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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0009300 |
| Transcript ID | LotjaGi3g1v0009300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT1G15360.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9XI33|WIN1_ARATH Ethylene-responsive transcription factor WIN1; TrEMBL-Plants: tr|A0A151SH21|A0A151SH21_CAJCA Ethylene-responsive transcription factor WIN1; Found in the gene: LotjaGi3g1v0009300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1061015..1062514) extracted from Lotus japonicus Gifu genome v1.2.
CACACATTAACTTACAAATTCCAAACATCTATCTCTCTATCCCCCCTCCTCTCTTTCTCTCTCCCTCTCTCTCACACACA CACTTAGAAAGAGAAGATAGTTTTGACAAACATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCT CTTGGGTTTCAGAGATTCGTCATCCATTATTGTATTTACATCAAACTAACTGAGACTTTCATTTATTTGTTTCTTTTCCT TCTCTAGATACTTCAGATATTTCTTAGATTTTGATATGTTGCTTGAGTTATTTGTTGTATCTTAATTTAACATAAGAGTT TCTTGAGTCAATTTCAAGCATCCTAGAACTTTGTTTCGAGTTAACTAGTTTGTTTTGATGGAATAACATGTCAACATGAT TTATAGCATGCTTGCGTCGGTCTCTTTTTTCTCAGAATCAATTCTGAAACGTAGAACCTACTCCTCCAAGTTTCTTCCCG AAATTGACTCTTTAGAATCAATTTTAAAAGGATTTACACACATGCACTTAATAGCATGTTATGACCAGTTTCTATTTCCT CATTATCAATTCTGGCTCTGGAAAGCTAATCACATAAGCTCCTTCCCAAAATTGGTTTTGCTTTTAGAATCAATTGTAGA AAGATTTCCAAAGTATATTGAATGTGAAAAACTGAAAAATCTTGGTTGTGGTTTATGGTGTTTGAACAGGAAAAGGAGGG TGTGGCTGGGAACATTTGATACTGCTGAAGAAGCAGCTAGAGCATATGACGAGGCAGCAATTTTGATGAGTGGAAGAAAC GCCAAAACTAACTTCCCAGTTGTGGATGATCAAATGGGAAATTCTACTTCTGCTTCATTTTCCACAACATTTTCTACAGT TCTCAGTGCAAAGCTGAGGAAGTGCTTCAAGTCCCCTTCACCTTCCCTCACATGCCTAAGGCTTGATGCAGAGAATTCCC ACTTCGGCGTGTGGCAGAAGCAAGCCGGGCCTCGCTCCGAATCAAACTGGATCATGATGGTTGAGTTAGAAAGGAAGAAC AAGAATGATCACAGAGCTTCTTCTGATTCAGAATTGCCAGAGAAGAATAAGCAAGAGAAGGTAATAAAACCAGAAGAAAG TACTAACAACAATGGCATGGATGAGGAGCAGAGGATTGCACTGCAGATGATAGAAGAACTTCTGAACAGGAATTGAAGAA TTAAACTCAATTTAATGCTTTCATTATCACGTGGGGCTCATTGAAGGAATTTGGAGTCCTATGTAGCTCTTTTCATGGGT TTTATTTGTTTGTTTGTCCTAAGTAGGAGTGTGCTGCATTTATTATATGATCATGAGTGCCTATGATTGTGTACCACATG TGTGGTAAATTTTTATGTACTACTCTATGAAAACTATCCAGCTAACTAATTTGGAACCACTCAAAGTTCTATCCCATGTA TAAATTCTTCTCATGATTACAATGCTGAGAAAAATTATAAATAAACTGATTTTGGTTTTA
CDS sequence (LotjaGi3g1v0009300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCTTGGGTTTCAGAGATTCGTCATCCATTATT GAAAAGGAGGGTGTGGCTGGGAACATTTGATACTGCTGAAGAAGCAGCTAGAGCATATGACGAGGCAGCAATTTTGATGA GTGGAAGAAACGCCAAAACTAACTTCCCAGTTGTGGATGATCAAATGGGAAATTCTACTTCTGCTTCATTTTCCACAACA TTTTCTACAGTTCTCAGTGCAAAGCTGAGGAAGTGCTTCAAGTCCCCTTCACCTTCCCTCACATGCCTAAGGCTTGATGC AGAGAATTCCCACTTCGGCGTGTGGCAGAAGCAAGCCGGGCCTCGCTCCGAATCAAACTGGATCATGATGGTTGAGTTAG AAAGGAAGAACAAGAATGATCACAGAGCTTCTTCTGATTCAGAATTGCCAGAGAAGAATAAGCAAGAGAAGGTAATAAAA CCAGAAGAAAGTACTAACAACAATGGCATGGATGAGGAGCAGAGGATTGCACTGCAGATGATAGAAGAACTTCTGAACAG GAATTGA
Protein sequence (LotjaGi3g1v0009300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKTNFPVVDDQMGNSTSASFSTT FSTVLSAKLRKCFKSPSPSLTCLRLDAENSHFGVWQKQAGPRSESNWIMMVELERKNKNDHRASSDSELPEKNKQEKVIK PEESTNNNGMDEEQRIALQMIEELLNRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 188 | 187 | 1.6E-88 | – | |
| PIRSF | 2 | 114 | 113 | 7.2E-27 | ||
| PANTHER | 2 | 188 | 187 | 1.6E-88 | – | |
| CDD | 5 | 65 | 61 | 1.66801E-36 | ||
| Gene3D | 5 | 65 | 61 | 1.9E-30 | ||
| SUPERFAMILY | 6 | 64 | 59 | 7.85E-21 | ||
| ProSiteProfiles | 6 | 63 | 58 | 22.023 | ||
| SMART | 6 | 69 | 64 | 8.0E-40 | ||
| Pfam | 6 | 53 | 48 | 9.5E-13 | ||
| PRINTS | 7 | 18 | 12 | 8.0E-11 | ||
| PRINTS | 29 | 45 | 17 | 8.0E-11 | ||
| PIRSF | 130 | 160 | 31 | 510.0 | ||
| MobiDBLite | 137 | 169 | 33 | - | – | |
| MobiDBLite | 137 | 175 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0009300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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