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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004600 |
| Transcript ID | LotjaGi3g1v0004600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S12; TAIR: AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9XHS0|RS12_HORVU 40S ribosomal protein S12; TrEMBL-Plants: tr|I3T1V7|I3T1V7_LOTJA 40S ribosomal protein S12; Found in the gene: LotjaGi3g1v0004600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:599753..603079) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTCTTTGCTTATGAGGCCTTAATTTTTTTTAAAAGCCTGCCACAAAACAAATCCAAAGCCCATCGTAATAATGCTTG TTAATTTAGCCATTATCGGGCTAGTTTTCAAAAGCCTCCTTAATCAATCTCAACATTATTTTTTTTTATTTTGAAATATA GAGGGACGATTCGGACTTTTCATACTAAACATTAGGGTTTATAGTTTCTCTTATAAATTACCAATTTTTTTTCGTTTTCA CTTCTCAACCAGTATCACATAGCTAGGGTTTTCGGCGCCTCCATCAAGGTCCTTTCCTCTTTCTCTCAATCCCCCTGTCT CAAAGCTCAAATCTTTTCTTTCGAATCAGAATGCCGCATCTCTCTATTGTATCAATGCTTCGAGTTACCTCTGACTGTTC TGTGTTTTTGTTTTTTGTGTGCAGATAGAAGAGTAATTTTCTTCCGTCCCAAATCAACACCGAAAAATGTCAGGGTATGT TAATTTATACTTTCTGGAGTGATTTTATGCATTGCTCTATTTGCAGTTATGCTTCCTGATTGTAGAGAAGGTAGCTGATT TTTTTTAGTTGAGTCCATGGTTTTGTGCAGATTCTATTAGAAATGGTTCATCTTGTGATGTAGAATGAGATAAACTATTC CTAATAAGCTTTGATATTTTATGTTAATAAATTTTACCTTGATCATTTTATGTTTATCAATTTTCAATACAATACTGTTA GAACACTGTATCTGTTTGCCTTCTATGATTTTAAAATGGTTCATCTTGTGATCTATGGTCATCATTTGAGAATTTAATTA AACCAGTTACTGACCAGACAACATTGCCCTGAATCACTTCGTTTTACCTAGGACTCAAACATTGTAATATAGGTGCATCA CCTTCCTTTGTTCTAACTTCCTGTCCCCTTCATGAGGGCCTGGTTGGTTCATTACTTTTCCTGTTACTGGTTTAATCTTT TAAGGTTTCATTTGTACTAAGATTTCAATAAAGTGTTTGAGATAATCATAGCTCATGGTAATCTGACCAAATTTTTGTTG CATTCATGTTATTTTTTTGGCATCTATGAAATGAATAATTTTTAAAAATTTCGAATACATTAGAGATACCCTTACTGCTG AAGGACTGCTTTTGAAATGTCTGCCAACCTATCAATTTAAACTTGATTGGTCGGGGAATTGAATCTAATAGCCATATATG TGTTACAAATAACTAGATGTAATTTAAAGTAAAATGAATCAGATATTTTACATATTCAGTGAGGAAGTTATTTTTGTTTC TGGGTTTAAGGTACTAGTAAAAAGCTTTATGATCTTATATTCATGTGCTTTGCTCTGTCTCTGTTCCTGACATTTAAGAA TGTTTTACGTTTGCAGTGAAGATGTGGCTGTTCCAGTTGCAGCTGAGCCAGTTGCTGCTGCCATTCCTGGTGAGCCAATG GACATTATGACTGCATTGCAGCTTGTGCTGAGAAAGTCTCTGGCTTATGGCGGTCTTGCAAGAGGTCTTCATGAAGGTGC AAAAGTTATTGAAAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGTGATCAACCCGATTACGTCAAACTAGTGA AAGCCCTTTGTGCAGAGCACAATGTTAGCCTGTTGACAGTTGCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTGTAAGT GCATAACCTCTTACCCTAGTTTTAATTTAATAATTCATTGTGCTAACTATTTACTCCCTATTTCTTAATTAAATTTGCGA ATGTTGGTTAGTTATTATTCTTTATATATGCTATTCAACCTTGTCTTGTATCATTTTCATCTATTCATTTTTTACACTAT TTTCCTTGCAGTTGTGCAAGATTGATTCAGAAGGCAAAGCTAGGAAGGTAACCGGTTGCTCCTGTGTGGTTGTCAAGGTA TGACTTGGATATGAATTGGAAACGTTTGTCTCTTTTGCCTTGTTATATGCATGTTTTAAGTGTTCTCATTTTGCAGGATT