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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0015700 |
| Transcript ID | LotjaGi3g1v0015700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit beta'-1; TAIR: AT1G79990.1 coatomer subunit beta-2; Swiss-Prot: sp|Q9CAA0|COB21_ARATH Coatomer subunit beta'-1; TrEMBL-Plants: tr|A0A0L9UP91|A0A0L9UP91_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0015700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1655789..1659096) extracted from Lotus japonicus Gifu genome v1.2.
CTTAACTATATAAACAGGATAGAACCTCAACCCCTTCCTACATCTGCAGCATACATCTCTTATAGCAACCAAACATCTTT GCATCAATCAATAAAATCAATAGTCGAATTTGAGGCCACCAAGTTTACAATATGGTGGGTCAATTTTATCCATTAATTAA TTCTTCCATTTCATTTGGAAGTGATCACTTTTTATATATTTTCTAAGTATTTAATTTATATTCAGTTATGCACTAACTGT GTACAAAGCTTTACATAAATATACTTAATCATAATATTTTGACATTTTTTCTATTTTCTTATTTTGACTTTTTATAATTT GGTAAAAAATAGTTAATTCTGATTGAACATGTACGTAAATTTTCATTGTCAATAAATGTCTGATGTAAAAAAAAACAACA ACAAATGCAAGCTATTTTGTTGATTTTTCAAAATTTAGTTTACAATATTATGAAAAATAAACTTCACATGATATGTTTGG TAGGTCGATTCAGCAATACACTCTTTTAAAGACATACACCAAGTCTCAACATACTTCTTATTCTCTAAGCTATTTTTTTT TAAAAGTCAACACAATTTTTAAGTAGCGAGATAAATGTTGAGTTTTCAGAAAATAAACCAAGTGTGTTGAAGAGTGTATA GCTAGCATTTGTTTTTCCATGCATAATTTAAGATTCATGATGAAATGGGTCAACAGAGGACTAACTAATCTGTGATGTTG ATTCTGTAGGAACAGTCTCTCTCCCTTGAAATTGAGGTACTGCTAGATTATCTATTTTACTTAATATTTTCCACTCATTC CTATTCAAATTTTGTTCTTAAATATGAAAACTTCTTAACATTTTCTGTTAATTATTTCTTGATCAGCATGAATTTGTTCA AAACTCCGAAAGAGTGAAATCTGTGGAGCTGCACCCAACTGAGCCATGGTAATTACACTTATAATTGACTGATAAACTTA TTAAGCATTTCTGCAACACAAACAGTCTAGAACATCAAGTCCTGTGTATTTGAGATAGAAAAACATCATCAGTTAGCATG TTTCCTTTGGCAAATTTCTAAGTGTAGCAGACTTATAACATGTTTGGATCAATTTGTCTTTACTTGGAATCAATTCTGAT TTTCATAAGCTAATAATAGAAGCTTCTCCCTAGAATTAATTCTCACTTTACAATCAATTGTAGAAGATGTTCCAAACATT TAAGTTTATGTGAGTACAACTGTACAAGTACTTACATCTAGTACTTTTCTCGTGCAGGGTTCTTCTGGGGTTGTATTCAG GAACTATTTCTATTTGGAACTATCGGACGAAGGTAAAGAATAATGTGTCAAGAAACTAGCTTTTCTGACAATAAATCATA AAAATAAAACCATGATCTCTATGAATTTATTCCTAGTGTGTATTGGAAATAGATTCAGAAACAATAGAACTAGTAGTTGT TCTGTATCTTTCAGCATATGTAAGAGTTTAGTCTTTTAATTTCTTGAGGTTGCTACAGAATTCTGAGGTAGGACTTTGGA GTTTATTGTTAACCTTTGTTTTGATATTATGACAGAAAGAAGAGAAGTCTTTCAAAGTCAGTGAATGTCCAGGTAAATGT