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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0009600 |
| Transcript ID | LotjaGi3g1v0009600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT5G17200.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|G7IUV8|G7IUV8_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi3g1v0009600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1072855..1078017) extracted from Lotus japonicus Gifu genome v1.2.
TAAGCTAATACCTTCATGACCATGAAAACGTAAGTTTGGTTTATTTTTTATCAATAAAGAAAAGCCAATTTAACGTCTAT AGTCTGCTTCCTAATACATTGCATGCTCCTATATAGTGGTCCTTATATATAGAAGCAGATATTGGGGTACACAAGATAGC TAGACATTGGTTGAGGGTGTGAAACAGTGAAATGTTGTTCAAGAGCACTCCCATGTTTGATATCATGGTTAGAATCTACT CTCATTTCATCATTTTAACATCATTATGTGGATGTTTGGTTTTCTGTTGATACCAACGGAACGCCAATGAAGCTCATTTC ATCCTTTCACGTTGGGCACTCCGTAATGTGCAATTTCAGTTTTCAATGCACTAAATGTGGTTTTCAACATTAAACTAAAC ATGCACATAGTTGTTAGCTATTAAAGTTGTTTGAATGCGCACTAATGTTGATCAAGAGTTCGTTTGGATGCGGACCAAAG AACATTTATTGGAGTTTATTCAATGCTTTTTTTTAGATAAGCTCCAACAAATGTTCTTTATTTTGTATCCAAATGAGATT TAAGTGTGATTATTTTATAAGTCAAGACTTACTATATAAATTGTTGATTTCATGCAGAAGCTCCTTTTCTCTGTTTTAAT GGTTCTGAGTATGCTCACTCCCGGATTGAGCAGCACTACAACTTTCAATGTTTTGAAATATGGAGCAGTTGGAGATGGAA AAACCAACGATTCCCCTGTAAATTAATTTTCATCTCTCACCCTTTTATCTGCCTCAAATGCTTGTGCTGCTTATGTAACA TTAGTCCAAATGCATTTATGGTGTGTTTAGATAAACAACTTAAGTAAGCCGTTATGGCAATAGGCTCTTATCACATAAAC GCTTATTTATAAGCTTATCTGAGAAGTTTATTGAAATAAACTCAAAATAGTTTATTAACGTAAATGCACATTGAACAGGC CTTTCTGAAGGCGTGGACAGATGTTTGCCAAAGCAACTCAGATGTATCTCAGCTCATAATACCAGCCGCAAGGACATTCT TGCTGAAACCAATAACCTTCGCTGGTCCATGCAAATCTAAATATATCCTCATTCAGGTACCTTCCTCTCATGATTTGTTA TGAATGAACAAGTAATGTCAAACCTTGATGTTGTTATGAGTTAGTGAGATTTTTTACCTTCCAGTCTAAAAGGAGGATAA TAAGTTCATTGAAAGTATAAATAGATAACCAACATGTGGTTGATTTAAGTAATATACAACTATACATGTTTGATTTCCCT AAAGTAATGTCTCGGATTCAAGTTTTCTAAAGAGAAAAAACTCCAGCTGATAGAGCTAATCTTACCAATATGTGGATGTT TCTCGCTTTGTCTTATCCCGAAATACCTGCATTTATACCAAAAGTATAAATAGATTAAGTTAATGCCAAAATTGACTTAA AAAGGAGAAATATTCCACAAATTAAAATAGCCACTGATTAATATTTCAAGGGATTGATTCTATTTATATTAACATGATTA TCTACTTTATGTGACCTCAGCTTTCAGGGAACATTGTTGCACCTACAAAATCAGGATTTTCTGGATCTCACCTAAACACA