TCGGGGAGGAACACGAAGCTTATAATGTTGTTCTGCAGCATGTGAAATCTAACTAAGTCTCAATAAGTTTTGATTTGTGG GTTTCAATTTGTATTTTTTATGATTCTGAGGATATTTTCACCTCAGTTTAGATTTTCTACCAGTGAACTTTGATGGTTTA AACCAACTTTGCCATTATCATTGCTGCTGTAGTTCTGTTACTCAAGTTTGTCTGCATACTCCAATTTTGTTTGTTATTGA GACTGACCTGTTGAGTGAAATGTTCATGAAATGGAACCTGCATAGTGGTGAGTACATGTGTGGCGGTGTGTGCAAGTAAA CACAATAGGGGATGTTGGTAGTCTGGTTAGGCTAATTTACCCCAACATGACACCCATGTCCATATGCTCTTCAAGTCTCG TTTAATTAGTTAGCACTTTTGCAAAAGCAGAAACTTCGGTTATTCTTGCCCTTTGATTTTCCACTTAGCATGGACTCCAT AGACTTGTGTCAAAATCAAATGTAAGCTTTACAGAAGTCAATTCTTGCAAACTCTCCCAAAATTCTTCACAGCACTGTAC TATCCTAGCTTACATGTGATACCTTCTACATGAGTTTATCCTAAGTTCACCCCAGACCATGCTAAATGACACTCTTCCGT CGCACCATTTAAGGGGCTGTTTGTATACCTTCTCTTTGTTTGAATGGAAGAAATAAAAATTAGAAAGTAAACTTGTGTTT TCACAATTTCCCCATTTTTTGTTGTTGTCAAACAAACTATATGATTCCCATTTTCTGTTGACTAGCTGAATTGGTATTAG CCTAATAAGTGGTTATCGTAAGATCAAAGGGTTTGTTGGTTGTCTACTTTTGTTTTCACAACTAGTGTCGTGTTTTGGGT TTAACTTACATTCCCATAGTTGGAGGGCTGAAATCTCCTTATATCTAGTAGAATTTTAGTTGGTTGATAACCCTTAAGAA AATTTAATGGAGCTCCTACCCAGGAATGAGTGTTGCATCTCCCTGCGTCTAGCAGAATTTTAGTTGATTGATAACCCTCC TTAACAAAATTCCATGGTACTCCTACTCAAGAATGAGTGTTTGCACTGGTGCCTTGCCATGTGGTTTGGAAATGTTTTTT CTTCGTTTTACTATTCTTGTGACCAAAAAAATAAGAGTAAAATACACTCACCCCCCTCAAGATTTGTGAGAATAACACTT AACTCCATTCTTATCCAAAATATGCACTCCACCCCAATAATAATCTCACAATTACACTTAACTCAATTCTTCTCTAAATT CTACACTCCACCCCACCCCCTTTAACACCATCCAAAAGAGGCTAACG
CDS sequence (LotjaGi3g1v0004600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGTGAAGATGTGGCTGTTCCAGTTGCAGCTGAGCCAGTTGCTGCTGCCATTCCTGGTGAGCCAATGGACATTAT GACTGCATTGCAGCTTGTGCTGAGAAAGTCTCTGGCTTATGGCGGTCTTGCAAGAGGTCTTCATGAAGGTGCAAAAGTTA TTGAAAAGCATGCTGCACAGCTCTGTGTTCTAGCAGAAGATTGTGATCAACCCGATTACGTCAAACTAGTGAAAGCCCTT TGTGCAGAGCACAATGTTAGCCTGTTGACAGTTGCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTGTGCAAGATTGA TTCAGAAGGCAAAGCTAGGAAGGTAACCGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGGGAGGAACACGAAGCTTATA ATGTTGTTCTGCAGCATGTGAAATCTAACTAA
Protein sequence (LotjaGi3g1v0004600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGEDVAVPVAAEPVAAAIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKAL CAEHNVSLLTVASAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 3.5E-77 | – | |
| PANTHER | 1 | 143 | 143 | 3.5E-77 | ||
| Gene3D | 11 | 143 | 133 | 1.2E-57 | ||
| SUPERFAMILY | 23 | 141 | 119 | 4.32E-31 | ||
| Pfam | 29 | 122 | 94 | 4.2E-26 | ||
| ProSitePatterns | 29 | 47 | 19 | - | ||
| PRINTS | 33 | 46 | 14 | 1.7E-24 | ||
| PRINTS | 47 | 63 | 17 | 1.7E-24 | ||
| PRINTS | 88 | 109 | 22 | 1.7E-24 | ||
| PRINTS | 113 | 126 | 14 | 1.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0004600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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