Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0006000.1

Overview

Field Value
Gene ID LotjaGi3g1v0006000
Transcript ID LotjaGi3g1v0006000.1
Lotus japonicus genome version Gifu v1.2
Description 3-isopropylmalate dehydrogenase; TAIR: AT1G80560.1 isopropylmalate dehydrogenase 2; Swiss-Prot: sp|P29102|LEU3_BRANA 3-isopropylmalate dehydrogenase, chloroplastic; TrEMBL-Plants: tr|A0A151SPV9|A0A151SPV9_CAJCA 3-isopropylmalate dehydrogenase; Found in the gene: LotjaGi3g1v0006000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:761232..765884) extracted from Lotus japonicus Gifu genome v1.2.

ATCACCTCACATTGTCGTGATAAAATTGTGTACCTATTTCTTCTATCTTGATAAACATGTGAAACATTTTAAAGGACTGC TTACCCAAAAAATGAAAAAAACACGAAGGACTTGTTGACACATTCGTGTTTCAGTGCAGAGTAGCAGCTGTTATCAAACC CCAAAAATGGCGGCTTCTGTGCAAATGCAGCTCCTCCACGCCAGACCTATGAAAGCCTCTCCGTTTCCCTCATTCTCCTT GCCGAGACCAACCTCCATGCGGTGTAGATGTTCCGCCGCCACCCCTTCGAAAAAATCCTACTCCATCACTCTTCTTCCCG GTGACGGAATCGGCCCTGAAGTCGTCTCCGTCGCTAAAGACGTTCTTCTCCTCGCCGGCTCTCTCCATGGTTTGTACCTT CATATAATCGCTTTTTTCTCATCTGGGTACCCAAAAATGCTATCATAATCGCTTCTTTCTCATCTGGGTACTTGTGTTTC ATCAGGGATCAATTTCGAGTTCAGAGAGATGCTTCTGGGTGGAGCTGCCTTTGATGCTGCGGGAGTCCCCTTACCTGACG AGACCCTTTCCGTTGCAAAGCAGTCTGATGCTATTCTCCTTGGTGCCATTGGAGGGTGTGCTTACCTTTACTTTTACCTT TTTTCAAATTTTGTTACTTTTCTGTGCTTCTTGAGCTCATTTTGTCTGTTTGGTTCAAAGCTATAAATGGGATAAAAACG AGACGCGTTTGAAGCCAGAGACGGGTCTGCTTCAGCTACGAGAAGGACTTCAAGTGTTTGCAAATCTCAGACCAGCAACT GTGTTCCCACAGGTAACAATAGTTTGCATACTTCATTTCCCAATTCATGGTTTAGTAGTGAAAGGGAACATGACCTTGCT TGTTTTTGCTTGCAATTAAACTGCATATCTGCAATATGAATTTGCACTGGGAGAAAGGGTAAAACAATGATGAAACAAAT GAAAAATCAGAGAAATCTTAGTGATAGACTTTACAATATGGTAATGGTGTGCAGAGATAGGTTTTTTTATTCCTTACTAT TTCGTAGTAGTTTTCGACCTATCTATATTTGCTTCTAATTTGTGTTAATTCTTCTGTAGTTAGTGGATGCTTCAACTTTG AAGAAAGAGATTGCTGAAGGGGTTGATCTTATGGTTGTAAGGGAGCTAACTGGAGGTCTGTAATGTCAATTCTTCAGTCT ATATAAATAATCACAAAGTCTCATATGTTCTTGTACTATTTGAAGTTTTAAAGATATGTGCAGCTAATTCACCGGACTTG GTCTTGTTGTTGTTCTGTTGTTATTCAGGTATCTATTTTGGAAAACCCAGGGGCTTTGGTACCAATGAAAATGGTGAAGA GTTTGGCTTTAATACTGAGATTAATACTGCACATGAGGTACTTTACTATTACAAGATGGTTCTGTAGATTTAAAAAAGTG