CACAATGTAACACTTATTTGAGTTTTTCCCCTGGTTTTTCTAATAGATGAGCTCCAATAAGTGCTCTTTTAGTTTATATC GAAACGGGATATTCCTGTAATGTGTCTAAGTTCTTAACTTGGTTATATCTTATGTTTGCAGTTAGATCAGCAAAGTTCAT TGTTCGCGAAAATTGGGTTATCGCAGCAACTGATGACAAATATATTCGAGTCTACAATTATGACAAAATGGAGAAGGTAG TAGAATTTGAGGGACACAAAGATTACATTAGGAGCTTGGCTGTTCATCCTTCCCTGCCATATGTGGTGTCCGCTTCTGAT GATCACGTTCTAAAGTTGTGGAATTGGAGCGAAAATTGGGCTTGTGCTAAGACCTTTGAAGGACACTCACATTATGCGAT GCAAGTCGCATTCAATCCAACGGATCCAGCCACCTTCGCTAGCGCGTCTCTTGACAGCACTTTGAAGGTATCCTCAGTGC TCTAGAATCACTTCAGTTTAGAAGCTATAAGTCTTATCCGCTTCTGAGTAAATATGTCTTGGATTCTGTGCAAACTGTGA AATCAAACATACTAATAGCCGCAACTTATAGCATACCTTCAATTCATTAACCAGCTTCAATTGTCTCTTTTTGTAGATTT GGAGTCTTGATTCCTCAGCTCCATGTTTTACCCTGGATGGACACTTGAAAGGAGTGAATTGTGCTGATTACTTCATAAGC AATGGCAAAGAATATCTCTTAAGTGGTTCTGATGATTACACTGCCAAGGTTTGCATGTCAATTACTCATTGATTAGGCCT TAGTGTTATCTGTTTTTTAGTCTTTGTCTCTTTGAGATAATTTAACATTGAAGCCTGAATCCACATTTCAACAGGTATGG GATTATCAATCTAAAATTTGTGTACAAACTTTTGAAGGACATGGAAACAATGTTACATCAGCAAGTGCTCATCCTGAGCT TCCTGTAATAATAACAGCTTCGGAGGATTCTACTGTCAAAATATGGGATGCTGTCACATACAGGTACTTTATTAGCTATT TGAATTCTCATTGGATAAAATCACTTTTGAATGGTTACATAACATACATCATTGAAAATTGGCATACATACAAGAAAGGA TCATAACATTTATCAGTGTGTTAAAACTTAAAAGCTGTTAACATTTGCCATTTACTTGCAGGCTTCTTAACACATTAAAC TTTGGTCTGGAGAGAGTGTGGAGTATTGCATACAAGAAAGGATCATCCCAGTAATTATCTGAAACTTCTTTTGACTACTA ATAATCATAAAACCTTGTTAATTTTCTTTACTAATTGGCACCACATTGCTACTTGCTACAGGGTTGCTTTTGGTTGTGAC AAAGGATTCGTCATTGTTAAACTGAATCTGGAAGCTGCCAAATGAAACAAGATTAAAAGGGCAAGGAAGACACAATAAAC CTCTGCTGCTGGCAAGAGGACACACAGTTATGCTGAGCTTTAAGCTTTTAACTACACAGAGAACATTCTATTCTGCCATT TGTTGTTTGTGTTTTAAGATTTTAAGTTTTTCCCTGAATAATATGAGTTTATTGTATACCATAGGCCCTTTGTTCTCAGC TCCATTCCTACTTTGTTTATTGTTTGAAGGTTTAATTGCAATTTTAGTAATGTAATATACAGTTGATATGTGATTTTGAT CTCTAATAATTTATGGTCGTTGTTCCGG
CDS sequence (LotjaGi3g1v0015700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACAGTCTCTCTCCCTTGAAATTGAGCATGAATTTGTTCAAAACTCCGAAAGAGTGAAATCTGTGGAGCTGCACCC AACTGAGCCATGGGTTCTTCTGGGGTTGTATTCAGGAACTATTTCTATTTGGAACTATCGGACGAAGAAAGAAGAGAAGT CTTTCAAAGTCAGTGAATGTCCAGTTAGATCAGCAAAGTTCATTGTTCGCGAAAATTGGGTTATCGCAGCAACTGATGAC AAATATATTCGAGTCTACAATTATGACAAAATGGAGAAGGTAGTAGAATTTGAGGGACACAAAGATTACATTAGGAGCTT GGCTGTTCATCCTTCCCTGCCATATGTGGTGTCCGCTTCTGATGATCACGTTCTAAAGTTGTGGAATTGGAGCGAAAATT