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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0012600 |
| Transcript ID | LotjaGi3g1v0012600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bromo-adjacent-like (BAH) domain protein; TAIR: AT3G15605.4 nucleic acid binding protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|K7M3X0|K7M3X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1351390..1358128) extracted from Lotus japonicus Gifu genome v1.2.
GGGGCACCAAACTCAATTCCCCCTTTTCACTCATGCCTTGCATGCTTCTTTTGCTGTACGGACACGGTAAGCAGAATTGA ATCGTTTTCTTCCCATTTTCCCTCTTGATTCCTTCTTCCCTATTCAACAACAACATGCTTTTGCTTCTGATGCTGTGTTT TCCTTCTCTTCTTCAACATTGTTCTTGAACTGAACTGACCTCTGTTTTTACTCTGTTTCTACAATGCTATTATCACATTC ATAGGCATTAGTACTAGTAGTGTTGTTCCCCAGCTGAAAGGAACCATTTTTCTGATTCTTTCCCTTGTTTTGATCAACCC CTTTTGTTTTTTCTTGCTGTGTTGGTCAGGCACGAACGAACCCCACTCACTCCCACGTTCTAACCCCATTTTCTATTTTT TCCTATTTTTCTGCATTCAAAGGGTTTTTTTTTTTTTTTTGAAATCAAGGTGGTACCTTTGTTGCATGTTTACAACTAGT GCTTCATCATTGTTAGTTCCATTGATTGTTCTGTTCATGATGAATTTATTGTTCTAATTTTTTCATTAATGGGTTGTTGT TTCCTAGGTTGCTGTAATAATATATTGCATCTTGTACTTCACTGTTTGTTTAGTCTTCTTTGTTCTTTATTTTTGGTGGT AATGCTGTGTATTTATTTGATGATTTAATATTGTCTCAGGTGTTATCTGTGTTGGCATTTGTGACTAGAAGAACATATAA TAGGCAATGTCACTGCAATCTGAACAAAGTGGTGGTGATTTGAAGGATTTTAAGTGGGGTCGTAAGAGGGGAGTTGGTGT GAAAAATAAAGCCATCCAGTTTTATGAGTCATTTGTTTATGAGGGTGTGAAGTACTCTCTTTATGATTGTGCTTATTTCT ACGACGCTCGTCATGTAGAAACTTCTATAGGTAAGCTTGTGAGGATGTATGAGGGGCCAAGTCATAATAAGATGGTGAAA GTTGTCTGGTTTCTTCGTCCTGGTGAAATTCGCAATTTCATGGGGCATTATCGGCCAAGTTGGGATGAGTTATTCTTGGC ATCTGGTGTGGGCAAAGGTGTTTCCAATCTCAATTATCTGGTAATTTCATTAATTTAGTTGTATGAATTCATTAAAGATT TGAGTACTTGTACTGTACTGTACTGTGTAATGATAATTTGGAGATGAAATTGTTGTTAAATTCGGGGTTTAAGGGGTCTG AATAATTATGATCATGACTGACTGGATACAGTGAGAGAACTATCTTTGGAGGTAATATATATTAGCTTATTTTGGTCTGA TCAGAATGATTCTTATGCAACCCATTGGCACTAGCTGAAATGGTCATTCTGCGAATGACTTCATTGTTTGTAACTTATAT TCATCTCCAAAACATGCTAAAAAATCTTTTATGACATGGGGAACTAGCACTCATTTTGAGGCAAAAAATGAACAAGACTC TTGTTATGAATTAGGATGAAATACTTTGTCATTTTTTTGAAGTTAAAAATGTTGTCTTCAGGGAGCAATTATTGGAAAAT