TGGCTTGGCTTCAAATCCATCAATGGTTTAGCTATCAGTGGAAAAGGGACAATTGATGGTCAAGGCTCTGCCTGGTGGAA GCAACCTTGCTTAGGAAATCCAATACCTGTAAGTAAATTTGTTTTATTTTTCTTACACAGTGTAACATGTTAGTTTATTA AATGAGCTCATCATTCAAACATACCATTTACAAGCACCTGCTAAATGGTGTGTCGGAAAGGTGTCGCAGTATTTCATATG CCCATCAATCATTTTCGCCTATCAATTAAGCTTTTCTATATTTTTACAATATTTGCCTAATTCTTATGCATTGTTTGTTT TCAGGGTACAGAGTGCCGTCCACCAACAGTAAGTATCGGCTCTTCTCCATATATTGACAATCTGTTACCAAATTAAATAC CACTTTTCATGATTTCTTGGTACATATATGCAATAGACACTTGAAGTACTTGGACTTTAAAGAAAAAGAGAAAGGGCAAG AATCATGAATCTAAAGACAGATGTGCTTCAATTCATCCAGAGGAAAATGATGATTATTGTTGAAGCTTTTGCATAATTAC AAGTTTAAGTTATTAACACTTTTGTTTGCAGTTTGCACGTTTTCTTGCACTTAAACCTCGCGACTTTTTCTGCATAAAGA TTAATGCAAATCTTCCACTCTAAAAAGTGTGTGCAACTTTCATTTCTCTCAAGTTAGAAAGAAATTGTGTGTGTTTGTAT TTACATTTAAGTTGGTCAAAAGCATATTCACTCTAATGACACAAGAGACATGAATTGGCCAAAAGTACATTCAAAATGCC TAGGAATGTGCGCCGAGAGAAATACAAACACTCAAGTTCAAACCAAAGTTTTTTATCTCGAAAAGTCCAATAGTGCATCC CTTTGCAAACATCAAAATTGATTCTCTAGTGTCAAAATCAGATTTTAGTTGTTTAGTATTTTCTTCCACAATTGATTTTA GCTCTAAAATGAAGCTACAAAATTTAGCTTTTGTGGTGGATATATTCAACTCTGAGATTTCAGAGCTGGATTTCATAATA TAAACCTATATAAATCATTTTCCCCATAAATGTATCCAAAATAAAATCACTCCAATTTCAATTCATTTTTACTATAATGA ATTTTATCTGTGCATTCTACTCTCTAACAAGTTTACATACTTCAGACTAATTAACTAAAGCATATGTACAACTTGCCCTG CTTTCTCAAATATTCCTACCAGTCAGATTCAATCACATAAAATGGATGAACATCAACAATAAATACAAATTAAAAGCACC ATGTCAAAGAAAACTAATTGAATTATAAATATTTTTGACCATGTCTGTGAATACTGTACAGGCATTAACATTCAATAGAT GCTATCGCCTTCAGCTCAAAGGATTTACAAGCATTAATCCCCCAAGAAGCCATATAACTCTAACAAGCTGCAAGAAGGCC ATTATCAAAAACCTCCATTTAATTGCTCCTGGAGAAAGCCCTAATACTGATGGCATTGATATTTCTGGCTCAAGGGACAT TCAAGTGCTTAATTCTTTCATTGGAACAGGTGATTAACTTCAAATTTGCAAGCTCCACTCTAAAGTTATAGTGAAGTCTT TCAATGTTTCTTATTCTCTGACTTAATTATCTGAATAACAAAAAAAAATTGTTTCTGTCTAATAAACTGTAGGTGATGAT TGCATTGCTGTTAGTGCTGGATCATCCCTAATCAAAATAACTGGTATAACATGTGGTCCAGGCCATGGTATCAGGTTGGT ACTTCAATAATTATGTATTGGATTAACACCCACTTTTTTCTATCTGGTTTCAACTAATCATACATAGTGTGTTTGAAAAC TTGGTAGATTTCCATGTTTGGGTAGAAATGACTCTGAACCCATTTGGAAACCAATCAAAAGATCTGAAAACGAAAAAAAA ATAACACATTTTGAGGTACTTCTTGTACAAAAAGTTTCTCAAGATGTTATTTTTCCATTTTCATACTTTTTGATTGATAT