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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004400 |
| Transcript ID | LotjaGi3g1v0004400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter, putative; TAIR: AT1G15960.1 NRAMP metal ion transporter 6; Swiss-Prot: sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6; TrEMBL-Plants: tr|A0A151S6L4|A0A151S6L4_CAJCA Metal transporter Nramp6; Found in the gene: LotjaGi3g1v0004400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:582024..588817) extracted from Lotus japonicus Gifu genome v1.2.
GTCTAAAATATTTACTATAAATGCAGGGAGATAGTGAAAGTACAAATCAGTTCAGTTCCGAAACAAACACTCACAAAATC AGAAAAGAGAAGACAGAGTGGGTCTCACTCACTGTGTTCGTGTTACGGCACCGCAGTACTGTCTTCATTCTTTGTTTGGT ATGCAATGCAATTCAATCTTCTCTTCCATTTCAGTGTTGTCATTTTCATTTTCCTTGTGTTGCTCTCTGTTCCCTACAAA TCTAATCAAACCCTCCCTATTCTGTCTTTGATCGATGCTTTCAGCTAATTATATTAGAACAAGTGATGCTTAAATTTCAA CATTTGAAATTAGACACTGCATGTTGCTCTTAATAATATTGATCTTAATCAGAAATATTAATTTTTTATTCAAATCTAGA ATTGGGTTTTGCTTACTTGATCCTGAAATGTCAATATTCCATTTGTATTCATTTTACTGGTGCAGATACTGAGTTGTTTT AGACACACAAGTTGCTGTTCATCATTTTGATCTTAATTGGAAAGATTACTTTTTTACACGAATCTAGAATTGGCTTTTGC TTAACTCTGTTTTTCTGGCTTATTCCTTGGCTCTGAAGATTCGTTTTGGTTGGAATTGGATCCCAGTTGCATGAAAGATT TGTTTTGGCTGCAGGAAGGAAAAAAAGAGAACATGGCTGTCACAGGTTCTGCTAATGGGCAGCCACAATTCATTTCCAGC TCTGGAAACCGAAGCCTTTCCAATGCGCCACTCATTGAGAACTCAGATACTCATCAAATTGTTGTGCCTGATGTAAGTTT GGGATGTCAATCAAATTGCTACCTATGTTTAAGATTAAAGATTCATTGTATCGAATATCTTATATACTTTGTTTGAATCT GAATTTCATGATATGGGAATGGAATTTATTTATAAACAACAAACAAAATGCTTCCATGATCACTTCTTCCTCCGACCAGT TAAATTTTGAAAATATTATAACACATAAAATATTAACCGAACATTTTGAATTTAGGTAGAATAGAAATAGCACACTTAGA TATAGTATTCTTTGGAATATCATTCCCAGAAATGCAGTTGAAAATCTTGACACAAATGCCTTCTAAGGAATGTTCCAGAA TTTTTTTTTCTATTCCCATGTCATGTAAGAGTAGGGAATAAGAGGTTGTTCAAGCCTGACTGATTTATTTGAATCTCAAG TTCAACATGTTTCCAATTAAATCAAGGTTCGAGGACGAACCTTCTATAAGGAGAGAATGTGATAAGAACTGGCTAAGAAA GAAAGAAATGGAAGAAGAAATGAATGAAAGGGTCCACACCAATGCAGGGTGTTATATGTCAAGACTCAAGAATTGCATCT CTGGTAACGGTTAAGCTTTTGGAAATGAGATGAACAAGAACGCTTACCATCTTGCCAAAATCTTATGCTGGCAAAGGCGC AATTCTTGACATATAATGCATAAAATGCAGGTCATTCCCTATTATGTATGGGCCACTGAGTTGAACCCAATCGACAAACC CAACATGCATCCTCCCGACCATTTGGGCATATCACTGTTGATAGTTAATGTGTAGTCATCATGTGTGCTATTTGCTCAGC AAATCTCCAATTAAATTGATTTCACTCATGCATGAAATGGAATCTGAGTGCTTTGATTATAGTTATAGAGTACACTGCAG TAATGCTAATGCATATACTGTCTAATGTGAAGTTTGGTTTATTTGATAACCACCATTTATGTATGTTTTTTTATTTTGTA GAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACT GTAAGATCACACTATTCATGATTTTCTTCCTTAAGAAAAGGAAACATATTCCTGATATAGTATGCTTATGGTGTTCTTAT ATTTACTTGCAGTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGGTACTAAGATGTGTCCTATAGTACCTA AGTGTGCTCAAGATTTCTTTTATGAACAAAACTTATATACAGTTCCATACATGCTGTTTATACTGTTGTCTACTTACAAC ATGATACGTGGGTTAAAAAATGGGAAGTTGAGTGAAGTTTTTCATTAATAGGATATTAGGTAAGTTTTGTCTCTTCTTTT ATTTCTTAATAACCTTTTCTTTTTTTTCCCAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTATTCAA ACAATGGCAGCCAATCTCGGGGTGGTCACAGGTACTTGATTTGATAACTTTATTTTGACTGAAAATTTCGTGTGTATCCG