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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004400 |
| Transcript ID | LotjaGi3g1v0004400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter, putative; TAIR: AT1G15960.1 NRAMP metal ion transporter 6; Swiss-Prot: sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6; TrEMBL-Plants: tr|A0A151S6L4|A0A151S6L4_CAJCA Metal transporter Nramp6; Found in the gene: LotjaGi3g1v0004400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:583785..588397) extracted from Lotus japonicus Gifu genome v1.2.
AGGAGAAGCTGGAAAAATTTATTTGCATACATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTG TAAGATCACACTATTCATGATTTTCTTCCTTAAGAAAAGGAAACATATTCCTGATATAGTATGCTTATGGTGTTCTTATA TTTACTTGCAGTTGAGACTGATCTTCAGGCTGGGGCACAATATAAATATGAGGTACTAAGATGTGTCCTATAGTACCTAA GTGTGCTCAAGATTTCTTTTATGAACAAAACTTATATACAGTTCCATACATGCTGTTTATACTGTTGTCTACTTACAACA TGATACGTGGGTTAAAAAATGGGAAGTTGAGTGAAGTTTTTCATTAATAGGATATTAGGTAAGTTTTGTCTCTTCTTTTA TTTCTTAATAACCTTTTCTTTTTTTTCCCAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTATTCAAA CAATGGCAGCCAATCTCGGGGTGGTCACAGGTACTTGATTTGATAACTTTATTTTGACTGAAAATTTCGTGTGTATCCGA GTGGTAAGCCTTCATTTTTGTTCCTGATTCTTTCAATTCTATTTGCTGTTTGCAGGAAAGCACTTGGCAGAGCATTGTAG AACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCTGAAATTGCCATAGTGGCCTGTGACATTCCTGAAG GTATAGAGATGAATTCAATATTTTGAATTGTTTCAAATTATTTATATTTATTAATTGTGTAAATATTATAAAACATTTTC TTCTGGGGATTTGTTTGTCTTCTTAGGATGTTGAATAGAGTTTACTGATTTAAACATATCTCCCAACCAAGGTATTGAAT AGATTCAAATATTCAATACATAACTCAATCAAGTGATTGTTAAGCTCTATGGTTTAAAGAAGTGATGCCTTTTCACCTTC ATGTTGTTTTTCTCCACTCATTTTACTACATGTTAATGAAAATAAAAAGAACTTCGTGTCAGGGTTACTAGAAATCCTAC TAAAGAACTACAGTGTAAGTCAGATGGGAAGATTATCAAATTTTAAACACAAGCCATAATTTTTCATTTATTCTCTTCTC AACTTCTATTTATCTCGAAATTTATTGGACATATGCAGTCATTGGGACCGCCTTCGCACTGAATATGCTCTTTAACATAC CTGTTTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTAGTTTGCTGT ATTTCATTCTATGGTTTCATGTTATGAAGAGAAGTTTTGCACCGTGAACAAATTTATGGTTGTCAATGCATGTTATGTTA GTACTATATATAAAAATACATCATGAGCCTTTTCCTATTGTTGTTGAACAGGTTAGGAAACTTGAATTCTTGATTGCATT TCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATGCTAAAGAAGTTGTGAGGGGTC TTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGTTATGCCGTGGGTT CATGTCTTCTAAAGCCATTTTAATTTTGTTTCCATTTAGAATGTATTCTCATGCTATGCTTCTTTATACATTTCCCCTCA GGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTTCGTGGAATCAAAGTAAACATT TAAACTTTTGCATGCATGTTTATTTGTTTTTATTTATTTATTCAAGGTTTATCTCTGATCCAATTAATGTCTAAAGGTTG TTGGCCTATGGATACTTGAACTCTTCCCATTCACATCTGTTCTTTAAGAATGTGGTTGTAGACTATGACCTTAAATTTAT CAAAAACAATGCTTCTCTTTGATAAATAAAGTATCCTAAAGCAGGAAAGGTTATTGAAATTTGAATTATTGTTGGAAGGT CCTGTTAAGTTTTTAATTTTGTGAACGTTCAGATAAAATGATCCAACTTAAAGCCAAGTCGTAAGCGTGTAAGTTTATGA AGGTAAAGCAGTTTCTGATGTCATATTTAACAATGTTCGTTGACAGGAGGCTTGCAGATTTTACATGATAGAAAGTGCCT TTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGCGGTGCCATTTGTAATTCTCCGAATTTGAAT CGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTTAGAGTATGTGAAACCTTGTGAAT ATTGTAAAGTTTATTTACTAATCTACATTGCTACCACAATTTACCTAATCTTTAAACTTCACCTACAAATGTTATTGGTA AGGTGTTTACAGAACCATAGATGATAATATCTGACTTTTGATATTTTCAGAATGTCTTGGGGAAATGGAGTTCAAAACTG TTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTATAACAGGGACATATGCAGGGCAGTATGTCATGCAGGTAGA