GGGCTTGTGCTAAGACCTTTGAAGGACACTCACATTATGCGATGCAAGTCGCATTCAATCCAACGGATCCAGCCACCTTC GCTAGCGCGTCTCTTGACAGCACTTTGAAGATTTGGAGTCTTGATTCCTCAGCTCCATGTTTTACCCTGGATGGACACTT GAAAGGAGTGAATTGTGCTGATTACTTCATAAGCAATGGCAAAGAATATCTCTTAAGTGGTTCTGATGATTACACTGCCA AGGTATGGGATTATCAATCTAAAATTTGTGTACAAACTTTTGAAGGACATGGAAACAATGTTACATCAGCAAGTGCTCAT CCTGAGCTTCCTGTAATAATAACAGCTTCGGAGGATTCTACTGTCAAAATATGGGATGCTGTCACATACAGGCTTCTTAA CACATTAAACTTTGGTCTGGAGAGAGTGTGGAGTATTGCATACAAGAAAGGATCATCCCAGGTTGCTTTTGGTTGTGACA AAGGATTCGTCATTGTTAAACTGAATCTGGAAGCTGCCAAATGA
Protein sequence (LotjaGi3g1v0015700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQSLSLEIEHEFVQNSERVKSVELHPTEPWVLLGLYSGTISIWNYRTKKEEKSFKVSECPVRSAKFIVRENWVIAATDD KYIRVYNYDKMEKVVEFEGHKDYIRSLAVHPSLPYVVSASDDHVLKLWNWSENWACAKTFEGHSHYAMQVAFNPTDPATF ASASLDSTLKIWSLDSSAPCFTLDGHLKGVNCADYFISNGKEYLLSGSDDYTAKVWDYQSKICVQTFEGHGNNVTSASAH PELPVIITASEDSTVKIWDAVTYRLLNTLNFGLERVWSIAYKKGSSQVAFGCDKGFVIVKLNLEAAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 303 | 303 | 7.3E-174 | – | |
| PANTHER | 1 | 303 | 303 | 7.3E-174 | – | |
| SUPERFAMILY | 6 | 298 | 293 | 2.33E-75 | ||
| SMART | 6 | 45 | 40 | 0.96 | ||
| Gene3D | 12 | 302 | 291 | 2.0E-106 | ||
| ProSiteProfiles | 13 | 54 | 42 | 8.57 | ||
| ProSiteProfiles | 13 | 268 | 256 | 47.615 | ||
| CDD | 19 | 289 | 271 | 8.52517E-62 | – | |
| SMART | 48 | 87 | 40 | 0.37 | ||
| SMART | 90 | 129 | 40 | 7.7E-8 | ||
| Pfam | 94 | 129 | 36 | 5.4E-7 | ||
| ProSiteProfiles | 97 | 129 | 33 | 13.382 | ||
| SMART | 133 | 173 | 41 | 1.1E-7 | ||
| Pfam | 135 | 173 | 39 | 0.016 | ||
| ProSiteProfiles | 140 | 182 | 43 | 12.012 | ||
| PRINTS | 160 | 174 | 15 | 1.7E-7 | ||
| SMART | 176 | 217 | 42 | 7.9E-6 | ||
| Pfam | 181 | 217 | 37 | 1.5E-5 | ||
| ProSiteProfiles | 183 | 226 | 44 | 10.776 | ||
| PRINTS | 204 | 218 | 15 | 1.7E-7 | ||
| SMART | 220 | 259 | 40 | 5.4E-9 | ||
| Pfam | 223 | 259 | 37 | 4.7E-7 | ||
| ProSiteProfiles | 227 | 268 | 42 | 14.886 | ||
| PRINTS | 246 | 260 | 15 | 1.7E-7 | ||
| ProSitePatterns | 246 | 260 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0015700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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