCTGTTGAATTGTGTTGATAGCAGTTTAAATGCTTCGTGACCTTAATACGTTCTCTCTATTCTATGTTTAGTCAA GCCAAAATAAAGTCTAACTAGCAAACATACCGGTGCAATAATTTGTGAAGTATAAAATGTTAATTAAATATAAAAAATAA AATGCTTTAATTTATAATTTTGAAAATTTTCTAATTTTTTGATGATTTGCAAACATCTCATATTGTTTAATATTGATTGA TTAATGAAGCTCAAGTCTTGATTGAAGAAAATAAGGGAGATGTATTGGGATTTGGAAGATGTATTGTTGAAGAGTGAAAA ATCTGAATGACGTATAGAGGATGAGGGCGCTTAGGAAAATTCTGAATCAATACAATTATTTGTTGTATGTCTGATATAAA AAAATCATATATGAAGCTTCTCCATGTCGTTATTGCTTAGGAAACCTAAATGAAGAATTAGGCCAAAGTAATAACTGCTA TCCTCTCTCTCACTCCCCTTCTCTCTTTTTCTTTTTGAACACTGAATTCCAGAGCTCATTAGTGTTTTTGTGTGTGCGCA TGTCATTTAGCAGGAAGCATGAATGTAGGTGTTTTCTAGTAGGAACACTAATAAGTTCTGAACCAAAAACAAAATAAGAA ACATTCATATGCTGTCCTTTGAATCTGGAGTTAAAATTATTAATTCTTGTAAAGGATGAGGTGTAGGTGTTCTCGGTAAA TGTATAATATGCACAACCTGTAAATTTTAATTTTTTTTGGTGAAGCATATTCCCATTTTGCATAATTATGTGGTTTTTGC ATTGTGCATCTCTTTATTTTATGATAGATAACTGAGGAAAAATCAGGTACGGAAGACCAGGTAATTCAATAGTATAATAA TCTGTATAAATGCAATGTGTTTAGGATTTCAGGCAATTAGAGCAACATGTCATGAGAATCTATGTTTAGTGTTTTGGTTA TTTTCATTCCACTAGATGGAATATTATCTAGTCTCATGGTCTGGTAGTCTCGTTCTGGGCCTTCTATTTTAAAACAAATA TCTTGCTACGTAGATTTTATACATATGTTGAGAAAGCATAAATGTTGGTGTCCAATATGCAGTTAAAATGGGGTAATTAT CACTTATCTCTCATTCAGTTTAGTTAGGGTCAAAGTTCCTTTTGAGTTGTTTCATTGGCTTTTTATTGCAACTTTCTTCA TCCATGAGTGGTTGGGTTCATTTAGCTACATTTTCTCTTGTTGTCTCTATTATTTGTGTGAGACTAATATCTTTAAATTG CTTTTAATCTTACAGGAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTCATTCTATGCTATCTTATAGTTGCTGCCAG TTTTTTCGTACATGTAGACCCTAAAAGTGGTGAGTTCACCGATAATATACTGCACAGGTTCCTAGTAGGTTATATAATGA GGCAGAAGCTAGATGAATCCCCTCAAATTCTCTTAAGCTATTGCTAAGTAATGTTCCAAAAGCCATGCCTAGGTTTCTAT TGCCTCTCAAAATATGCATATATTTTTTGTCAAATGGTTTGAACTTCTGCCTTCGAATCATGATGCACGTTTATGCTCGA CCAAAAATGGATTAGATTGGATTCATTTAAAACTCGGTATATCTTTCCTAATAATTTGGATATAACTATATTTTTTATAA GATTAAATTTTAGTATATTTCAGCTAGGGTACTTTCTTTCCAAAAGCAGGAGCTAAATAGTCACCCCCTCCAATGATTTT TTGGAAGAGTGAAGTCATTGAACCCATGTTTGTTTTTTAGTGATATGGCACATACATGTATCAACCCTGTGGGAATTTGT TCATCAAATCCGATTTGATAGATGATTGGTATTTATACATTAGACTATTTGGCACATGTATAGTACTTGATGTAATTCTA CCCGTGTAATCTGGTACAGGTGATGACTAGATATATAGTATGGGTATTCCATGGTTGCCCTTTCTATAGTGGCAAAAGTT AGCTGCGAGTTTGAAAGGGTTCAAGAAAATTCTTCAGCTTGCATTCAGCATGGTGTGGGAAACCCAGAAAGTGATCACAA GCAATGCACTGTACTGAAATTTTCAGCCTTGTATTATATTGAATTTTGAAAGCATTTGTTAATCTGTATTATTATTATCT AGTTTTCATTCATTTACCATGAAAATCATAGTCTTTCGCCCGGGTCTCCAATGAATCAAGTTGAAAGT 

CDS sequence (LotjaGi3g1v0002000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTCTGTATCTGGAGAAGATGACAAGCTCCACCTTGATTTCGACGATGAGGAAGCTGCTCCCTTCAGCTCTTCTTC ACCATCTTCTTCTGTCTCCAAAGTTCATCCTTTCAATTTCGAGACCGCAGTTGCTGCTTCATCTCTGTTTAAATCTCTTC GGGCAAGACGTGTCAGCAGGAGTGTGTATCTTGTTTTGATTAAAGCCAGGATCAACGTCTTGCTACCCTTTGGTCCATTG GCCATTTTGCTACATTATATCACTGGAAAGCATGGATGGGTCTTCTTGTTCACCTTATTAGGTATTGCTCCTTTGGCAGA ACGTTTGGGTTATGCTACTGAGCAGCTTGCGTTGTACACAGGACCCACAGTTGGGGGTCTGCTTAATGCCACGTTTGGCA ATGCAACTGAAATGATTATATCAATTTATGCTTTGAAAAGCGGTATGATTAGGGTTGTTCAGCAAACTTTACTTGGTTCA