GCAATGTTGTTTGCACTTCAAAGGACAGGAGAAACCCTGAACCATCTGATACTGATTTAAAGAAGGCAGACTACTTTTTC GATCACACTTTTGATGTTGGAAAGCTTGAACTTGTTGATAAATTTGCTGATAAGATTGATGGAATTGAAGGTCAGTTCAT GTCTCTTAACCTGCAATCTTCATTAATTAGACTCTACACACCACATGTAGAAACTACTTTTTCAGTTACTGGATTATTTT TTATGTTCCCAGGTAATTAGTTCACGTGTTACTGTTTTTGCAGTGGAGCATTTCTTCAATAGGAAGGGAGATAATGAAAT CAGAAATGATCTGCATGTTGGGACAAATCCAAGAAAAATTGTGACAAAGACTAGGACTGACCCTTCTGATATCTTGCCCT ATCGAGTTAAAGATAAAGCTGAAGCAATGCCTCCTAATATTGTCTTGCCAGAGAAATCGTCGAATTCTTTTCCATTTAAA AAGAGGAAGATTGAAGAAGAGAAGCCAGCCATTAGTCCAAGTAGCAAGTCCCCTAAGGAAGAGGAGTTCATTGAGAAGGA GGCTGAACTCATACAGGATAAAACAGACGAAACATGCAGCAAAGCCATTGAGGTGACTGAAAGGCCGGGTGCAGTAAGTA TCTGAAAACCCATGATGGTTATCATAGTTTAATTGCTCTTTTAAAATACTAATCCTAGATGGGGGGAGTGCATCAGAAAC AGAAACACCATAACTTATCTGCTTGTTAGGTGTGTTGAGACTTGAGAATTTAACCATGCACATAATATAGAAATATGAAA GGTTCATCATCATTATATATATCTTATATCAAAGTTTTCTTTTTACCCAAACTTGATCTGAATGCGATGATTTGAGTCCT CCATCACACACTCCTTAAATGTAGAATACCCCTTCTTCACTGGATATTCACAATGTGTAACTGGGGAACCTAATTTCTGA AGCAATGTGAAATGATTGAGAATCTTGGTGGTAGCAAAAACAAATATTCACAATCTGTAACTTGTAGATGTGGTTTCATA TATGACTTCAGTCACTGTTCTGATCGGCCAACCCCCATTTTCTTCATTTCAGGAAAGAAGAAAGTGGTTTAAGAAAATGG TGAGTTTTTTTTCTTTCTTTATACTTATTGTGGATTCTTGATTTGATTTTGATCATTTTTCATTTCTGGATGGTAGTGAA TGGAGCTGCTGTCTGTGCTTAAAAATAATATGTAAATAGTGTTTACATTGAAGGTTCTGTACTCTCTCGGAACTTCTGCA TTACACTCTAGGATCTAAACTTGTTTGCATCATCTCCATTTCTTGATCTAGTATCGATAACTACAAACAGGTTTTCTTAT CTTTTTAGTTTCAATAACTTTTTCCATCATGTGTACTATTGAATTATTCCATTTTTAATGATTGAAGTACTGGAGTGGAG TTATAGTAGCAGACTATGCTTGTCTTTTCTTATATTATCTGTATTTTTCTGATGTAAAAAGCACTCATTTTCTAAGCTCT TACATCAAATAATTTTAGGGTATGACTATGAGATAAATTAGCTGCCAAGTACTAGTTATTTTTTTGAAAGTTGCTTCTTT TACCCGCAAAAGAGATTTTTTTAAAGAATAGAATTTTGCTTGAAACTATAAGGCTGCTTGCTAGTCTAGAATTTCATGTG TGTGTGTGTGTGTGTGCATTAGCTAAGAGAAATTTGTTTCCCATGTAAAATGCTTTGTATAATTGTGTGGTTGCTGTCTT TTAAGTCTCATTCAGACCATAGACTATTCTTCATTTTACGTCTTTATTTTTTCAATAAAAATATTAAATAACATCCTTTT AAAGTCAATTGTAAATGTCGCACCAACAATTACATATGACTACTTTTAAATGTTTTTAATTTTCTTTTGGCATGTTTAGA ATACATGAAACTGGCCTAGATTGGTTTAAGAAAAGTGATGTTAACCTCATTTGGATTTTAAAATTAATAAACATTAATTT