TCAAAGGGGCACTTTGTATGAAATTACTAAGAATAGCTGAGATTTAAGTGGACACAAGCAGGCTGATCATAAGTATTCAA AGGGACTCACATATTTAATACACCGGAAAAGGTTATTGGACCAACACACACTTTAGAGGCAGCTTCCAACCGCTGCCTTT GAAAACTGTCGCTGTGTTAGATGAATGTCGTGTGAACGTTATATGTTTATGTATTATTACTCTTAATACAAATGAAGAGA ACTATAGACACAAAATTATAACATAAAACATAAGGATGTTTCCATATGAGAGAATCCTGATGTGGCACATAGTTTTCTGA TGAAAGGAATCATATTTTTGTAGCATTGGATCATTGGGAGGAAGTGGAGAGTTCGACACTGTAGAGGACGTGCATGTGAA GAATTGTACACTGACTGAAACATTAACAGGAGTAAGGATCAAGACAATAAAGGTAATTGAGCAAATTTGGATTGTGTAAA TTTGGATCATTGGTTTAACTTGTGTTTTTTTGTTACATAAGTTGTGTAAATTTGAATTGTATTTTGCAACAGGGTGGAGG TGGATTTGCAAGGAGGATCTCATTTGAAGGGATCAGATTTGTTCGAGCCAATAATCCCATTATCATTGATCAGTATTACT GCGTCAATGGAATGAAGTGTGAAACCAAGGTAACAACAAAAGATAACTTAGAGTACCAATTTGGCCATGTTGTTGTCTAG TGTCCACCACATGTTCGGGTGGTGGACGTAAACACGGCTATCAAATTGCTATGAATTAGTAGCGAGAATAGCAAATTCAC AGCTATTTGATAGCTGATTTTCGAGCAACTAATCCTCGAGCATGAGAAAGGCTTTGGCCATTAAATTTTTTACACATAAA TTTTACAACTTTGAGTAACAGTTTTTATGTTAATATTTTTCTTCACTTGTTATGAGTTAGGATCAAGCGATCAAGGTGAG TGATGTAACTTTCAGAGGAATTACTGGAACATCATTGATGGACAAGGTGATCAATTTGAACTGTGACCAGAATGTGGGGT GCTCCAACATTGTGTTTGAAAAAGTTTATATAGCATCTGCAGTTCCTGGGATGAAGGTTTTCTCTTTCTGCCACAATGCC CATGGAACAGCTTCCCACGTCAAACCATCTTTAAATTGCTTGCTCAAGTAGCTCAATTCCCAATTCAGGGACAAGTATTG AAGAACACTTCAACTTTTATTGATTTGTTGTCTTCAGAGCTGCCATATTTACTAGTTGGGCAGGGACACCCTTCAGACAT ATTATTTGCAACGGTTTTTAACCGCCAGAAAGTAACTGAAATTATATGATTATCCATCATTACCTTTTTTCCCAACCTTT TTTTCCCTGGAATAAGCTTGTTAGATTGGTTATTGACTTCATGTGTGATTATTGAATAAGTATGTGTTTGCCTATCCATT TGTATCCATCTGTATCATTGTAAATGGATGTTTACAAGCACTTTGAAAACCAGAAATTTCATTTTTCATAATGGAAAAGT TTGTTCACTTTACATTTACACTCGTATTCAAAGATACACTAAC
CDS sequence (LotjaGi3g1v0009600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTCAAGAGCACTCCCATGTTTGATATCATGAAGCTCCTTTTCTCTGTTTTAATGGTTCTGAGTATGCTCACTCC CGGATTGAGCAGCACTACAACTTTCAATGTTTTGAAATATGGAGCAGTTGGAGATGGAAAAACCAACGATTCCCCTGCCT TTCTGAAGGCGTGGACAGATGTTTGCCAAAGCAACTCAGATGTATCTCAGCTCATAATACCAGCCGCAAGGACATTCTTG CTGAAACCAATAACCTTCGCTGGTCCATGCAAATCTAAATATATCCTCATTCAGCTTTCAGGGAACATTGTTGCACCTAC AAAATCAGGATTTTCTGGATCTCACCTAAACACATGGCTTGGCTTCAAATCCATCAATGGTTTAGCTATCAGTGGAAAAG