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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF01426
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 62 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.025s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0024609.1
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1| chr0 9801079 9818629 -
2 domain predictions
1 GO term
Lj0g3v0024609.2
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi|502154028|ref|XP_004509555.1| chr0 9801079 9818629 -
2 domain predictions
1 GO term
Lj0g3v0060049.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr0 19959471 19966338 +
2 domain predictions
1 GO term
Lj0g3v0087639.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr0 35678964 35683219 +
2 domain predictions
1 GO term
Lj0g3v0103099.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr0 43947756 43949889 +
2 domain predictions
1 GO term
Lj0g3v0173019.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr0 83166197 83170289 -
2 domain predictions
1 GO term
Lj0g3v0308579.1
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi|502164095|ref|XP_004513047.1| chr0 161125111 161127855 -
2 domain predictions
1 GO term
Lj0g3v0328459.1
n.a. DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1| chr0 171683907 171690450 -
2 domain predictions
1 GO term
Lj1g3v0415250.1
n.a. BAH domain,TFIIS helical bundle-like domain isoform 1 [Theobroma cacao] gi|508773378|gb|EOY20634.1| chr1 5202583 5210505 -
2 domain predictions
1 GO term
Lj1g3v2035300.1
n.a. bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|334187617|ref|NP_196708.5| chr1 23915381 23927407 -
2 domain predictions
1 GO term
Lj1g3v3381180.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356516937|ref|XP_003527148.1| chr1 38711786 38715893 -
2 domain predictions
1 GO term
Lj2g3v1019790.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] gi|502090725|ref|XP_004489321.1| chr2 15772873 15779894 -
2 domain predictions
1 GO term
Lj2g3v1155580.1
n.a. Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein [Medicago truncatula] gi|357488501|ref|XP_003614538.1| chr2 18310896 18314271 +
2 domain predictions
1 GO term
Lj2g3v1646590.1
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi|356540854|ref|XP_003538899.1| chr2 25636629 25641052 +
2 domain predictions
1 GO term
Lj2g3v1646590.2
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Glycine max] gi|356495335|ref|XP_003516534.1| chr2 25636629 25642737 +
2 domain predictions
1 GO term
Lj2g3v2017700.1
n.a. BAH and coiled-coil domain-containing protein [Medicago truncatula] gi|357481593|ref|XP_003611082.1| chr2 30982220 30985904 +
2 domain predictions
1 GO term
Lj2g3v3222880.1
n.a. PHD finger protein [Medicago truncatula] gi|357494725|ref|XP_003617651.1| chr2 41147490 41155881 -
2 domain predictions
1 GO term
Lj3g3v0116130.1
n.a. nucleic acid binding protein [Arabidopsis thaliana] gi|334185373|ref|NP_001189902.1| chr3 875693 877327 -
2 domain predictions
1 GO term
Lj3g3v0428780.1
n.a. PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Glycine max] gi|356543233|ref|XP_003540067.1| chr3 4083475 4089807 -
2 domain predictions
1 GO term
Lj3g3v1010970.1
n.a. DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1| chr3 13419823 13429104 +
2 domain predictions
1 GO term
Lj3g3v1010980.1
n.a. n.a. chr3 13421863 13425307 -
2 domain predictions
1 GO term
Lj3g3v1684630.1
n.a. PREDICTED: origin recognition complex subunit 1-like [Glycine max] gi|356557695|ref|XP_003547149.1| chr3 21595422 21604031 +
2 domain predictions
1 GO term
Lj4g3v0974400.1
n.a. Os01g0610300 [Oryza sativa Japonica Group] gi|115438452|ref|NP_001043543.1| chr4 14165531 14168406 -
2 domain predictions
1 GO term
Lj4g3v2962330.1
n.a. BAH and coiled-coil domain-containing protein [Medicago truncatula] gi|357481593|ref|XP_003611082.1| chr4 39150341 39154570 +
2 domain predictions
1 GO term
Lj4g3v2962330.2
n.a. BAH and coiled-coil domain-containing protein [Medicago truncatula] gi|357481593|ref|XP_003611082.1| chr4 39150341 39155297 +
2 domain predictions
1 GO term
Lj6g3v0775960.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr6 7378091 7383328 +
2 domain predictions
1 GO term
Lj6g3v0775960.3
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr6 7380051 7383328 +
2 domain predictions
1 GO term
LotjaGi1g1v0183300.1
n.a. BAH domain-containing protein, putative; TAIR: AT3G48050.1 protein SUO; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|K7KVT9|K7KVT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0183300 LjG1.1_chr1 35698723 35707961 -
2 domain predictions
1 GO term
LotjaGi1g1v0398900.1
n.a. Bromo-adjacent-like (BAH) domain protein; TAIR: AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|V7AU44|V7AU44_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0398900 LjG1.1_chr1 88555615 88568446 -
2 domain predictions
1 GO term
LotjaGi1g1v0398900.2