TCTAGATTTTCGAAACGTGATCAAACATTTTTTTATTTTACAAAAGAAGTGTGTTTTATAACAGAAAATAATGAATGTAT TGAAGTTTTTTGTTCTTCGATCCTTGTAAAGATTCCCACTCTTTCCTCTGCTTCCAACCATATTTGCTTAAAGAAGATTA TTTATAATACATGTTAAAAAGGATTGAGAGAGTAAATGCAAGTTATATACTTCTATGAATCATAAGGATATAGTGTAAAA TGATTGTTTTCACAATGATTTGGTTTGTAGCCTTGGGAAGAAAGACTACAGAGAGCTGAAGAGTTAGATACCCTGGTTTT ACTGGATAATCTGGATCCATCATTTACTTCATCTGAAGTTGAGGTATATAAAATGCAACTTTTCAAAACCTTTTCTTGTT GTTTGTTCATCTTCCATACAATAGAGCTTGTTTAATGTACCTTAGTGTTAAGATGATGATATAATAAGCTAATTTTGTAC TGCTCATTGAACTTTTAAAGATTAGGACCACTGTGATTATGGCCAACTTTATGGAAATTTCATCATCAGCACAGACTTAA TATGGATATTTGTAGATCTGTTATACTTACTACTGAAAAGTGTTGTGAAACAAGTTTTTTTCCCTCTCCTAGTACGAGAT TTGGGTCTTTGTGTGTAGTGGTCTTGATTCTTAAAAAAATTCCTTCAATTCTTGTTCAGGATCTTGTCTGGCATGCTTTC CAAGAGAAAGTTGAGGCAAGGATGATAGAACAGAGCCCGAGTTCCAATCCATATTATGGTATTTACCGTTTGATCTTTAT AACTGGAAAACAATCTCTTGTTTCATTTTATTGTCGATCTTTCATTTGTATCTGGGACGGATGCAAGTGTTGAGGCATTT ATGGACATTTGGTAAAAAATGCCCTCACTTGTGTCTCACATTGCTAAATGCCCTCACTTGTGTCCCACATTGCTATGTGC CCTCACTTGAGTAGTAAAAGTATGTGGTTTTTTATGCTCATTTAGTAAAAAGTGCTCTCACTTGTGTCACGTTTGATAAA AAATGTCCTCACTTCTAATAGTATATGTTAATTTTTTTTATTACAAATTTATATTTATATATTGCCCTCACAACATTAAA TTTCTGGATCCGTCACTGATTTGTATGATGAGAAATATCAAATTCACTGGTACATATCAAGGATGTTGTGTTTTTTAGAC CAATTGATTTTGTTTCCTCAAATGCTGACAGGTAGAGCATTGGTAATTTTCAAAACAAAAGATGCAGCTAAATCTGCAAT ATTTGAGTTGAATAAGAGATGCCTTGTTCTCGGAGAAGGGAGGTATTTCATTTGTGGCTTTGTTCTTCATGTTGAAGTTA TTGTTGAATGCAAAAGAATTAAGCTGAATGGCTTTAATATTCTTTAGTGCTTTTATCATTATTTTCATTTCAGAGTACTG AAGTTATCAGAGCAGTTAAATAAACCAAAGGAGGATGGCTTAATTAGCAGGAAAGGCGGTTAGAACTTAGAAGTAGTTAA GGGTTAGAGAGTTAGTTAGCAAAAGGGGGAATTATGTAGTGTTGTTAGTGGTAAATTTTTAGCTTCTGTGTACTCATCTT CACTTTGTATATATTGTGAAACTCTTGTATATTTATTCAGTTGAATCAGATCAGATCAAATGTTTGATTTCTCTCAAATG CTGGTTAGAGTTTTCTGATCTGAGGAACACAATCTTCTAATTCATTGATATATGGATCGTAGATGCGCAGATGTGTAAGT CACCACAGAATAATGGTTTGAGTTAATATTTCCTCACAATTAGGTTAGATAAATAAAAACAAAAGCAGGGATTCTGCATT GATGCTGCGGGGAAGGATTAACTGATTAAATAATGCAAATCAATGTGCATTCTTCTTTTTCCATTATCATCTGCTATTGT