CATTCCCAAAGAATGGGCTCTTATAAGATATGACTGCAAAGGATTTAAATTCATTGCAACAGATTTAATGGAGGTTGTTG ATCTTGGTTGAATATTTATGTGAAAGAGAATTCATGTGAAGGATTTAAGTTTAATTTTTGTTATATGATCATTCTGAATG ATTTGGTTGAATTGAATCAATGCTAATTGTGAACAATATTTCTAATTCAACTAAAAATTGTGGTAGCAGGAGCTGGATTT TCATAGGATCTTTTGTGTATTTTTCCCAATTATTTTGAAGTAGAGGAAGGATAAGGGACAGTACTATGTTATGCAGATTT CACATTTTTGCCTTCACTCTAAAGGAACTTTTACTATTTTAGTTCTCTCCCTTGAGAGCTGTTTCTTTCTTGTCTCTAAC TGATTTTTATACTATCTCTGTATCTAAGATTCTCAAGTTAATAATTTGTATACCAGATTGATCGCATAGCTCGTGTTGCA TTTAAGATTGCTCGGCAGCGTCGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGTACTTTTGCTAGACGG ATCTTTGAAACTTGCTCCAGATTTTTGTAAATTTCTTGCCATTCTATTGTATTATAAGTTTAGAAAAGACTCATGGCAGA TGGATTCCCTATGAGTCTTGCCTTTTTTTTATATGCACAGAACATTAGTTCCAATGTAAATCATGTAATAACACGAGTTG AGCTGCACGCCGTAATTTTCTTAAACTTGAAATTGGGAAGCTTCGATCGTGCTTCAAAGAAAATACCTCCTATGTTTTAA GTTCTGCTTAGATGAGGTGGTATTAAGACCTTCTGAGATAAATTTAGGACAAAAGGTGCCTACCCTCTGCTAATGTTTTA ATGTTGTTGAAAATTGCAGAGTTCTATCAATCTGTATTTATAAATAGGTTATACTTTATAAGAGTAAATATGATAGATGT TGACTTGGATTTTGCATTTTCTTTTTAACTTGATAGCCACTTGGTCATGAGATTGGGACATCTGCTAGCACTTTTCCTAA ACCATAATATGATACTTCCAGATAGATTTAACATATTAAATGTACTTTCTAATGCTTTGCTTGCCCAAAGTGATATATGA TGATTGCAGTGATAACTAATTCATGGTGGAATATATCTTAATTTTTTTTAGTGGCTCTTGCTGATTTTAATACTATAAAT TAGCCACTAACTACCGTCAATTCAATGGAAACTTGACAATACTTCAACATAACTACCATGCAAATGCTTCAGGAAATATG TTGATGATTGGGTTGAAAACTTGAAATGGTATTTGTGATCATGTGCTGTGATAGGCATTAGTTGCTCCTGAAGTAGCTGA ACAAGGAAATCATGAATTAATTAATTGAAAGCGTATTTAGGTGTCACGGTGGATGCTAGTAACCTTTTATATGAAAATTG CATGACCCCTGAATGATTGAAACTTGTGCATGTTTTGGTGACTTAAATGCACAAGAACATACTTTTGATGGTTTTAAGCA CAGTTCCTATTTGAATTCTCCAGGCATCCATGTTATGGAGGAAAAGAGTAATTGCATTATCACACGAATATCCTGATGTT GAGCTCTCACACATGTATGTTGATAACGCCTCAATGCAACTTGTTCGCTATCCAAAACAGGTTTGCTTTTGGAATATATT AACATAAATCTGTCTTTCATTTTATTTGTGGCTATTCAAATTTATATTCACAAAAGAAAAGTTGTTGGAATGATGAAAAT GCAAGTATTACAGCATTCAACTCTGAATTTTGCAGTTTGACACAATCGTAACAAACAACATTTTTGGCGACATATTATCA GATGAGGCTTCAATGATTACTGGAAGTATTGGGATGCTTCCTTCAGCCAGCCTTGCGGATTCGGTATGAAAACTATATCG ATATCAAATCATAATATAGATCATGAAGTTTATCTTGCAATGCTTTGTGTTATGCTAGAGGCAAGTAACATTATCAATTT CACTTGGAATTTACTGGATTTTTATTGGATCAGGGACCTGGGCTCTTTGAACCTATACATGGTTCTGCACCTGATATTGC