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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0007000 |
| Transcript ID | LotjaGi3g1v0007000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing family protein; TAIR: AT3G61600.1 POZ/BTB containin G-protein 1; Swiss-Prot: sp|Q9FPW6|POB1_ARATH BTB/POZ domain-containing protein POB1; TrEMBL-Plants: tr|A0A0B0N127|A0A0B0N127_GOSAR BTB/POZ domain-containing POB1-like protein; Found in the gene: LotjaGi3g1v0007000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:821755..824327) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAATAGGACATGCTTATAGCATCAAAAATAGGACATGCTCCTCTATCTTTCGCACTTTGATAAACCCTCTCCACTTT GATCTGTTTGAATTCTCAAATTATATTTTTTAGGGTTTGATGTTCTAGAGAAGGAGATGGAGTCTGATTCTTGTGAATCC AGTTTTAGCTTCGCTTTCAATGATACCCGCTTTTCCGATAAGCTTCTCCGTATCGAGATCATGAATGACCCGATCAAGAG AAGGAGATGCGAAAACGGTCTTTTACTCTCGCTCTTCATCGAATTCATTCTTGTGATTCTGAGTGATGTAATTTGAGTTT GTTTTGAGAAATATATATATTTCATAACTAGAAACTTAGTAAGTGATTCTCATGGATTTTGCACTTTTTTAGTTAGTTCT ATTTCTATTCATGAATTGGGTGTGTTTGTCTAAAGTGTGCAACTTGTCTAATTACATACCACTATTTATCTCACTTGCAG TTTTGGATCTTACTGCTGATGAACAAATTTCAAATTAATTTAATATAGGTGATGAAGCTGCAAACAACAATGACTCAATC TGGACCATGGATTACTCTGGCGCTACTGTTGTTAGAGTTAAAACACTGCATATCAGTTCTCTTATCCTGGCTGCTAAAAG CCCTTTCTTCTACAAGGTAGATTAAGACCTCTTCTCTTCTTTATGTATAGTTCTGCGCCTAGCCTTCATATTTTTTATAT TTTCAGCTTTTCTCAAATGGGATGAGTGAGTCAGAGCAGAGACAGATCACCCTCAGGATTAATGCATCTGGTAACTTTTT ATATATTTACCTGATCATTTTAATTTTCACTAAATAGTCACCTAAATGTTACTTCTTTTGCATTACAGAAGAAGCTGGTC TCATGGAGCTACTCAAATTTATGTATAGTAATACCTTGAATATTTCTGCCACACCTGCTTTGCTGGATGTGCTTATGGCG GCTGATAAATTTGATGTGCCTTCATGCATGAAATACTTGCTAAATCCGCCCATGACACTTGACTCTGCATTACTCTACCT GGAGCTTCCTTATACTGTTGTTGCAGCCCAACCACTGATTGATGCGGCAAAGCACTATCTTGTTGACCGATACAAGGATA TGTATAACAAACAGTAAGCTTTTGCATTTTATTTAACTTCACTTGCATTATCGTAAGGGAAAAAACTTGAGGAACAAACC ATGGATTCAAAGAAGGGACTATTGTGTTTTTGTGTATGCGTGTGTCGCATCTAATGTTTGAAGCTTGGTGGATGACATTT TCTTTGTTCAATCAACTTCCTTCGTGTTATAAACATTTGAGAGGGTTTTTCTATTATGGCATTCCATGAAGTGTCTTTTG CAAAGCATCATTTTCTCTACGACGACATTATTGATTCTAATTGTCCATTCTTTTGAAAAAGACTTGTTTCTTTTGTTGTC ATTCATCATAATGTCATCTTTCTTTTTTAGTGCTAATTATCTTGTGTTTGACCAGGGTTAAGGAAGAGCGTTTGGCCTTG CCTCTCTCTGGAATAGAGGCAATCTTGGCTAGTGATGATCTCGTGGTTGAATCAGAAGAAGATGTATATACCTTTACATT AAACTGGGCTAGACAAAAGTACAAGAGTCTGAAAGAAAGACAAGAAGTTCTTGGTACACGTCTTGCGCGTTTAATTCGCT TCCCCTATATGACATGTGAAAAGCTTAAGATTGTTTTAACCTGTAATGACTTTGAACATGAGGGCGCATCTAAGCTTGTA CATGAAGCCTTATCTTTCAAGGCGGAGGCTCCAGATCGCCAACAGACTTTGGCAGCAGAAGAGTCTATTTCCTTGAGTCG TCGTTTCGTGGAGAGAGCATATAAGACAACGATGGATATGTGTCTGACGCGGGCGGAGTGTGTCGCTATGTTCCCATCTG GTCATGTGCATTCTAAACCATCCCGTTTGGCTGGACAAATGTTTTTTCTATCAGCACAATGTGACATGGACGAACATGAC TTTTTCCATTGCTGTTCGTTGTCTTTGGGAATGAAGACAGGTTACTCAAGAAGCATTGCTGTGGACTTTCAATTTAGCGT AAGGTTGAGGCCAACAGTTGATTATTTTATCATGTGCAAATCCAATCACACATTTACCCCAGGGACCCGTAGCGTCAGTA GAATTAGAAACCCCTTTAAGGTTCCATGGACTTCATTCATTGCTGAGGATAGTCTTTTCTTCATTAACGACGTTCTCCAC CTTAGAGCTAAGCTTTGGATCGCACATTGATCCCCTTATTTCTGTTTATGAACTATTTATTCTAGTTTGATATTATGCTT TATTTATTCTTTGTTGCATTGGTTTTTAGTGATATTATGCTTTATTTATTCTTTGTTGCACTGGCTTTTAGTGCTCGTCC CGTATGTTGTCCTACCTCTATTCCTCATTTTTTTTGCAAGAGATGTAAAATTTCATTAAACGGAAGGCATAGAAGCCATT ACGGCATTGTTTACAAAAGTGTTCACATCTGGTGGAACTTCCTCCACCCACACCAAATATAAGAACCAAATTGAGTGGAC GCGTTAGTCCTTT