AATGGAAGTATAGATGTCCTTGATAGGAGACAATCGTGTGAGTTAAGTAGGATTACTATAAGCAACAAAACTCTTTCTAT AAGCAATGTATTCATGGCTTAATCTCGAGACTACTAATAAAGCTGGATCATCCTAGCCATATTGGCCGATCCATGCATTA TGAAAATTCTTGCATCCGTCATAGAATGGAAGGGATAACTTTGATATTAAATGGCTCTAATTTTTCTAAAGCATTTTTAA ACTTTACAACACAACATTGTTCTACTTCATACTTACTGCTTGGAAGTTTCCTGCAGGGTTGTCTATGCGGAGAAGGGAAC TCTAACTCTAACAGAGCCTGAACCATGCAAGAAAGGTGAATTCCCTGGCCATGTTGTCCTCGACAGATTTGCGCGTCAAA AGCAACGCCCTGAGATGGTAACCTAACTCACCTAGCTTGATTGATTCATTTTTTACCTTGTATCCCAACATGTTAAAAAA TATGATTTAGGGTGTGTTTGGGTAAACAACTTAATTATGCGCTTATGACAATAAGCTCCTCTCACGTAAGTGCTTATTTA TAAGCTTATTTGAGAAACTTATCAAAATAGTTTATAGGTAAAGGTTTATTCATAAGCTAATATGAGAAACTTATGAAGAT AAACTCAAAACAACTTCAAGTAGGTCATGAACTTACCCAAACATTTATATAAGCGTTTATGCTATGAGATAAGCTTAAAT AAGTTCTTTCTATTGCGGCCTTACGTTATGTGTTGTTTGCATTTGATAGAGAAATGCAGTATCAACATCACATTGTGCCC AGCGCAATACGGTTGAATATCCTTTGGGCATTGAGTGGATGGTGCAATATGAGAAATCTGATGCAGGCTGGAATGCATTA CACCAGGTGGAGCATCTTGAATTTTTTTTTTCTTGTGTTGACATTGCATCACCTACAATCTTGTTTATTGAACTTCTTGT CTAGATGGTTGAAGTTAATCTGTTTTTTTTTTCCTTTCTATTTTACAGGTACAAATGAAGGAGATAGAAGATGCAAAGAG TCAACTTAAAAACAGACAGCATTTTTTCTTGAAAGCCTCCTAGTTAAGTCATTCTTTTTCTAATACCTGACATTTTTGTA TAGAAATCTTACAAAATTGAGAACTTTGATAGAAAAGAAGGATGTCCTGGTTATGTATCCGCAGGTACAGGAAAAATTCA TATCACTGATACTAGTACATTGTATTTTGAACAACTTGGTTGTAGATACATGCAACAGTTTCTTTACTGCAGTCATAGTT GTTAAGATCTCAGGATTCA
CDS sequence (LotjaGi3g1v0012600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTGCAATCTGAACAAAGTGGTGGTGATTTGAAGGATTTTAAGTGGGGTCGTAAGAGGGGAGTTGGTGTGAAAAA TAAAGCCATCCAGTTTTATGAGTCATTTGTTTATGAGGGTGTGAAGTACTCTCTTTATGATTGTGCTTATTTCTACGACG CTCGTCATGTAGAAACTTCTATAGGTAAGCTTGTGAGGATGTATGAGGGGCCAAGTCATAATAAGATGGTGAAAGTTGTC TGGTTTCTTCGTCCTGGTGAAATTCGCAATTTCATGGGGCATTATCGGCCAAGTTGGGATGAGTTATTCTTGGCATCTGG TGTGGGCAAAGGTGTTTCCAATCTCAATTATCTGGGAGCAATTATTGGAAAATGCAATGTTGTTTGCACTTCAAAGGACA GGAGAAACCCTGAACCATCTGATACTGATTTAAAGAAGGCAGACTACTTTTTCGATCACACTTTTGATGTTGGAAAGCTT GAACTTGTTGATAAATTTGCTGATAAGATTGATGGAATTGAAGTGGAGCATTTCTTCAATAGGAAGGGAGATAATGAAAT CAGAAATGATCTGCATGTTGGGACAAATCCAAGAAAAATTGTGACAAAGACTAGGACTGACCCTTCTGATATCTTGCCCT