TGGACAGGTTCGTTTCTTTACTACAGTTCTTCATTTGCCTTCACGCGACATGCTTAACGACAACATAATTATTTATATAC AGGACAAGGCAAACCCATTTGCCACTGTTTTAAGTGCCGCTATGCTTTTAAGATATGGACTTGGAGAAGAGGAGGCTGCA AAAAGAATAGAGGATGCAGTTGTAGATACTTTGAACAGAGGATTCCGAACTGCTGACATATATTCTGCTGGAACAGTAAG CACCTCTTTCATTATCTTGACATTAGTGTTGTGAAAACACTTGTTTTTTTGGTGTTACATTCCAAAATTCAGATTATCTT CACCTTGATTAATTACCACAAAAGGCTTGAGATAAGAAAAAGGCCATGGAAGCTAAATGTTTACAATTTGCATATTTCTC CACTTTTTTCTCCCTTTTGACTAGTGTTCTCATAATTGTCGCATTGAACTTGGATTGATATGTTTTGTTGAATAAACTTG ATGTTTGGATCGTGTGTGAATGCAGAAACTAGTAGGATGCAAGCAACTGGGTGAAGAAATACTGAAGTCAGTTGAATCTC TCGTTCCTGCTGCAGCAGTGTGACTTAAGACCAACTCAGCATAGAATTTCAGGGCCTTGTTTGAGACCAGCTCACATTGA GTATCAAAGCTCTCAGATTTCAGAGGTTCTGCTACCATCTGCATCAATCATCATGAATGCTGCTTTCAACACCCAACCTG TGATTGAACTTTCGGAAGTGGCAAGGTTGTTGTTTTTTCCCCGGGATTATTCATTTGTTAGTTTCTTCCATACGCGGAGC TATTTGTAACAGTAGAATAATGACTGGTCTAGAGATTGAACTTTTCACTGCCGTAATGAAAACCCAGAAACTACTTTTAT AGCATGCACACGACGGACACAAGATGTTCCAAGATTAAAAACGTCCCGTATGATTTGAAGTGTTGCATTTCGTCTTACGC AAGTGTCTAGTATATGCATTTGACATGAATATCAACTATGAAGAGTCTTTTTTTTTTTTTTTATGTCCCCGAGGGTTAGC TCAAGTGATAAAAAAGGCTAGGGGAATGAAGGGTGAAGAGGCCTGGGAAAGAATTAATTTGCTAACATTACTAGTAACTA ACATTAGTCAATA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0006000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGCTTCTGTGCAAATGCAGCTCCTCCACGCCAGACCTATGAAAGCCTCTCCGTTTCCCTCATTCTCCTTGCCGAG ACCAACCTCCATGCGGTGTAGATGTTCCGCCGCCACCCCTTCGAAAAAATCCTACTCCATCACTCTTCTTCCCGGTGACG GAATCGGCCCTGAAGTCGTCTCCGTCGCTAAAGACGTTCTTCTCCTCGCCGGCTCTCTCCATGGGATCAATTTCGAGTTC AGAGAGATGCTTCTGGGTGGAGCTGCCTTTGATGCTGCGGGAGTCCCCTTACCTGACGAGACCCTTTCCGTTGCAAAGCA GTCTGATGCTATTCTCCTTGGTGCCATTGGAGGCTATAAATGGGATAAAAACGAGACGCGTTTGAAGCCAGAGACGGGTC TGCTTCAGCTACGAGAAGGACTTCAAGTGTTTGCAAATCTCAGACCAGCAACTGTGTTCCCACAGTTAGTGGATGCTTCA ACTTTGAAGAAAGAGATTGCTGAAGGGGTTGATCTTATGGTTGTAAGGGAGCTAACTGGAGGTATCTATTTTGGAAAACC CAGGGGCTTTGGTACCAATGAAAATGGTGAAGAGTTTGGCTTTAATACTGAGATTAATACTGCACATGAGATTGATCGCA TAGCTCGTGTTGCATTTAAGATTGCTCGGCAGCGTCGTGGGAAACTTTGCTCTGTTGACAAAGCCAATGTACTAGAGGCA TCCATGTTATGGAGGAAAAGAGTAATTGCATTATCACACGAATATCCTGATGTTGAGCTCTCACACATGTATGTTGATAA