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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0008900 |
| Transcript ID | LotjaGi3g1v0008900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q58208|Y798_METJA TPR repeat-containing protein MJ0798; TrEMBL-Plants: tr|I3S715|I3S715_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0008900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1020007..1025202) extracted from Lotus japonicus Gifu genome v1.2.
CACAATTCCTCATGTATAAAAATGGGTCTTCCCTTCTTCCATTCAGATGTTTTAGTAGTGGTGGCTTGACTGGCTTCTCT TCTCTCACTCATAATGTCTCTCTATCACTCTCACAATTTGTCTTTCAGTGTTTCTACTTCCTTGCTTTCCTAATTCGGAA CTTTATAGTTTTTCAACTTGCACCATATATTTCTTAGCACTAAATTATGTAGCACTATATTCCTACTACATCCTCATCTA TATATATATATCATTCTCTGTATTTGGTAGCTCTCATATTCATATCCCTTCAACTCCTTGTTCAATATATTATCTTTGAA CCATGTTACTAAGAAGTTTAAGTTCACCAATTCCAAGTTCACTGCTGCCAAATTTCAAAGAATTTTCCCCTGAGCCTGAG AAGAAAAATTGCATATCATGTAGTAGTGGGATGGGGAAAGAAAGCGATGGGGTGGAAGAATCAAAACAAAGAATTCACAA CAAAGTTAGAAAGTTGCAAACTTTAACAATGGGTAGTGGGATGGGCAGTGATGGTGGCAGTGATGGTGGCAGTGATGGTG GCAGAGCTTGTGGCGGTGGTGGAAGAGGCTCAGATGATGATGGAACACATGCTTATTACCAGAACATGATTGAAGCAAAC CCCAACAATGCTCTTTTCCTAGGAAATTATGCTAAGTTTTTGAAGGAGGTAATTGGGTTTATATGAGTGGTTAACTACAT GAGCTTGATCATGTTCTAAATGCTGCAAACGAAACAAAATTTCCCATTTGATAAACTTTATTTGAGCTGATCTTATGAAA TAAACATCTATATAAGTGTTTGAGAGAACTTATGTAAATAGCTTATGACATACGTTTAAGCTGTTTTGAGCTGTTCATAT TAGCATATGAATAAGTACTTAGGATTATGCTTAACCTATTTACAGCTTATTTCAGTAAGTTTCCTGAATTAGCTTATAAA TAAGCGCTTATTTTCATACATGTTTAATCAAGCTGTTTGCTCAAATACATCCTTATTCTAATCTCACATATTATTGACCA ACCAAAAGAATAAAAAAGAATACCATGCTAGCTAGAAAATATACTTGTAGATTGGTTCATATTTAGAAATGGAAAGAAAG CTATCATGGAATTTCTTGTTTCTTTCAATTGGTTTTTTCTTCATGAGATTCAATTTGTAAACAGGTTTGTGGAGATTACC CTAAAGCAGAGGAGTATCTTGAAAGAGCCATTTTGGCTAATCCTGGTGATGCTAATGTTTTATCCCTCTATGCGAATTTG ATATGGCAAAAAGAGAAGAATGCTGATAGAGCTGAAGGCTATTTTGATCGAGCTGTTAAAAGTGCCCCGGATGATTGGTA AGATAAATTAAATCTACATGGATCATGGCTTTTCTTTTTCTGCATACCTTCTCCTCATCATTCATAGGACCAACTAGATT CATTTTTTCAATGTATCTTTTAGTTCTTTTGTAGCAGAATGTTATATACTTGGGTCTAAATAGGAATTTGGAGCTCGTGT AGTTGAATTTTTTAAGTTAACTACAATTATGACTCTATAGTTGTCTGATCAAACTCAAACAACCTAAATTTAAAGAGTCT GATCATGCATTTAAAAACCAATTTTAAATTTAAATCGTCCCATCTTGATCCGATGACTATAAAGTTGTGACTGTAGTGAA TTTAGAAAAATCCGACGATTAACTATGTTATGATTTGATGGTTTGTGATCCAAGATTTTCTTTTTCTTTTTCTATTTTGT TCTTCACAATAAATAAGGTTGTGTGCTGATTTTTCTTGATTGCTATAAAACTAATGTATAAACCTTAATCATTGTCAATT GTTATGTCAGCTATGTCCTGGCTTCTTATGCCAAATTCCTCTGGGATATTGAAGATGAAGACAAAGACAGCCACCATAAA