GGACAATTGATGGTCAAGGCTCTGCCTGGTGGAAGCAACCTTGCTTAGGAAATCCAATACCTGGTACAGAGTGCCGTCCA CCAACAGCATTAACATTCAATAGATGCTATCGCCTTCAGCTCAAAGGATTTACAAGCATTAATCCCCCAAGAAGCCATAT AACTCTAACAAGCTGCAAGAAGGCCATTATCAAAAACCTCCATTTAATTGCTCCTGGAGAAAGCCCTAATACTGATGGCA TTGATATTTCTGGCTCAAGGGACATTCAAGTGCTTAATTCTTTCATTGGAACAGGTGATGATTGCATTGCTGTTAGTGCT GGATCATCCCTAATCAAAATAACTGGTATAACATGTGGTCCAGGCCATGGTATCAGCATTGGATCATTGGGAGGAAGTGG AGAGTTCGACACTGTAGAGGACGTGCATGTGAAGAATTGTACACTGACTGAAACATTAACAGGAGTAAGGATCAAGACAA TAAAGGGTGGAGGTGGATTTGCAAGGAGGATCTCATTTGAAGGGATCAGATTTGTTCGAGCCAATAATCCCATTATCATT GATCAGTATTACTGCGTCAATGGAATGAAGTGTGAAACCAAGGATCAAGCGATCAAGGTGAGTGATGTAACTTTCAGAGG AATTACTGGAACATCATTGATGGACAAGGTGATCAATTTGAACTGTGACCAGAATGTGGGGTGCTCCAACATTGTGTTTG AAAAAGTTTATATAGCATCTGCAGTTCCTGGGATGAAGGTTTTCTCTTTCTGCCACAATGCCCATGGAACAGCTTCCCAC GTCAAACCATCTTTAAATTGCTTGCTCAAGTAG
Protein sequence (LotjaGi3g1v0009600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFKSTPMFDIMKLLFSVLMVLSMLTPGLSSTTTFNVLKYGAVGDGKTNDSPAFLKAWTDVCQSNSDVSQLIIPAARTFL LKPITFAGPCKSKYILIQLSGNIVAPTKSGFSGSHLNTWLGFKSINGLAISGKGTIDGQGSAWWKQPCLGNPIPGTECRP PTALTFNRCYRLQLKGFTSINPPRSHITLTSCKKAIIKNLHLIAPGESPNTDGIDISGSRDIQVLNSFIGTGDDCIAVSA GSSLIKITGITCGPGHGISIGSLGGSGEFDTVEDVHVKNCTLTETLTGVRIKTIKGGGGFARRISFEGIRFVRANNPIII DQYYCVNGMKCETKDQAIKVSDVTFRGITGTSLMDKVINLNCDQNVGCSNIVFEKVYIASAVPGMKVFSFCHNAHGTASH VKPSLNCLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| SUPERFAMILY | 21 | 408 | 388 | 9.32E-109 | ||
| Gene3D | 26 | 407 | 382 | 3.0E-116 | ||
| PANTHER | 26 | 409 | 384 | 7.5E-165 | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| PANTHER | 26 | 409 | 384 | 7.5E-165 | – | |
| Phobius | 31 | 410 | 380 | - | – | |
| Pfam | 65 | 397 | 333 | 3.1E-85 | ||
| SMART | 192 | 218 | 27 | 910.0 | ||
| SMART | 219 | 240 | 22 | 760.0 | ||
| ProSitePatterns | 249 | 262 | 14 | - | ||
| SMART | 272 | 293 | 22 | 61.0 | ||
| SMART | 301 | 322 | 22 | 5600.0 | ||
| SMART | 368 | 389 | 22 | 9300.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0009600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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