CGCCTCAATGCAACTTGTTCGCTATCCAAAACAGTTTGACACAATCGTAACAAACAACATTTTTGGCGACATATTATCAG ATGAGGCTTCAATGATTACTGGAAGTATTGGGATGCTTCCTTCAGCCAGCCTTGCGGATTCGGGACCTGGGCTCTTTGAA CCTATACATGGTTCTGCACCTGATATTGCTGGACAGGACAAGGCAAACCCATTTGCCACTGTTTTAAGTGCCGCTATGCT TTTAAGATATGGACTTGGAGAAGAGGAGGCTGCAAAAAGAATAGAGGATGCAGTTGTAGATACTTTGAACAGAGGATTCC GAACTGCTGACATATATTCTGCTGGAACAAAACTAGTAGGATGCAAGCAACTGGGTGAAGAAATACTGAAGTCAGTTGAA TCTCTCGTTCCTGCTGCAGCAGTGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0006000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAASVQMQLLHARPMKASPFPSFSLPRPTSMRCRCSAATPSKKSYSITLLPGDGIGPEVVSVAKDVLLLAGSLHGINFEF REMLLGGAAFDAAGVPLPDETLSVAKQSDAILLGAIGGYKWDKNETRLKPETGLLQLREGLQVFANLRPATVFPQLVDAS TLKKEIAEGVDLMVVRELTGGIYFGKPRGFGTNENGEEFGFNTEINTAHEIDRIARVAFKIARQRRGKLCSVDKANVLEA SMLWRKRVIALSHEYPDVELSHMYVDNASMQLVRYPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLADSGPGLFE PIHGSAPDIAGQDKANPFATVLSAAMLLRYGLGEEEAAKRIEDAVVDTLNRGFRTADIYSAGTKLVGCKQLGEEILKSVE SLVPAAAV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42979:SF6
1 405 405 2.2E-228 –
PANTHER
PTHR42979
1 405 405 2.2E-228
IPR004429
SUPERFAMILY
SSF53659
39 397 359 5.94E-116 –
Gene3D
G3DSA:3.40.718.10
43 407 365 3.0E-151 –
Hamap
MF_01033
45 399 355 49.471
IPR004429
SMART
SM01329
46 395 350 3.2E-193
IPR024084
TIGRFAM
TIGR00169
47 395 349 1.3E-152
IPR004429
Pfam
PF00180
47 395 349 1.7E-132
IPR024084
ProSitePatterns
PS00470
286 305 20 -
IPR019818

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003862
Molecular function 3-isopropylmalate dehydrogenase activity Catalysis of the reaction: 3-carboxy-2-hydroxy-4-methylpentanoate + NAD+ = 3-carboxy-4-methyl-2-oxopentanoate + NADH + H+.
Subterm of
GO:0009098
Biological process Leucine biosynthetic process The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid.
Subterm of
GO:0016616
Molecular function Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
Subterm of
GO:0051287
Molecular function NAD binding Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0006000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…