AGTGGTAAGCCTTCATTTTTGTTCCTGATTCTTTCAATTCTATTTGCTGTTTGCAGGAAAGCACTTGGCAGAGCATTGTA GAACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAA GGTATAGAGATGAATTCAATATTTTGAATTGTTTCAAATTATTTATATTTATTAATTGTGTAAATATTATAAAACATTTT CTTCTGGGGATTTGTTTGTCTTCTTAGGATGTTGAATAGAGTTTACTGATTTAAACATATCTCCCAACCAAGGTATTGAA TAGATTCAAATATTCAATACATAACTCAATCAAGTGATTGTTAAGCTCTATGGTTTAAAGAAGTGATGCCTTTTCACCTT CATGTTGTTTTTCTCCACTCATTTTACTACATGTTAATGAAAATAAAAAGAACTTCGTGTCAGGGTTACTAGAAATCCTA CTAAAGAACTACAGTGTAAGTCAGATGGGAAGATTATCAAATTTTAAACACAAGCCATAATTTTTCATTTATTCTCTTCT CAACTTCTATTTATCTCGAAATTTATTGGACATATGCAGTCATTGGGACCGCCTTCGCACTGAATATGCTCTTTAACATA CCTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTAGTTTGCTG TATTTCATTCTATGGTTTCATGTTATGAAGAGAAGTTTTGCACCGTGAACAAATTTATGGTTGTCAATGCATGTTATGTT AGTACTATATATAAAAATACATCATGAGCCTTTTCCTATTGTTGTTGAACAGGTTAGGAAACTTGAATTCTTGATTGCAT TTCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATGCTAAAGAAGTTGTGAGGGGT CTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGTGGGT TCATGTCTTCTAAAGCCATTTTAATTTTGTTTCCATTTAGAATGTATTCTCATGCTATGCTTCTTTATACATTTCCCCTC AGGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTTCGTGGAATCAAAGTAAACAT TTAAACTTTTGCATGCATGTTTATTTGTTTTTATTTATTTATTCAAGGTTTATCTCTGATCCAATTAATGTCTAAAGGTT GTTGGCCTATGGATACTTGAACTCTTCCCATTCACATCTGTTCTTTAAGAATGTGGTTGTAGACTATGACCTTAAATTTA TCAAAAACAATGCTTCTCTTTGATAAATAAAGTATCCTAAAGCAGGAAAGGTTATTGAAATTTGAATTATTGTTGGAAGG TCCTGTTAAGTTTTTAATTTTGTGAACGTTCAGATAAAATGATCCAACTTAAAGCCAAGTCGTAAGCGTGTAAGTTTATG AAGGTAAAGCAGTTTCTGATGTCATATTTAACAATGTTCGTTGACAGGAGGCTTGCAGATTTTACATGATAGAAAGTGCC TTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAATTCTCCGAATTTGAA TCGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAGTATGTGAAACCTTGTGAA TATTGTAAAGTTTATTTACTAATCTACATTGCTACCACAATTTACCTAATCTTTAAACTTCACCTACAAATGTTATTGGT AAGGTGTTTACAGAACCATAGATGATAATATCTGACTTTTGATATTTTCAGAATGTCTTGGGGAAATGGAGTTCAAAACT GTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGGGCAGTATGTCATGCAGGTAG ACTGTTTTATGGAATTTTTTCAGCATATTTTCTTCAAAAAATAATCATAAAATAAGTTTGTATCTTTACCAGAAAGTAGA AAGAAACCACTGTTGAATCTTACCAAAAAACAATAATGATCAGTCACAGTATTTTTTTTATGTACATATCATTTTGTAAT TTGAGTTCTTTATTAAAACAAAGCTAAGGGAGCATCAGTCATAATACATTAGTTTCTCAAAATAAATTTTGAATTCCTTC ATGAACCATGATGTTTGGTATTTTTCTGTTCAATAAACTTGTCTTCCTTTAACTTTATGAGGTCTAATAGTGCAACATGT TCTAGTGGGCTTTAGGATTAACAATTTATCCTAAGAGGAGTGCTAGCAACACTCTCTTTGACACCCTCGTTTCAACACAT TCTCTTTTATTAGTTGAAGTTCTTATGGATCCCATCAAATAAGGAGTGGGTACCCATATAACTTATGGATCCCACATGGA TTTCAACCAAGAGTGTGTTGGAAAGAGAGTGTTGCTAGCATTTCTCTTTATCCTTAGTTTTTGTGATTCACTTACATAGT AACTTCTTTGAAACATTGGTAATCTCTTACTGTTTCTAATTTTTTTTCTGATGAATTTTTCTTCTTTTAGGGATTTCTTG ATTTACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCACTCATT GGTGGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGGTAGGTTTCTTTGCCATTAAATTTTCTCTATCTTTCTA GTTGTAAAATATCTTCTAATGTTTTTCATTTCGGAATACCCTCGTATTTAATTCAATATGCTGTTTAATTGTAATGCTAT AATATCATGGAAATTTCTCTGATATTTGTAAGTTGTAACTCAACCGTGTTGTGGTCACAACTACACATAACTGCAATTAG