n.a. Bromo-adjacent-like (BAH) domain protein; TAIR: AT5G11470.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|A0A151TDS8|A0A151TDS8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398900 LjG1.1_chr1 88555946 88568423 -
2 domain predictions
1 GO term
LotjaGi1g1v0564200.1
n.a. BAH-PHD domain-containing protein; TAIR: AT4G39100.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FEN9|SHL_ARATH Chromatin remodeling protein SHL; TrEMBL-Plants: tr|I1K738|I1K738_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0564200 LjG1.1_chr1 109757002 109760141 -
2 domain predictions
1 GO term
LotjaGi2g1v0168300.1
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300 LjG1.1_chr2 58002009 58012129 -
2 domain predictions
1 GO term
LotjaGi2g1v0168300.3
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1KCC0|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300 LjG1.1_chr2 58002301 58010031 -
2 domain predictions
1 GO term
LotjaGi2g1v0224800.1
n.a. Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr|K7K149|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0224800 LjG1.1_chr2 68096866 68105831 -
2 domain predictions
1 GO term
LotjaGi2g1v0249800.1
n.a. BAH domain-containing protein; TAIR: AT3G48060.1 BAH and TFIIS domain-containing protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|A0A0B2Q028|A0A0B2Q028_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0249800 LjG1.1_chr2 71545828 71553455 -
2 domain predictions
1 GO term
LotjaGi2g1v0278400.1
n.a. Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT1G68580.2 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|K7K2M6|K7K2M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0278400 LjG1.1_chr2 75011372 75015618 +
2 domain predictions
1 GO term
LotjaGi2g1v0356800.1
n.a. Cytosine-specific methyltransferase; TAIR: AT1G80740.1 chromomethylase 1; Swiss-Prot: sp|C0SQ89|CMT3_ORYSJ DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr|I1J8E3|I1J8E3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356800 LjG1.1_chr2 83309833 83316196 +
2 domain predictions
1 GO term
LotjaGi2g1v0434400.1
n.a. Bromo-adjacent-like (BAH) domain protein; TAIR: AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|G7KC24|G7KC24_MEDTR Bromo-adjacent-like (BAH) domain protein; Found in the gene: LotjaGi2g1v0434400 LjG1.1_chr2 93081964 93086111 +
2 domain predictions
1 GO term
LotjaGi3g1v0012600.1
n.a. Bromo-adjacent-like (BAH) domain protein; TAIR: AT3G15605.4 nucleic acid binding protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|K7M3X0|K7M3X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012600 LjG1.1_chr3 1351390 1358128 -
2 domain predictions
1 GO term
LotjaGi3g1v0012600.2
n.a. Bromo-adjacent-like (BAH) domain protein; TAIR: AT3G15605.4 nucleic acid binding protein; Swiss-Prot: sp|Q9LYE3|ASI1_ARATH Protein ANTI-SILENCING 1; TrEMBL-Plants: tr|K7M3X0|K7M3X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0012600 LjG1.1_chr3 1351396 1358120 -
2 domain predictions
1 GO term
LotjaGi3g1v0043800.1
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4679554 4686427 -
2 domain predictions
1 GO term
LotjaGi3g1v0043800.2
n.a. PHD finger family protein / bromo-adjacent (BAH) domain-containing protein isoform 1; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|K7KWV9|K7KWV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683701 4685904 -
2 domain predictions
1 GO term
LotjaGi3g1v0043800.3
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683701 4685929 -
2 domain predictions
1 GO term
LotjaGi3g1v0043800.4
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I1M332|I1M332_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683774 4685904 -
2 domain predictions
1 GO term
LotjaGi3g1v0043800.5
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0B2RYF3|A0A0B2RYF3_GLYSO BAH and coiled-coil domain-containing protein 1; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4683872 4685904 -
2 domain predictions
1 GO term
LotjaGi3g1v0043800.6
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A1J7FWH1|A0A1J7FWH1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0043800 LjG1.1_chr3 4685062 4685904 -
2 domain predictions
1 GO term
LotjaGi3g1v0150100.1
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100 LjG1.1_chr3 20184856 20194392 +
2 domain predictions
1 GO term
LotjaGi3g1v0150100.2
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1KCC0|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100 LjG1.1_chr3 20186894 20193865 +
2 domain predictions
1 GO term
LotjaGi3g1v0154700.1
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.2 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700 LjG1.1_chr3 21040727 21045527 -
2 domain predictions
1 GO term
LotjaGi3g1v0154700.2
n.a. BAH-PHD domain-containing protein; TAIR: AT4G22140.1 PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|I3S5U2|I3S5U2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0154700 LjG1.1_chr3 21043283 21045325 -
2 domain predictions
1 GO term