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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004400 |
| Transcript ID | LotjaGi3g1v0004400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter, putative; TAIR: AT1G15960.1 NRAMP metal ion transporter 6; Swiss-Prot: sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6; TrEMBL-Plants: tr|A0A151S6L4|A0A151S6L4_CAJCA Metal transporter Nramp6; Found in the gene: LotjaGi3g1v0004400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:582019..588868) extracted from Lotus japonicus Gifu genome v1.2.
GATGAGTCTAAAATATTTACTATAAATGCAGGGAGATAGTGAAAGTACAAATCAGTTCAGTTCCGAAACAAACACTCACA AAATCAGAAAAGAGAAGACAGAGTGGGTCTCACTCACTGTGTTCGTGTTACGGCACCGCAGTACTGTCTTCATTCTTTGT TTGGTATGCAATGCAATTCAATCTTCTCTTCCATTTCAGTGTTGTCATTTTCATTTTCCTTGTGTTGCTCTCTGTTCCCT ACAAATCTAATCAAACCCTCCCTATTCTGTCTTTGATCGATGCTTTCAGCTAATTATATTAGAACAAGTGATGCTTAAAT TTCAACATTTGAAATTAGACACTGCATGTTGCTCTTAATAATATTGATCTTAATCAGAAATATTAATTTTTTATTCAAAT CTAGAATTGGGTTTTGCTTACTTGATCCTGAAATGTCAATATTCCATTTGTATTCATTTTACTGGTGCAGATACTGAGTT GTTTTAGACACACAAGTTGCTGTTCATCATTTTGATCTTAATTGGAAAGATTACTTTTTTACACGAATCTAGAATTGGCT TTTGCTTAACTCTGTTTTTCTGGCTTATTCCTTGGCTCTGAAGATTCGTTTTGGTTGGAATTGGATCCCAGTTGCATGAA AGATTTGTTTTGGCTGCAGGAAGGAAAAAAAGAGAACATGGCTGTCACAGGTTCTGCTAATGGGCAGCCACAATTCATTT CCAGCTCTGGAAACCGAAGCCTTTCCAATGCGCCACTCATTGAGAACTCAGATACTCATCAAATTGTTGTGCCTGATGTA AGTTTGGGATGTCAATCAAATTGCTACCTATGTTTAAGATTAAAGATTCATTGTATCGAATATCTTATATACTTTGTTTG AATCTGAATTTCATGATATGGGAATGGAATTTATTTATAAACAACAAACAAAATGCTTCCATGATCACTTCTTCCTCCGA CCAGTTAAATTTTGAAAATATTATAACACATAAAATATTAACCGAACATTTTGAATTTAGGTAGAATAGAAATAGCACAC TTAGATATAGTATTCTTTGGAATATCATTCCCAGAAATGCAGTTGAAAATCTTGACACAAATGCCTTCTAAGGAATGTTC CAGAATTTTTTTTTCTATTCCCATGTCATGTAAGAGTAGGGAATAAGAGGTTGTTCAAGCCTGACTGATTTATTTGAATC TCAAGTTCAACATGTTTCCAATTAAATCAAGGTTCGAGGACGAACCTTCTATAAGGAGAGAATGTGATAAGAACTGGCTA AGAAAGAAAGAAATGGAAGAAGAAATGAATGAAAGGGTCCACACCAATGCAGGGTGTTATATGTCAAGACTCAAGAATTG CATCTCTGGTAACGGTTAAGCTTTTGGAAATGAGATGAACAAGAACGCTTACCATCTTGCCAAAATCTTATGCTGGCAAA GGCGCAATTCTTGACATATAATGCATAAAATGCAGGTCATTCCCTATTATGTATGGGCCACTGAGTTGAACCCAATCGAC AAACCCAACATGCATCCTCCCGACCATTTGGGCATATCACTGTTGATAGTTAATGTGTAGTCATCATGTGTGCTATTTGC TCAGCAAATCTCCAATTAAATTGATTTCACTCATGCATGAAATGGAATCTGAGTGCTTTGATTATAGTTATAGAGTACAC TGCAGTAATGCTAATGCATATACTGTCTAATGTGAAGTTTGGTTTATTTGATAACCACCATTTATGTATGTTTTTTTATT TTGTAGAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGG AAACTGTAAGATCACACTATTCATGATTTTCTTCCTTAAGAAAAGGAAACATATTCCTGATATAGTATGCTTATGGTGTT CTTATATTTACTTGCAGTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGGTACTAAGATGTGTCCTATAGT ACCTAAGTGTGCTCAAGATTTCTTTTATGAACAAAACTTATATACAGTTCCATACATGCTGTTTATACTGTTGTCTACTT ACAACATGATACGTGGGTTAAAAAATGGGAAGTTGAGTGAAGTTTTTCATTAATAGGATATTAGGTAAGTTTTGTCTCTT CTTTTATTTCTTAATAACCTTTTCTTTTTTTTCCCAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTA TTCAAACAATGGCAGCCAATCTCGGGGTGGTCACAGGTACTTGATTTGATAACTTTATTTTGACTGAAAATTTCGTGTGT ATCCGAGTGGTAAGCCTTCATTTTTGTTCCTGATTCTTTCAATTCTATTTGCTGTTTGCAGGAAAGCACTTGGCAGAGCA TTGTAGAACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTC CTGAAGGTATAGAGATGAATTCAATATTTTGAATTGTTTCAAATTATTTATATTTATTAATTGTGTAAATATTATAAAAC ATTTTCTTCTGGGGATTTGTTTGTCTTCTTAGGATGTTGAATAGAGTTTACTGATTTAAACATATCTCCCAACCAAGGTA TTGAATAGATTCAAATATTCAATACATAACTCAATCAAGTGATTGTTAAGCTCTATGGTTTAAAGAAGTGATGCCTTTTC ACCTTCATGTTGTTTTTCTCCACTCATTTTACTACATGTTAATGAAAATAAAAAGAACTTCGTGTCAGGGTTACTAGAAA TCCTACTAAAGAACTACAGTGTAAGTCAGATGGGAAGATTATCAAATTTTAAACACAAGCCATAATTTTTCATTTATTCT CTTCTCAACTTCTATTTATCTCGAAATTTATTGGACATATGCAGTCATTGGGACCGCCTTCGCACTGAATATGCTCTTTA ACATACCTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTAGTT TGCTGTATTTCATTCTATGGTTTCATGTTATGAAGAGAAGTTTTGCACCGTGAACAAATTTATGGTTGTCAATGCATGTT ATGTTAGTACTATATATAAAAATACATCATGAGCCTTTTCCTATTGTTGTTGAACAGGTTAGGAAACTTGAATTCTTGAT TGCATTTCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATGCTAAAGAAGTTGTGA GGGGTCTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCG TGGGTTCATGTCTTCTAAAGCCATTTTAATTTTGTTTCCATTTAGAATGTATTCTCATGCTATGCTTCTTTATACATTTC CCCTCAGGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTTCGTGGAATCAAAGTA AACATTTAAACTTTTGCATGCATGTTTATTTGTTTTTATTTATTTATTCAAGGTTTATCTCTGATCCAATTAATGTCTAA AGGTTGTTGGCCTATGGATACTTGAACTCTTCCCATTCACATCTGTTCTTTAAGAATGTGGTTGTAGACTATGACCTTAA ATTTATCAAAAACAATGCTTCTCTTTGATAAATAAAGTATCCTAAAGCAGGAAAGGTTATTGAAATTTGAATTATTGTTG GAAGGTCCTGTTAAGTTTTTAATTTTGTGAACGTTCAGATAAAATGATCCAACTTAAAGCCAAGTCGTAAGCGTGTAAGT TTATGAAGGTAAAGCAGTTTCTGATGTCATATTTAACAATGTTCGTTGACAGGAGGCTTGCAGATTTTACATGATAGAAA GTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAATTCTCCGAAT TTGAATCGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAGTATGTGAAACCTT GTGAATATTGTAAAGTTTATTTACTAATCTACATTGCTACCACAATTTACCTAATCTTTAAACTTCACCTACAAATGTTA TTGGTAAGGTGTTTACAGAACCATAGATGATAATATCTGACTTTTGATATTTTCAGAATGTCTTGGGGAAATGGAGTTCA AAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGGGCAGTATGTCATGCA GGTAGACTGTTTTATGGAATTTTTTCAGCATATTTTCTTCAAAAAATAATCATAAAATAAGTTTGTATCTTTACCAGAAA GTAGAAAGAAACCACTGTTGAATCTTACCAAAAAACAATAATGATCAGTCACAGTATTTTTTTTATGTACATATCATTTT GTAATTTGAGTTCTTTATTAAAACAAAGCTAAGGGAGCATCAGTCATAATACATTAGTTTCTCAAAATAAATTTTGAATT CCTTCATGAACCATGATGTTTGGTATTTTTCTGTTCAATAAACTTGTCTTCCTTTAACTTTATGAGGTCTAATAGTGCAA CATGTTCTAGTGGGCTTTAGGATTAACAATTTATCCTAAGAGGAGTGCTAGCAACACTCTCTTTGACACCCTCGTTTCAA CACATTCTCTTTTATTAGTTGAAGTTCTTATGGATCCCATCAAATAAGGAGTGGGTACCCATATAACTTATGGATCCCAC ATGGATTTCAACCAAGAGTGTGTTGGAAAGAGAGTGTTGCTAGCATTTCTCTTTATCCTTAGTTTTTGTGATTCACTTAC ATAGTAACTTCTTTGAAACATTGGTAATCTCTTACTGTTTCTAATTTTTTTTCTGATGAATTTTTCTTCTTTTAGGGATT TCTTGATTTACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCAC TCATTGGTGGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGGTAGGTTTCTTTGCCATTAAATTTTCTCTATCT TTCTAGTTGTAAAATATCTTCTAATGTTTTTCATTTCGGAATACCCTCGTATTTAATTCAATATGCTGTTTAATTGTAAT GCTATAATATCATGGAAATTTCTCTGATATTTGTAAGTTGTAACTCAACCGTGTTGTGGTCACAACTACACATAACTGCA ATTAGCTTCATGCGAGTTCAAGTAGGGCCACTCATGAGGTTATATAAAGTTCAACATTATGTATACATGGCATCATCTTA TGATTCATGGTGTTTGTGTATGCGTACATTTTTGTTTACAACAGAATTGTTCTCTGCTATAGCTTGTGCTGAAGCCCTTC TTTGTCTGCTGAACAGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGTAGCAAAA CTAAGATGGGGGCACATGTTAACTCAACTGCGGTAAGTCTTTTGTTATCCTGAATTTTGTAGTTCTACATTGCAAGTGAG TAAATTGGTTAGACTTGACAAAATCATTCAAGGTTTGGAATCAGTGTGAGCTATTGCTGTTAAAAGCTGCAATATAGACG CATACACTATTTACCAAAATTTGATTGAGACACTCAGTTTTCCTTTTTGTTTTACCTGCACTTCCGTTGGTCATTATTCT TGAAATTAATGAGTTGGAGAACTTGTTGCTTCATGCACCAAAGTTACAGGCTCAGATCCTCACTAGTGACATAAGCATTG GAGAGAGACCTTGACTAAACCTTCCGAAATATATTTTTTACTTTTCTTTCAATATAATTTTGGACGGTCCGAATTTCTCT CCAGGCATTATATCACTGTCGAGAATGCAGTCTCCAAAAGTTACTATGTTTCAGAAATAAAGATCAATGCTTTACATCAT GTCTGAGGTGATAATTACTTCACATTTTTTATTGCAGCTTTCCGCGGTTACTTGGATAATTGGCTCCCTCATTATGGCCA TTAATATATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTAAGGTATTTCTT GGGATGTTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAACAAAGAGTCCAC ACACCTTCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAA GAGAAGACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGACAAATATGCCAATGATAAGGT AGGTAGATTGGCAAGATAGACCTGGAAAATAAATAAACCTCAGTCCTAATTTCTAGAATCAGAAATGTTGGATTAGTATT AGAACATCTTCTGGTGTCACTTGGTTAGAATATCTAAGTTCTTGAGTTTCATGTGATGCCTATATATCTTCAAGGACTTC TTGAGGTTGGGAAATTTTGCTTACTTTCTATCCTTTCTTCCACAATCTTCTCAATTGAAACATACAAAATTTATAATTTC TTGTTAGAAGAAAAAGTACTACTCTTTTTGCAGATGTATTGTTTTGAAACTTCTTACCAGTTTCTCCTACTAATCCTCCT ATTACTGAATGAGACAAATATTTATGTAAGGTTTTTTTGGAGGGAGGGGGTGTTAAGCAATACCAAGTGGTAGAACAAGG ACATCTATAATCCAAATAAACAGAACTTGGTATACACAAAACAAGACAGA
CDS sequence (LotjaGi3g1v0004400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGGAGATAGTGAAAGTACAAATCAGTTCAGTTCCGAAACAAACACTCACAAAATCAGAAAAGAGAAGACAGAGTG GGTCTCACTCACTGTGTTCGTGTTACGGCACCGCAGTACTGTCTTCATTCTTTGTTTGGAAGGAAAAAAAGAGAACATGG CTGTCACAGGTTCTGCTAATGGGCAGCCACAATTCATTTCCAGCTCTGGAAACCGAAGCCTTTCCAATGCGCCACTCATT GAGAACTCAGATACTCATCAAATTGTTGTGCCTGATAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTT TCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGTTAC TTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTATTCAAACAATGGCAGCCAATCTCGGGGTGGTCACAGGAAAG CACTTGGCAGAGCATTGTAGAACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGT GGCCTGTGACATTCCTGAAGTCATTGGGACCGCCTTCGCACTGAATATGCTCTTTAACATACCTGTTTGGATTGGTGTTC TTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTT CTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATGCTAAAGAAGTTGTGAGGGGTCT TTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATC TCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTAC ATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAA TTCTCCGAATTTGAATCGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAAATG TCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATAT GCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGC CATTGTTCCTAGTTTGGTTGTTGCACTCATTGGTGGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGATGATCT TATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGTAGCAAAACTAAGATGGGGGCACATGTTAAC TCAACTGCGCTTTCCGCGGTTACTTGGATAATTGGCTCCCTCATTATGGCCATTAATATATACTATTTAATTACTGGCTT CATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTAAGGTATTTCTTGGGATGTTAGGATTTTCAGGTATTGCAG TATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAACAAAGAGTCCACACACCTTCTGGCTCTAACAGCACCAGAA AGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAAGAGAAGACATAGTGAGCATGCAGTTGCC TCAAAGAAGTGGTCCTGCAGATCTTGACTGA