CTTCATGCGAGTTCAAGTAGGGCCACTCATGAGGTTATATAAAGTTCAACATTATGTATACATGGCATCATCTTATGATT CATGGTGTTTGTGTATGCGTACATTTTTGTTTACAACAGAATTGTTCTCTGCTATAGCTTGTGCTGAAGCCCTTCTTTGT CTGCTGAACAGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGTAGCAAAACTAAG ATGGGGGCACATGTTAACTCAACTGCGGTAAGTCTTTTGTTATCCTGAATTTTGTAGTTCTACATTGCAAGTGAGTAAAT TGGTTAGACTTGACAAAATCATTCAAGGTTTGGAATCAGTGTGAGCTATTGCTGTTAAAAGCTGCAATATAGACGCATAC ACTATTTACCAAAATTTGATTGAGACACTCAGTTTTCCTTTTTGTTTTACCTGCACTTCCGTTGGTCATTATTCTTGAAA TTAATGAGTTGGAGAACTTGTTGCTTCATGCACCAAAGTTACAGGCTCAGATCCTCACTAGTGACATAAGCATTGGAGAG AGACCTTGACTAAACCTTCCGAAATATATTTTTTACTTTTCTTTCAATATAATTTTGGACGGTCCGAATTTCTCTCCAGG CATTATATCACTGTCGAGAATGCAGTCTCCAAAAGTTACTATGTTTCAGAAATAAAGATCAATGCTTTACATCATGTCTG AGGTGATAATTACTTCACATTTTTTATTGCAGCTTTCCGCGGTTACTTGGATAATTGGCTCCCTCATTATGGCCATTAAT ATATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTAAGGTATTTCTTGGGAT GTTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAACAAAGAGTCCACACACC TTCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAAGAGAA GACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGACAAATATGCCAATGATAAGGTAGGTA GATTGGCAAGATAGACCTGGAAAATAAATAAACCTCAGTCCTAATTTCTAGAATCAGAAATGTTGGATTAGTATTAGAAC ATCTTCTGGTGTCACTTGGTTAGAATATCTAAGTTCTTGAGTTTCATGTGATGCCTATATATCTTCAAGGACTTCTTGAG GTTGGGAAATTTTGCTTACTTTCTATCCTTTCTTCCACAATCTTCTCAATTGAAACATACAAAATTTATAATTTCTTGTT AGAAGAAAAAGTACTACTCTTTTTGCAGATGTATTGTTTTGAAACTTCTTACCAGTTTCTCCTACTAATCCTCCTATTAC TGAATGAGACAAATATTTATGTAAGGTTTTTTTGGAGGGAGGGGGTGTTAAGCAATACCAAGTGGTAGAACAAG
CDS sequence (LotjaGi3g1v0004400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGATTTGTTTTGGCTGCAGGAAGGAAAAAAAGAGAACATGGCTGTCACAGGTTCTGCTAATGGGCAGCCACAATT CATTTCCAGCTCTGGAAACCGAAGCCTTTCCAATGCGCCACTCATTGAGAACTCAGATACTCATCAAATTGTTGTGCCTG ATAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAAC TTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCT TGTTATTCAAACAATGGCAGCCAATCTCGGGGTGGTCACAGGAAAGCACTTGGCAGAGCATTGTAGAACTGAATATGCTC GGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTCATTGGGACCGCC TTCGCACTGAATATGCTCTTTAACATACCTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGC ATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGGATGTTTCATGGCTG AGCTTGGATATGCAAAGCCGGATGCTAAAGAAGTTGTGAGGGGTCTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACT GGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAA AATACCACGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCT TCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAATTCTCCGAATTTGAATCGAGAAGATCAGATGAGC TGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAAT TGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATT TACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCACTCATTGGT GGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACT CCTCAAGTTTACAAGTAGCAAAACTAAGATGGGGGCACATGTTAACTCAACTGCGCTTTCCGCGGTTACTTGGATAATTG GCTCCCTCATTATGGCCATTAATATATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATT GTGGCTAAGGTATTTCTTGGGATGTTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCG CAAAAACAAAGAGTCCACACACCTTCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGAT CAATCTATTCTCTTCCAAGAGAAGACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGA
Protein sequence (LotjaGi3g1v0004400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDLFWLQEGKKENMAVTGSANGQPQFISSSGNRSLSNAPLIENSDTHQIVVPDRRSWKNLFAYMGPGFLVSIAYIDPGN FETDLQAGAQYKYELLWIILVASCAALVIQTMAANLGVVTGKHLAEHCRTEYARVPNFILWVIAEIAIVACDIPEVIGTA FALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAGCFMAELGYAKPDAKEVVRGLFVPQLKGNGAT GLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVCVISVSGAICNSPNLNREDQMS CQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNMLTRSLAIVPSLVVALIG GSSGAGELIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTALSAVTWIIGSLIMAINIYYLITGFIKLLLHSHMKI VAKVFLGMLGFSGIAVYLAGIAYLVLRKNKESTHLLALTAPESQQMTNEQGNGSIYSLPREDIVSMQLPQRSGPADLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 57 | 57 | - | – | |
| PANTHER | 27 | 553 | 527 | 1.2E-301 | ||
| PANTHER | 27 | 553 | 527 | 1.2E-301 | – | |
| Hamap | 53 | 469 | 417 | 39.437 | ||
| TMHMM | 57 | 76 | 20 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| TIGRFAM | 60 | 437 | 378 | 2.2E-124 | ||
| Phobius | 77 | 95 | 19 | - | – | |
| Pfam | 81 | 443 | 363 | 2.4E-123 | ||
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 96 | 118 | 23 | - | – | |
| Phobius | 119 | 137 | 19 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 138 | 163 | 26 | - | – | |
| PRINTS | 140 | 166 | 27 | 3.4E-66 | ||
| Phobius | 164 | 168 | 5 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| PRINTS | 168 | 187 | 20 | 3.4E-66 | ||
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 199 | 11 | - | – | |
| PRINTS | 193 | 214 | 22 | 3.4E-66 | ||
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 200 | 218 | 19 | - | – | |
| Phobius | 219 | 237 | 19 | - | – | |
| Phobius | 238 | 265 | 28 | - | – | |
| TMHMM | 243 | 265 | 23 | - | – | |
| PRINTS | 243 | 266 | 24 | 3.4E-66 | ||
| Phobius | 266 | 285 | 20 | - | – | |
| Phobius | 286 | 307 | 22 | - | – | |
| TMHMM | 286 | 308 | 23 | - | – | |
| Phobius | 308 | 343 | 36 | - | – | |
| TMHMM | 344 | 366 | 23 | - | – | |
| Phobius | 344 | 363 | 20 | - | – | |
| PRINTS | 353 | 372 | 20 | 3.4E-66 | ||
| Phobius | 364 | 383 | 20 | - | – | |
| TMHMM | 379 | 401 | 23 | - | – | |
| PRINTS | 381 | 398 | 18 | 3.4E-66 | ||
| Phobius | 384 | 402 | 19 | - | – | |
| Phobius | 403 | 407 | 5 | - | – | |
| TMHMM | 405 | 427 | 23 | - | – | |
| Phobius | 408 | 428 | 21 | - | – | |
| PRINTS | 413 | 432 | 20 | 3.4E-66 | ||
| Phobius | 429 | 448 | 20 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 449 | 474 | 26 | - | – | |
| Phobius | 475 | 479 | 5 | - | – | |
| Phobius | 480 | 506 | 27 | - | – | |
| TMHMM | 484 | 506 | 23 | - | – | |
| Phobius | 507 | 558 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0004400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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