CDS sequence (LotjaGi3g1v0007000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTACTCTGGCGCTACTGTTGTTAGAGTTAAAACACTGCATATCAGTTCTCTTATCCTGGCTGCTAAAAGCCCTTT CTTCTACAAGCTTTTCTCAAATGGGATGAGTGAGTCAGAGCAGAGACAGATCACCCTCAGGATTAATGCATCTGAAGAAG CTGGTCTCATGGAGCTACTCAAATTTATGTATAGTAATACCTTGAATATTTCTGCCACACCTGCTTTGCTGGATGTGCTT ATGGCGGCTGATAAATTTGATGTGCCTTCATGCATGAAATACTTGCTAAATCCGCCCATGACACTTGACTCTGCATTACT CTACCTGGAGCTTCCTTATACTGTTGTTGCAGCCCAACCACTGATTGATGCGGCAAAGCACTATCTTGTTGACCGATACA AGGATATGTATAACAAACAGGTTAAGGAAGAGCGTTTGGCCTTGCCTCTCTCTGGAATAGAGGCAATCTTGGCTAGTGAT GATCTCGTGGTTGAATCAGAAGAAGATGTATATACCTTTACATTAAACTGGGCTAGACAAAAGTACAAGAGTCTGAAAGA AAGACAAGAAGTTCTTGGTACACGTCTTGCGCGTTTAATTCGCTTCCCCTATATGACATGTGAAAAGCTTAAGATTGTTT TAACCTGTAATGACTTTGAACATGAGGGCGCATCTAAGCTTGTACATGAAGCCTTATCTTTCAAGGCGGAGGCTCCAGAT CGCCAACAGACTTTGGCAGCAGAAGAGTCTATTTCCTTGAGTCGTCGTTTCGTGGAGAGAGCATATAAGACAACGATGGA TATGTGTCTGACGCGGGCGGAGTGTGTCGCTATGTTCCCATCTGGTCATGTGCATTCTAAACCATCCCGTTTGGCTGGAC AAATGTTTTTTCTATCAGCACAATGTGACATGGACGAACATGACTTTTTCCATTGCTGTTCGTTGTCTTTGGGAATGAAG ACAGGTTACTCAAGAAGCATTGCTGTGGACTTTCAATTTAGCGTAAGGTTGAGGCCAACAGTTGATTATTTTATCATGTG CAAATCCAATCACACATTTACCCCAGGGACCCGTAGCGTCAGTAGAATTAGAAACCCCTTTAAGGTTCCATGGACTTCAT TCATTGCTGAGGATAGTCTTTTCTTCATTAACGACGTTCTCCACCTTAGAGCTAAGCTTTGGATCGCACATTGA
Protein sequence (LotjaGi3g1v0007000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYSGATVVRVKTLHISSLILAAKSPFFYKLFSNGMSESEQRQITLRINASEEAGLMELLKFMYSNTLNISATPALLDVL MAADKFDVPSCMKYLLNPPMTLDSALLYLELPYTVVAAQPLIDAAKHYLVDRYKDMYNKQVKEERLALPLSGIEAILASD DLVVESEEDVYTFTLNWARQKYKSLKERQEVLGTRLARLIRFPYMTCEKLKIVLTCNDFEHEGASKLVHEALSFKAEAPD RQQTLAAEESISLSRRFVERAYKTTMDMCLTRAECVAMFPSGHVHSKPSRLAGQMFFLSAQCDMDEHDFFHCCSLSLGMK TGYSRSIAVDFQFSVRLRPTVDYFIMCKSNHTFTPGTRSVSRIRNPFKVPWTSFIAEDSLFFINDVLHLRAKLWIAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 3 | 72 | 70 | 13.115 | ||
| SMART | 5 | 103 | 99 | 2.7E-5 | ||
| PANTHER | 6 | 395 | 390 | 5.2E-160 | – | |
| Gene3D | 6 | 114 | 109 | 4.3E-16 | – | |
| PANTHER | 6 | 395 | 390 | 5.2E-160 | – | |
| CDD | 8 | 86 | 79 | 3.92778E-14 | – | |
| Pfam | 9 | 93 | 85 | 7.4E-14 | ||
| SUPERFAMILY | 12 | 94 | 83 | 3.45E-12 | ||
| Gene3D | 115 | 225 | 111 | 3.0E-10 | – | |
| CDD | 119 | 206 | 88 | 1.53808E-8 | – | |
| Pfam | 121 | 211 | 91 | 3.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0007000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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