ATCTTGTCAAATATGCTTCTAGTCCTTGGCTGTGCATTCTTTACCGGTGGGATTGTCCACTACCAAAAAGTTCAGGTTTT CAATAAGGCAACTGCTATTGTCAATTCTGGGTTGTTGTTGATGGCTGTAATGGGATTATTATTTCCTGCTGTGCTTCACT TTACTCACTCAGAGGTTCATCTTGGGAAGTCCGTATTATCTCTATCAAGATTTAGCAGTTGCATAATGTTAGTGGCATAT GCAAGCTACCTTTTCTTTCAACTTAAAAGTCAGCACAGTTCTTATAATCCTGTGGATGAGGAAGGAGATAAAAGCGAAGA TTGTGAAGAGGAGGAAGAACTTGAATTAACTCAATGGGAAGCAATAATCTGGCTTGCTATTTTGACAGCATGGGTATCTA TATTGTCTGGGTACCTTGTGGATGCCATACAGGGAGCATCTGAGTCAATGAATATGTCAGTGGCTTTTATTAGTGTCATC TTGCTTCCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCTGTGAAGGATAAGCTTGATATCACAAT TGGAGTTGCCATTGGATCATCCACACAAATATCTATGTTTGTGATCCCCTTTTGTGTGGTTGTTGGGTGGTGCATGGGAA AAGAAATGGATTTGAATTTTCAACTCTTTGAGACTGCCACACTTTTTATAACCGTGCTGGTAGTTGCATTTATGATGCAG GAAGGAACCTCAAATTATTTTAAAGGCTTGATGCTCATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTTCGTACATGT AGACCCTAAAAGTGGTGATGACTAG 

Protein sequence (LotjaGi3g1v0002000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSVSGEDDKLHLDFDDEEAAPFSSSSPSSSVSKVHPFNFETAVAASSLFKSLRARRVSRSVYLVLIKARINVLLPFGPL AILLHYITGKHGWVFLFTLLGIAPLAERLGYATEQLALYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQTLLGS ILSNMLLVLGCAFFTGGIVHYQKVQVFNKATAIVNSGLLLMAVMGLLFPAVLHFTHSEVHLGKSVLSLSRFSSCIMLVAY ASYLFFQLKSQHSSYNPVDEEGDKSEDCEEEEELELTQWEAIIWLAILTAWVSILSGYLVDAIQGASESMNMSVAFISVI LLPIVGNAAEHASAIMFAVKDKLDITIGVAIGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQ EGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 61 61 -
PANTHER 11 431 421 1.2E-228
PANTHER 11 431 421 1.2E-228
Phobius 62 87 26 -
TIGRFAM 65 424 360 3.9E-116
TMHMM 66 88 23 -
TIGRFAM 74 424 351 4.9E-103
Phobius 88 125 38 -
Pfam 93 248 156 5.9E-20
Gene3D 104 313 210 2.6E-23
Gene3D 122 417 296 2.6E-23
TMHMM 123 145 23 -
Phobius 126 145 20 -
Phobius 146 156 11 -
TMHMM 157 179 23 -
Phobius 157 181 25 -
Phobius 182 192 11 -
TMHMM 192 214 23 -
Phobius 193 215 23 -
Phobius 216 226 11 -
TMHMM 226 248 23 -
Phobius 227 246 20 -
Phobius 247 280 34 -
TMHMM 281 300 20 -
Phobius 281 300 20 -
Pfam 282 421 140 2.7E-20
Phobius 301 311 11 -
Phobius 312 339 28 -
TMHMM 313 335 23 -
Phobius 340 344 5 -
Phobius 345 370 26 -
TMHMM 345 367 23 -
Phobius 371 381 11 -
TMHMM 380 399 20 -
Phobius 382 400 19 -
Phobius 401 405 5 -
Phobius 406 427 22 -
TMHMM 409 427 19 -
Phobius 428 434 7 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Biological process Calcium ion transport The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Molecular function Cation transmembrane transporter activity Enables the transfer of cation from one side of a membrane to the other.
Molecular function Calcium:proton antiporter activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + H+(out) = Ca2+(out) + H+(in).
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0002000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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