CTGTTTTATGGAATTTTTTCAGCATATTTTCTTCAAAAAATAATCATAAAATAAGTTTGTATCTTTACCAGAAAGTAGAA AGAAACCACTGTTGAATCTTACCAAAAAACAATAATGATCAGTCACAGTATTTTTTTTATGTACATATCATTTTGTAATT TGAGTTCTTTATTAAAACAAAGCTAAGGGAGCATCAGTCATAATACATTAGTTTCTCAAAATAAATTTTGAATTCCTTCA TGAACCATGATGTTTGGTATTTTTCTGTTCAATAAACTTGTCTTCCTTTAACTTTATGAGGTCTAATAGTGCAACATGTT CTAGTGGGCTTTAGGATTAACAATTTATCCTAAGAGGAGTGCTAGCAACACTCTCTTTGACACCCTCGTTTCAACACATT CTCTTTTATTAGTTGAAGTTCTTATGGATCCCATCAAATAAGGAGTGGGTACCCATATAACTTATGGATCCCACATGGAT TTCAACCAAGAGTGTGTTGGAAAGAGAGTGTTGCTAGCATTTCTCTTTATCCTTAGTTTTTGTGATTCACTTACATAGTA ACTTCTTTGAAACATTGGTAATCTCTTACTGTTTCTAATTTTTTTTCTGATGAATTTTTCTTCTTTTAGGGATTTCTTGA TTTACGTCTGAAACCTTGGCTTCGGAACATGTTAACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCACTCATTG GTGGCTCTTCAGGGGCTGGGGAGCTCATCATAATTGCATCGGTAGGTTTCTTTGCCATTAAATTTTCTCTATCTTTCTAG TTGTAAAATATCTTCTAATGTTTTTCATTTCGGAATACCCTCGTATTTAATTCAATATGCTGTTTAATTGTAATGCTATA ATATCATGGAAATTTCTCTGATATTTGTAAGTTGTAACTCAACCGTGTTGTGGTCACAACTACACATAACTGCAATTAGC TTCATGCGAGTTCAAGTAGGGCCACTCATGAGGTTATATAAAGTTCAACATTATGTATACATGGCATCATCTTATGATTC ATGGTGTTTGTGTATGCGTACATTTTTGTTTACAACAGAATTGTTCTCTGCTATAGCTTGTGCTGAAGCCCTTCTTTGTC TGCTGAACAGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGTAGCAAAACTAAGA TGGGGGCACATGTTAACTCAACTGCGGTAAGTCTTTTGTTATCCTGAATTTTGTAGTTCTACATTGCAAGTGAGTAAATT GGTTAGACTTGACAAAATCATTCAAGGTTTGGAATCAGTGTGAGCTATTGCTGTTAAAAGCTGCAATATAGACGCATACA CTATTTACCAAAATTTGATTGAGACACTCAGTTTTCCTTTTTGTTTTACCTGCACTTCCGTTGGTCATTATTCTTGAAAT TAATGAGTTGGAGAACTTGTTGCTTCATGCACCAAAGTTACAGGCTCAGATCCTCACTAGTGACATAAGCATTGGAGAGA GACCTTGACTAAACCTTCCGAAATATATTTTTTACTTTTCTTTCAATATAATTTTGGACGGTCCGAATTTCTCTCCAGGC ATTATATCACTGTCGAGAATGCAGTCTCCAAAAGTTACTATGTTTCAGAAATAAAGATCAATGCTTTACATCATGTCTGA GGTGATAATTACTTCACATTTTTTATTGCAGCTTTCCGCGGTTACTTGGATAATTGGCTCCCTCATTATGGCCATTAATA TATACTATTTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTAAGGTATTTCTTGGGATG TTAGGATTTTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAACAAAGAGTCCACACACCT TCTGGCTCTAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAAGAGAAG ACATAGTGAGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGA
CDS sequence (LotjaGi3g1v0004400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCCTGGGTTTCTTGTTTCCATTGCATATATAGACCCAGGAAACTTTGAGACTGATCTTCAGGCTGGGGCACAATA TAAATATGAGTTACTTTGGATCATACTGGTCGCGTCATGTGCTGCTCTTGTTATTCAAACAATGGCAGCCAATCTCGGGG TGGTCACAGGAAAGCACTTGGCAGAGCATTGTAGAACTGAATATGCTCGGGTGCCCAACTTTATCCTTTGGGTTATTGCT GAAATTGCCATAGTGGCCTGTGACATTCCTGAAGTCATTGGGACCGCCTTCGCACTGAATATGCTCTTTAACATACCTGT TTGGATTGGTGTTCTTCTGACTGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAAT TCTTGATTGCATTTCTAGTATTTACAATTGCTGGATGTTTCATGGCTGAGCTTGGATATGCAAAGCCGGATGCTAAAGAA GTTGTGAGGGGTCTTTTTGTGCCCCAACTAAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTCGGGGCTATGGT TATGCCGCACAATCTCTTCCTGCATTCAGCACTGGTGCTTTCTCGGAAAATACCACGATCAGTTCGTGGAATCAAAGAGG CTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGC GGTGCCATTTGTAATTCTCCGAATTTGAATCGAGAAGATCAGATGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTT CCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCAGGTCAAAGTTCTACTA TAACAGGGACATATGCAGGGCAGTATGTCATGCAGGGATTTCTTGATTTACGTCTGAAACCTTGGCTTCGGAACATGTTA ACTCGTAGCTTAGCCATTGTTCCTAGTTTGGTTGTTGCACTCATTGGTGGCTCTTCAGGGGCTGGGGAGCTCATCATAAT TGCATCGATGATCTTATCATTTGAACTTCCGTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGTAGCAAAACTAAGATGG GGGCACATGTTAACTCAACTGCGCTTTCCGCGGTTACTTGGATAATTGGCTCCCTCATTATGGCCATTAATATATACTAT TTAATTACTGGCTTCATCAAGCTGCTTCTTCATAGTCACATGAAAATTGTGGCTAAGGTATTTCTTGGGATGTTAGGATT TTCAGGTATTGCAGTATATTTGGCTGGTATAGCATATCTTGTACTTCGCAAAAACAAAGAGTCCACACACCTTCTGGCTC TAACAGCACCAGAAAGTCAGCAAATGACAAATGAACAAGGCAATGGATCAATCTATTCTCTTCCAAGAGAAGACATAGTG AGCATGCAGTTGCCTCAAAGAAGTGGTCCTGCAGATCTTGACTGA
Protein sequence (LotjaGi3g1v0004400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILVASCAALVIQTMAANLGVVTGKHLAEHCRTEYARVPNFILWVIA EIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAGCFMAELGYAKPDAKE VVRGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALMVAFLINVCVISVS GAICNSPNLNREDQMSCQDLDLNKASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNML TRSLAIVPSLVVALIGGSSGAGELIIIASMILSFELPFALVPLLKFTSSKTKMGAHVNSTALSAVTWIIGSLIMAINIYY LITGFIKLLLHSHMKIVAKVFLGMLGFSGIAVYLAGIAYLVLRKNKESTHLLALTAPESQQMTNEQGNGSIYSLPREDIV SMQLPQRSGPADLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 489 | 489 | 1.5E-286 | ||
| TIGRFAM | 1 | 373 | 373 | 4.7E-123 | ||
| Phobius | 1 | 30 | 30 | - | – | |
| Hamap | 1 | 405 | 405 | 38.41 | ||
| PANTHER | 1 | 489 | 489 | 1.5E-286 | – | |
| Pfam | 17 | 379 | 363 | 1.7E-123 | ||
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 31 | 54 | 24 | - | – | |
| Phobius | 55 | 73 | 19 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 74 | 99 | 26 | - | – | |
| PRINTS | 76 | 102 | 27 | 1.6E-66 | ||
| Phobius | 100 | 104 | 5 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| PRINTS | 104 | 123 | 20 | 1.6E-66 | ||
| Phobius | 105 | 124 | 20 | - | – | |
| Phobius | 125 | 135 | 11 | - | – | |
| PRINTS | 129 | 150 | 22 | 1.6E-66 | ||
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 136 | 154 | 19 | - | – | |
| Phobius | 155 | 173 | 19 | - | – | |
| Phobius | 174 | 201 | 28 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| PRINTS | 179 | 202 | 24 | 1.6E-66 | ||
| Phobius | 202 | 221 | 20 | - | – | |
| Phobius | 222 | 243 | 22 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 244 | 279 | 36 | - | – | |
| Phobius | 280 | 299 | 20 | - | – | |
| TMHMM | 280 | 302 | 23 | - | – | |
| PRINTS | 289 | 308 | 20 | 1.6E-66 | ||
| Phobius | 300 | 319 | 20 | - | – | |
| TMHMM | 315 | 337 | 23 | - | – | |
| PRINTS | 317 | 334 | 18 | 1.6E-66 | ||
| Phobius | 320 | 338 | 19 | - | – | |
| Phobius | 339 | 343 | 5 | - | – | |
| TMHMM | 341 | 363 | 23 | - | – | |
| Phobius | 344 | 364 | 21 | - | – | |
| PRINTS | 349 | 368 | 20 | 1.6E-66 | ||
| Phobius | 365 | 384 | 20 | - | – | |
| TMHMM | 383 | 405 | 23 | - | – | |
| Phobius | 385 | 410 | 26 | - | – | |
| Phobius | 411 | 415 | 5 | - | – | |
| Phobius | 416 | 442 | 27 | - | – | |
| TMHMM | 420 | 442 | 23 | - | – | |
| Phobius | 443 | 494 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0004400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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