ACTGATCAAAGCTACACATATCCATCTGACCTCTTTCAAGGAACTTATGGCCGCCCACATGCTACTGCAGGTCAATTCTG GGAAATATAACTTCTGGATATCAGAATTGATTTTGATGAAACAGAAATTGATCCAAACATGCTGCTAGCAGAAGTGGAGA CTGTAGTAGATAGCTTATGTTCAAAATAAGAGATAGCAGTGTTCTATATGTTGTGTGCTGGTGAGGCTTCTAATGTTTTA GAGAATGTGAAATTTTGGTAGAAAACTTGCAATTAAGGAACAATCCTTTATGGCTTTGTTATGTTCTTTGTCTTAACTAC ATTTCCTAAAAGTTATAATTCATATGCAGTAATGTATATATGATCACCAGTGTGAGCATCGGTCAGTACGCAGTTTGTAT GGTTCATCAAACTTAACTATAATAAACTTAAGTTTACTCAACTTAATTGTAGTACTCTTTTGAACAAACTGAATTACTGA AACCTAAATTTCATTGATTCATTCTGCCCTTATTTCATTAAGTTAATTTCATAGGGGTTCCAAATCCAAACACAGCAACA AGACTAAAATTCCAATTCAGATATGTACAGATTGTGGAATCAAAAGAAAGAAAAAAGTAAGTTGCATCATCTAGTTCTAG TTACAATAAACATTTATTCACACCAAAGTCCACCAGCACCAAGAGAGAAATATGAATAGATCAGAGAGAAATAAGAGGTG TGATCAGTGATGTGATAAGAAAATAAAGTGAGTGAAAATGGAATGGAAGAGAAAATGAGTACTAATTTACCAAAACTTCT TCTATCTATCTCATCTTGGTCCTGATAGCTGAACACAGGACAAGGGAACATTACTATAAAAACTAGCCTGTCCTGAAGAA CTTGCTTCTCCACTGCTCATTTTCAAGAAAGCTGAATAAGTAGTGGATTGAGACAATGAAGGAGGATCAGTTACAGTGCA CAAACCTTCAAGCATTTGAGCTACTTTACTCATTGAAGGCCTCAAACTCACATCATCTTGTATGCACCAAAGTGCAACTT TAATAGCAGTTACAGCTCTATCATCCTTCTCATCAATATCTATCTTTTGATCAAGAACCTCTCTCAGTTTACTTTCTTCC ATCATTCTGAAGACATAGGAAGGAAAATGTGCTTTCTCAGAACCTTCCCACTGATCATAGTTCTTCCTTCCTCCAATGAT CTCAAGCAAGAGCATCCCATAGCTGAACACATCACTCTTCTCTGAAATTGCATAGTTAGTAATCCATTCTGGAGCCAAAT ACCCTCTTGTGCCTCTCATAGTTGTGAAGACATGACTTTGTTCTCTGCTCATTAGCTTAGCCAATCCAAAATCTGAGACT TTAGCCATGAAATTGTCATCAAGAAGAACATTTTGTGGCTTGATATCACAGTGGATGATCCTCACTTCACATTCCTCATG AAGATATGCTAAACCCTTTGCAGTGCCTACTGCAATGTTGAACCTTGTTTCCCAATTCAACAAGAAAGTGTTTTCACTGT TTTTGAAGATCCACTTATCTAAAGAGCCTCTTGCCATGTACTCATAGACAAGTAGGCGATGTGGGCCTTCAGCACAAAAC CCTTTTAGCTTCACCAGATGAACATGATGTATGCTTCCAATTGTGGACACTTCTGCTTTGAACTCTTTAGCACCTTGTCC AACACCTTCCAATTTTTTCACTGCTAATTGGGTTCCATCTTCAAGCACACCAAGGTACACTGAGCCAAAACCTCCTTCAC CAATTTTTGTGGAGAAGTTCTCAGTTGCTCTAGCAAGAGAATTGTAAGTGAATCGTGCTGGCATCGAAGAGAGATTATCA AAGAAATCATCATCATCCTCTTGAGGGTACTCATCAAGATTCTTCTTCTTGTTGAAGTACCAAAATCCTGTTATGAGGCC AGCAATAACAAGGATTGTAAGAATTACTACCACAAAAACCAGCACCATGTTCCTCCTTTTATTTTTGCTGCCATTTCCAT TAACATTCACATCAGTGGAAATTTTCATATATGAAACATAACCACCATTGCTTCCTTTAGAGCGTTGGAAGCTCCCGGTT TGATCAAAATGAAAGCATCTACCAGTGCTGTTTTCATAGAACAGCACCAGGCAAGAACAATTTCCTAAACAAGCATCTTT GCAAGAATTCAAGGTTGATTTTGAAACTGGTGCAACATACTTAAGTGCAAAATAATCAAGCTTTTCACCAACATACACAA GTTCTGTACTTGAAGGTCTTCTGGAACATGTTGTGATGTTTGGAGGTTTGCAATTGAACCGCGACTTGAGAAGTGCAGGG CATTCACACCAATTCTCAAAGAAGCAAACATTGTAAGGATCACAAGGCTCAGGAATGCCACAAGGGTCATGTGGTATCTT AAATTGCTCAGGGTTAGTGGATTTCCCCTTGTTAAGATCATAGAAAGAGATTGCACCATTGGGGTCCAAAATAGCCACCC