Protein sequence (LotjaGi3g1v0004400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGDSESTNQFSSETNTHKIRKEKTEWVSLTVFVLRHRSTVFILCLEGKKENMAVTGSANGQPQFISSSGNRSLSNAPLI ENSDTHQIVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVIQTMAANLGVVTGK HLAEHCRTEYARVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAF LVFTIAGCFMAELGYAKPDAKEVVRGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFY MIESAFALMVAFLINVCVISVSGAICNSPNLNREDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTY AGQYVMQGFLDLRLKPWLRNMLTRSLAIVPSLVVALIGGSSGAGELIIIASMILSFELPFALVPLLKFTSSKTKMGAHVN STALSAVTWIIGSLIMAINIYYLITGFIKLLLHSHMKIVAKVFLGMLGFSGIAVYLAGIAYLVLRKNKESTHLLALTAPE SQQMTNEQGNGSIYSLPREDIVSMQLPQRSGPADLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 95 | 95 | - | – | |
| PANTHER | 65 | 591 | 527 | 1.5E-301 | – | |
| PANTHER | 65 | 591 | 527 | 1.5E-301 | ||
| Hamap | 91 | 507 | 417 | 39.437 | ||
| TMHMM | 95 | 114 | 20 | - | – | |
| Phobius | 96 | 114 | 19 | - | – | |
| TIGRFAM | 98 | 475 | 378 | 2.6E-124 | ||
| Phobius | 115 | 133 | 19 | - | – | |
| Pfam | 119 | 481 | 363 | 4.8E-123 | ||
| TMHMM | 134 | 156 | 23 | - | – | |
| Phobius | 134 | 156 | 23 | - | – | |
| Phobius | 157 | 175 | 19 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| Phobius | 176 | 201 | 26 | - | – | |
| PRINTS | 178 | 204 | 27 | 5.1E-66 | ||
| Phobius | 202 | 206 | 5 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| PRINTS | 206 | 225 | 20 | 5.1E-66 | ||
| Phobius | 207 | 226 | 20 | - | – | |
| Phobius | 227 | 237 | 11 | - | – | |
| PRINTS | 231 | 252 | 22 | 5.1E-66 | ||
| TMHMM | 234 | 256 | 23 | - | – | |
| Phobius | 238 | 256 | 19 | - | – | |
| Phobius | 257 | 275 | 19 | - | – | |
| Phobius | 276 | 303 | 28 | - | – | |
| PRINTS | 281 | 304 | 24 | 5.1E-66 | ||
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 304 | 323 | 20 | - | – | |
| TMHMM | 324 | 346 | 23 | - | – | |
| Phobius | 324 | 345 | 22 | - | – | |
| Phobius | 346 | 381 | 36 | - | – | |
| Phobius | 382 | 401 | 20 | - | – | |
| TMHMM | 382 | 404 | 23 | - | – | |
| PRINTS | 391 | 410 | 20 | 5.1E-66 | ||
| Phobius | 402 | 421 | 20 | - | – | |
| TMHMM | 417 | 439 | 23 | - | – | |
| PRINTS | 419 | 436 | 18 | 5.1E-66 | ||
| Phobius | 422 | 440 | 19 | - | – | |
| Phobius | 441 | 445 | 5 | - | – | |
| TMHMM | 443 | 465 | 23 | - | – | |
| Phobius | 446 | 466 | 21 | - | – | |
| PRINTS | 451 | 470 | 20 | 5.1E-66 | ||
| Phobius | 467 | 486 | 20 | - | – | |
| TMHMM | 485 | 507 | 23 | - | – | |
| Phobius | 487 | 512 | 26 | - | – | |
| Phobius | 513 | 517 | 5 | - | – | |
| Phobius | 518 | 544 | 27 | - | – | |
| TMHMM | 522 | 544 | 23 | - | – | |
| Phobius | 545 | 596 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0004400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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