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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004400 |
| Transcript ID | LotjaGi3g1v0004400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter, putative; TAIR: AT1G15960.1 NRAMP metal ion transporter 6; Swiss-Prot: sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6; TrEMBL-Plants: tr|A0A151S6L4|A0A151S6L4_CAJCA Metal transporter Nramp6; Found in the gene: LotjaGi3g1v0004400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:583604..588397) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGTGCTATTTGCTCAGCAAATCTCCAATTAAATTGATTTCACTCATGCATGAAATGGAATCTGAGTGCTTTGATTAT AGTTATAGAGTACACTGCAGTAATGCTAATGCATATACTGTCTAATGTGAAGTTTGGTTTATTTGATAACCACCATTTAT GTATGTTTTTTTATTTTGTAGAGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGC ATATATAGACCCAGGAAACTGTAAGATCACACTATTCATGATTTTCTTCCTTAAGAAAAGGAAACATATTCCTGATATAG TATGCTTATGGTGTTCTTATATTTACTTGCAGTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGGTACTAA GATGTGTCCTATAGTACCTAAGTGTGCTCAAGATTTCTTTTATGAACAAAACTTATATACAGTTCCATACATGCTGTTTA TACTGTTGTCTACTTACAACATGATACGTGGGTTAAAAAATGGGAAGTTGAGTGAAGTTTTTCATTAATAGGATATTAGG TAAGTTTTGTCTCTTCTTTTATTTCTTAATAACCTTTTCTTTTTTTTCCCAGTTACTTTGGATCATACTGGTCGCGTCAT GTGCTGCTCTTGTTATTCAAACAATGGCAGCCAATCTCGGGGTGGTCACAGGTACTTGATTTGATAACTTTATTTTGACT GAAAATTTCGTGTGTATCCGAGTGGTAAGCCTTCATTTTTGTTCCTGATTCTTTCAATTCTATTTGCTGTTTGCAGGAAA GCACTTGGCAGAGCATTGTAGAACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAG TGGCCTGTGACATTCCTGAAGGTATAGAGATGAATTCAATATTTTGAATTGTTTCAAATTATTTATATTTATTAATTGTG TAAATATTATAAAACATTTTCTTCTGGGGATTTGTTTGTCTTCTTAGGATGTTGAATAGAGTTTACTGATTTAAACATAT CTCCCAACCAAGGTATTGAATAGATTCAAATATTCAATACATAACTCAATCAAGTGATTGTTAAGCTCTATGGTTTAAAG AAGTGATGCCTTTTCACCTTCATGTTGTTTTTCTCCACTCATTTTACTACATGTTAATGAAAATAAAAAGAACTTCGTGT CAGGGTTACTAGAAATCCTACTAAAGAACTACAGTGTAAGTCAGATGGGAAGATTATCAAATTTTAAACACAAGCCATAA TTTTTCATTTATTCTCTTCTCAACTTCTATTTATCTCGAAATTTATTGGACATATGCAGTCATTGGGACCGCCTTCGCAC TGAATATGCTCTTTAACATACCTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAG CAATATGGGGTAGTTTGCTGTATTTCATTCTATGGTTTCATGTTATGAAGAGAAGTTTTGCACCGTGAACAAATTTATGG TTGTCAATGCATGTTATGTTAGTACTATATATAAAAATACATCATGAGCCTTTTCCTATTGTTGTTGAACAGGTTAGGAA ACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATG CTAAAGAAGTTGTGAGGGGTCTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGG GCTATGGTTATGCCGTGGGTTCATGTCTTCTAAAGCCATTTTAATTTTGTTTCCATTTAGAATGTATTCTCATGCTATGC TTCTTTATACATTTCCCCTCAGGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTT CGTGGAATCAAAGTAAACATTTAAACTTTTGCATGCATGTTTATTTGTTTTTATTTATTTATTCAAGGTTTATCTCTGAT CCAATTAATGTCTAAAGGTTGTTGGCCTATGGATACTTGAACTCTTCCCATTCACATCTGTTCTTTAAGAATGTGGTTGT AGACTATGACCTTAAATTTATCAAAAACAATGCTTCTCTTTGATAAATAAAGTATCCTAAAGCAGGAAAGGTTATTGAAA TTTGAATTATTGTTGGAAGGTCCTGTTAAGTTTTTAATTTTGTGAACGTTCAGATAAAATGATCCAACTTAAAGCCAAGT CGTAAGCGTGTAAGTTTATGAAGGTAAAGCAGTTTCTGATGTCATATTTAACAATGTTCGTTGACAGGAGGCTTGCAGAT TTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATT TGTAATTCTCCGAATTTGAATCGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAG AGTATGTGAAACCTTGTGAATATTGTAAAGTTTATTTACTAATCTACATTGCTACCACAATTTACCTAATCTTTAAACTT CACCTACAAATGTTATTGGTAAGGTGTTTACAGAACCATAGATGATAATATCTGACTTTTGATATTTTCAGAATGTCTTG GGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGG GCAGTATGTCATGCAGGTAGACTGTTTTATGGAATTTTTTCAGCATATTTTCTTCAAAAAATAATCATAAAATAAGTTTG TATCTTTACCAGAAAGTAGAAAGAAACCACTGTTGAATCTTACCAAAAAACAATAATGATCAGTCACAGTATTTTTTTTA TGTACATATCATTTTGTAATTTGAGTTCTTTATTAAAACAAAGCTAAGGGAGCATCAGTCATAATACATTAGTTTCTCAA AATAAATTTTGAATTCCTTCATGAACCATGATGTTTGGTATTTTTCTGTTCAATAAACTTGTCTTCCTTTAACTTTATGA GGTCTAATAGTGCAACATGTTCTAGTGGGCTTTAGGATTAACAATTTATCCTAAGAGGAGTGCTAGCAACACTCTCTTTG ACACCCTCGTTTCAACACATTCTCTTTTATTAGTTGAAGTTCTTATGGATCCCATCAAATAAGGAGTGGGTACCCATATA ACTTATGGATCCCACATGGATTTCAACCAAGAGTGTGTTGGAAAGAGAGTGTTGCTAGCATTTCTCTTTATCCTTAGTTT TTGTGATTCACTTACATAGTAACTTCTTTGAAACATTGGTAATCTCTTACTGTTTCTAATTTTTTTTCTGATGAATTTTT CTTCTTTTAGGGATTTCTTGATTTACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTA GTTTGGTTGTTGCACTCATTGGTGGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGGTAGGTTTCTTTGCCATT AAATTTTCTCTATCTTTCTAGTTGTAAAATATCTTCTAATGTTTTTCATTTCGGAATACCCTCGTATTTAATTCAATATG CTGTTTAATTGTAATGCTATAATATCATGGAAATTTCTCTGATATTTGTAAGTTGTAACTCAACCGTGTTGTGGTCACAA CTACACATAACTGCAATTAGCTTCATGCGAGTTCAAGTAGGGCCACTCATGAGGTTATATAAAGTTCAACATTATGTATA CATGGCATCATCTTATGATTCATGGTGTTTGTGTATGCGTACATTTTTGTTTACAACAGAATTGTTCTCTGCTATAGCTT GTGCTGAAGCCCTTCTTTGTCTGCTGAACAGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGT TTACAAGTAGCAAAACTAAGATGGGGGCACATGTTAACTCAACTGCGGTAAGTCTTTTGTTATCCTGAATTTTGTAGTTC TACATTGCAAGTGAGTAAATTGGTTAGACTTGACAAAATCATTCAAGGTTTGGAATCAGTGTGAGCTATTGCTGTTAAAA GCTGCAATATAGACGCATACACTATTTACCAAAATTTGATTGAGACACTCAGTTTTCCTTTTTGTTTTACCTGCACTTCC GTTGGTCATTATTCTTGAAATTAATGAGTTGGAGAACTTGTTGCTTCATGCACCAAAGTTACAGGCTCAGATCCTCACTA GTGACATAAGCATTGGAGAGAGACCTTGACTAAACCTTCCGAAATATATTTTTTACTTTTCTTTCAATATAATTTTGGAC GGTCCGAATTTCTCTCCAGGCATTATATCACTGTCGAGAATGCAGTCTCCAAAAGTTACTATGTTTCAGAAATAAAGATC AATGCTTTACATCATGTCTGAGGTGATAATTACTTCACATTTTTTATTGCAGCTTTCCGCGGTTACTTGGATAATTGGCT CCCTCATTATGGCCATTAATATATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTG GCTAAGGTATTTCTTGGGATGTTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAA AAACAAAGAGTCCACACACCTTCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAA TCTATTCTCTTCCAAGAGAAGACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGA
CDS sequence (LotjaGi3g1v0004400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATGGAATCTGAGTGCTTTGATTATAGTTATAGAGTACACTGCAGTAATGCTAATGCATATACTGTCTAATAGGAG AAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGA CTGATCTTCAGGCTGGGGCACAATATAAATATGAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTATT CAAACAATGGCAGCCAATCTCGGGGTGGTCACAGGAAAGCACTTGGCAGAGCATTGTAGAACTGAATATGCTCGGGTGCC CAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTCATTGGGACCGCCTTCGCAC TGAATATGCTCTTTAACATACCTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAG CAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGG ATATGCAAAGCCGGATGCTAAAGAAGTTGTGAGGGGTCTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTG CAATTTCACTCCTCGGGGCTATGGTTATGCCGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCA CGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCAT AAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAATTCTCCGAATTTGAATCGAGAAGATCAGATGAGCTGTCAGG ATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTG CTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGTCT GAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCACTCATTGGTGGCTCTT CAGGGGCTGGGGAGCTCATCATAATTGCATCGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAG TTTACAAGTAGCAAAACTAAGATGGGGGCACATGTTAACTCAACTGCGCTTTCCGCGGTTACTTGGATAATTGGCTCCCT CATTATGGCCATTAATATATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTA AGGTATTTCTTGGGATGTTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAAC AAAGAGTCCACACACCTTCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTA TTCTCTTCCAAGAGAAGACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGA
Protein sequence (LotjaGi3g1v0004400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWNLSALIIVIEYTAVMLMHILSNRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVI QTMAANLGVVTGKHLAEHCRTEYARVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQ QYGVRKLEFLIAFLVFTIAGCFMAELGYAKPDAKEVVRGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIP RSVRGIKEACRFYMIESAFALMVAFLINVCVISVSGAICNSPNLNREDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIAL LASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNMLTRSLAIVPSLVVALIGGSSGAGELIIIASMILSFELPFALVPLLK FTSSKTKMGAHVNSTALSAVTWIIGSLIMAINIYYLITGFIKLLLHSHMKIVAKVFLGMLGFSGIAVYLAGIAYLVLRKN KESTHLLALTAPESQQMTNEQGNGSIYSLPREDIVSMQLPQRSGPADLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| PANTHER | 22 | 524 | 503 | 4.3E-294 | ||
| PANTHER | 22 | 524 | 503 | 4.3E-294 | – | |
| Hamap | 23 | 440 | 418 | 39.38 | ||
| Phobius | 25 | 30 | 6 | - | – | |
| TIGRFAM | 31 | 408 | 378 | 1.8E-124 | ||
| Phobius | 31 | 47 | 17 | - | – | |
| TMHMM | 31 | 48 | 18 | - | – | |
| Phobius | 48 | 66 | 19 | - | – | |
| Pfam | 52 | 414 | 363 | 2.1E-123 | ||
| Phobius | 67 | 89 | 23 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| Phobius | 90 | 108 | 19 | - | – | |
| Phobius | 109 | 134 | 26 | - | – | |
| PRINTS | 111 | 137 | 27 | 2.4E-66 | ||
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 135 | 139 | 5 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| PRINTS | 139 | 158 | 20 | 2.4E-66 | ||
| Phobius | 140 | 159 | 20 | - | – | |
| Phobius | 160 | 170 | 11 | - | – | |
| PRINTS | 164 | 185 | 22 | 2.4E-66 | ||
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 171 | 189 | 19 | - | – | |
| Phobius | 190 | 208 | 19 | - | – | |
| Phobius | 209 | 236 | 28 | - | – | |
| TMHMM | 214 | 236 | 23 | - | – | |
| PRINTS | 214 | 237 | 24 | 2.4E-66 | ||
| Phobius | 237 | 256 | 20 | - | – | |
| Phobius | 257 | 278 | 22 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 279 | 314 | 36 | - | – | |
| Phobius | 315 | 334 | 20 | - | – | |
| TMHMM | 315 | 337 | 23 | - | – | |
| PRINTS | 324 | 343 | 20 | 2.4E-66 | ||
| Phobius | 335 | 354 | 20 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| PRINTS | 352 | 369 | 18 | 2.4E-66 | ||
| Phobius | 355 | 373 | 19 | - | – | |
| Phobius | 374 | 378 | 5 | - | – | |
| TMHMM | 376 | 398 | 23 | - | – | |
| Phobius | 379 | 399 | 21 | - | – | |
| PRINTS | 384 | 403 | 20 | 2.4E-66 | ||
| Phobius | 400 | 419 | 20 | - | – | |
| TMHMM | 418 | 440 | 23 | - | – | |
| Phobius | 420 | 445 | 26 | - | – | |
| Phobius | 446 | 450 | 5 | - | – | |
| Phobius | 451 | 477 | 27 | - | – | |
| TMHMM | 455 | 477 | 23 | - | – | |
| Phobius | 478 | 529 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0004400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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