AAAATGACTTAGGATCTGAATGATCAGAGAAGACAAGTTTCCACAGCAAAACACCACTTTTATCATGAAAATTCCATGAA TTGGAGACCAGAGAAGCTGAGTGAACCTTGCCAGTGACATTTTTTGGAGCTTCCCCTGATAAGGACCAATACGTTTGTGG CGGTTCAAACCCAGCAAACAGAACCAAATCACCTGCTACAAAACCAAGATAATGAAACAAGTTCAATCTGTTGGGGAAGC TTTTCAGTTTCATTCCTTCCACCAACACTTGACCAGGCAAAAGGGTATCAGTAGGGTGGCTAAAACTCTGCCAAACAATT CTATCATCATCTCCAACCAACACCAAATTCCCCGAGTCCTGTAACTCCATGGCTTTCACATTTTGTCCTGTGGTGTTTGT CACCCAAACAACACCATTCCCACTTTGCAAATATGCATTTCCACTATGTTCAAACACAAACTTATCAGAATTTCTAACAA GTAAACCTCTGTCTGCTGTCCAAACCACCTTGTAGCTACTCAAGTGAATGACTACTAGAACAAACAATGAAACATCCAAG GTACCGAAAAACCCGAAAGCGAAAGCTGAGCTGTTGGATAGCAAGAAGAACCCACCATGGTCCTTCCAATCTAGCTGAGA TGCACTGAAGCCAGGATATATCTGGTGAATGTGTTGATCCTTGTTGGCATGGCAGGTTCTGAATAGAAGAAGGAGCATGT AGAAAAACAAGGTCCCACATCTGAATCTGAACAAGCCCATCATTTGATAACTGCATTAAAATATTGGGTTTTAGCT
CDS sequence (LotjaGi3g1v0008900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACTAAGAAGTTTAAGTTCACCAATTCCAAGTTCACTGCTGCCAAATTTCAAAGAATTTTCCCCTGAGCCTGAGAA GAAAAATTGCATATCATGTAGTAGTGGGATGGGGAAAGAAAGCGATGGGGTGGAAGAATCAAAACAAAGAATTCACAACA AAGTTAGAAAGTTGCAAACTTTAACAATGGGTAGTGGGATGGGCAGTGATGGTGGCAGTGATGGTGGCAGTGATGGTGGC AGAGCTTGTGGCGGTGGTGGAAGAGGCTCAGATGATGATGGAACACATGCTTATTACCAGAACATGATTGAAGCAAACCC CAACAATGCTCTTTTCCTAGGAAATTATGCTAAGTTTTTGAAGGAGGTTTGTGGAGATTACCCTAAAGCAGAGGAGTATC TTGAAAGAGCCATTTTGGCTAATCCTGGTGATGCTAATGTTTTATCCCTCTATGCGAATTTGATATGGCAAAAAGAGAAG AATGCTGATAGAGCTGAAGGCTATTTTGATCGAGCTGTTAAAAGTGCCCCGGATGATTGCTATGTCCTGGCTTCTTATGC CAAATTCCTCTGGGATATTGAAGATGAAGACAAAGACAGCCACCATAAAACTGATCAAAGCTACACATATCCATCTGACC TCTTTCAAGGAACTTATGGCCGCCCACATGCTACTGCAGGTCAATTCTGGGAAATATAA
Protein sequence (LotjaGi3g1v0008900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLRSLSSPIPSSLLPNFKEFSPEPEKKNCISCSSGMGKESDGVEESKQRIHNKVRKLQTLTMGSGMGSDGGSDGGSDGG RACGGGGRGSDDDGTHAYYQNMIEANPNNALFLGNYAKFLKEVCGDYPKAEEYLERAILANPGDANVLSLYANLIWQKEK NADRAEGYFDRAVKSAPDDCYVLASYAKFLWDIEDEDKDSHHKTDQSYTYPSDLFQGTYGRPHATAGQFWEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 24 | 218 | 195 | 7.4E-75 | – | |
| PANTHER | 24 | 218 | 195 | 7.4E-75 | – | |
| MobiDBLite | 62 | 89 | 28 | - | – | |
| Gene3D | 88 | 201 | 114 | 1.4E-15 | ||
| Pfam | 96 | 154 | 59 | 9.1E-7 | – | |
| SUPERFAMILY | 97 | 197 | 101 | 6.53E-14 | ||
| ProSiteProfiles | 98 | 179 | 82 | 11.619 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0008900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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