ATCGAGTTAAAGATAAAGCTGAAGCAATGCCTCCTAATATTGTCTTGCCAGAGAAATCGTCGAATTCTTTTCCATTTAAA AAGAGGAAGATTGAAGAAGAGAAGCCAGCCATTAGTCCAAGTAGCAAGTCCCCTAAGGAAGAGGAGTTCATTGAGAAGGA GGCTGAACTCATACAGGATAAAACAGACGAAACATGCAGCAAAGCCATTGAGGTGACTGAAAGGCCGGGTGCAGAAAGAA GAAAGTGGTTTAAGAAAATGCCTTGGGAAGAAAGACTACAGAGAGCTGAAGAGTTAGATACCCTGGTTTTACTGGATAAT CTGGATCCATCATTTACTTCATCTGAAGTTGAGGATCTTGTCTGGCATGCTTTCCAAGAGAAAGTTGAGGCAAGGATGAT AGAACAGAGCCCGAGTTCCAATCCATATTATGGTAGAGCATTGGTAATTTTCAAAACAAAAGATGCAGCTAAATCTGCAA TATTTGAGTTGAATAAGAGATGCCTTGTTCTCGGAGAAGGGAGGGTTGTCTATGCGGAGAAGGGAACTCTAACTCTAACA GAGCCTGAACCATGCAAGAAAGGTGAATTCCCTGGCCATGTTGTCCTCGACAGATTTGCGCGTCAAAAGCAACGCCCTGA GATGAGAAATGCAGTATCAACATCACATTGTGCCCAGCGCAATACGGTTGAATATCCTTTGGGCATTGAGTGGATGGTGC AATATGAGAAATCTGATGCAGGCTGGAATGCATTACACCAGGTACAAATGAAGGAGATAGAAGATGCAAAGAGTCAACTT AAAAACAGACAGCATTTTTTCTTGAAAGCCTCCTAG
Protein sequence (LotjaGi3g1v0012600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLQSEQSGGDLKDFKWGRKRGVGVKNKAIQFYESFVYEGVKYSLYDCAYFYDARHVETSIGKLVRMYEGPSHNKMVKVV WFLRPGEIRNFMGHYRPSWDELFLASGVGKGVSNLNYLGAIIGKCNVVCTSKDRRNPEPSDTDLKKADYFFDHTFDVGKL ELVDKFADKIDGIEVEHFFNRKGDNEIRNDLHVGTNPRKIVTKTRTDPSDILPYRVKDKAEAMPPNIVLPEKSSNSFPFK KRKIEEEKPAISPSSKSPKEEEFIEKEAELIQDKTDETCSKAIEVTERPGAERRKWFKKMPWEERLQRAEELDTLVLLDN LDPSFTSSEVEDLVWHAFQEKVEARMIEQSPSSNPYYGRALVIFKTKDAAKSAIFELNKRCLVLGEGRVVYAEKGTLTLT EPEPCKKGEFPGHVVLDRFARQKQRPEMRNAVSTSHCAQRNTVEYPLGIEWMVQYEKSDAGWNALHQVQMKEIEDAKSQL KNRQHFFLKAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 164 | 154 | 2.4E-26 | ||
| PANTHER | 12 | 194 | 183 | 4.2E-171 | – | |
| ProSiteProfiles | 41 | 166 | 126 | 13.352 | ||
| Pfam | 42 | 137 | 96 | 3.6E-8 | ||
| PANTHER | 232 | 481 | 250 | 4.2E-171 | – | |
| SUPERFAMILY | 305 | 392 | 88 | 1.78E-6 | ||
| ProSiteProfiles | 314 | 397 | 84 | 9.746 | ||
| Coils | 463 | 483 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi3g1v0012600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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