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LotjaGi3g1v0016700.1

Overview

Field Value
Gene ID LotjaGi3g1v0016700
Transcript ID LotjaGi3g1v0016700.1
Lotus japonicus genome version Gifu v1.2
Description Ras family protein; TAIR: AT4G19640.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|I3T7J1|I3T7J1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0016700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:1735823..1741691) extracted from Lotus japonicus Gifu genome v1.2.

GTCCAAATATAGATCACACTCAAATTAACCACTTCCTAATCATCATGTTGTATGTTTTTGTTAAAAAGTAAAAAATAACA ATTTATTGTAACCTAATTTGAGTTACTCTAAAAAAATAACAATTTATTGTAACAATTCTTGTAACCTAATTTATTTTAGA TAATTCTAATATCTTCACGTTCAGCCACCTCATAGTTTACAATTTACAAATAATTATCATTATAAATAACTTAAATAATT ATACACATGGAGAGAGCTTTTCCTATGTAACAAAAACATACACATGGAGAGAGGGATAATTGACATTTAACTTCGCAGAC CTTGTGCGGTTTTTGGCTAGCTCTCGAGTTCATCACTGAAGTAAAATCACAAACATATTTAGTAATATAATTAAGTACAA TTATTGACATATTTACCATCAAATTGTAATTAAACAAAGTGAAAGCTTACCTCGCGAAGACAATGTTGGCGAATAATTGT ATGGTTTAATGTACTGACCAAAATTTCACATGATTGTTTTGCCTGTTGGGGGTATTATCATATTATTACAAGATGGAGCA TGCATGCAGCATCAACAGAATAAATTGTTCATGTGGAAGTTCTACAAATTAAGGAATTAGTTTCCCTATTTCTCTTCTGG GCCATTTCAGTTCAATGACCAACACCACTCATAGTTCAATAGGAAGAAAATTGAACCAAATATTAAATAAATAAAGTAGA AAAACAAAAGAAAGAAAAACTTTAACTCCCGACCGTCATCGCTTAATACGTTAACCGTGATATGAAAAATTAATTTCAAG GTTATTAACTGTGAGATACCTTTATTAAGACAAAAACAAACGACTAGAAATAGAAATTGCACATAAAGCCTCTCTTATGA GCTAAATTATCGTTTCAAATTGTTTTAGCTCATCTTCCTCTTATAATCCAAAAAAATTGTTTCAGCTAAATTCAATATCA CCGATTTTGTTAATTTTTCTTTGATTTTAACATGATACGATCAGTTGATTACAAGTTTCGAGATCTATAGAGATTTTTAT GTAAATGGACTACCAATTGCTTATTTGATGACCAACTCAATAGGTTAGACTGACCGGTCCGATTTTCATATTATTTTTTT TCCAAAAAATATATTAATCAATGAAAATTTCATTTCTTTCAATAAAATATACTAATCAATGTAATTGATAGCCATAAATT ACCTGCATTGGGAAGTGAAGGAAGAGAAGCCCCATTTGGCCCCTAACCTCACTAACAGTATCAAAGGGCACCATACCCTT AGCCACGTCCTCCAGCAACATCACCATATCAGGGACCACACCAATCCCCTCAAATTCCACGTCAGCGTCCACGTGGGACG ATCCTCTCGCACTCACGTGCCCGTGCTCCGACGTCACGTGCCCCAGCGCCTTCCCCCTATACGCAACCACCACGTCCACC GCGCCGAAATCCATGGAGTACACGCCGGCGTTGCTCACCATCAGCGTGAGGATCATGGAGATGTCCACCGTCACGCGCGG AAACCGATGCACCTTGATCCGCTTCAGCTTCAGCCGCACGATCTTCAGATCGGGATCCGTCGGCCAGAAAATGTACGCCG TCGTCAGAAAGAGGAGGATCCCCGCCGTGCATGTCACCTGACGGCGGCGCGTGGTGAAAACGACGCTGTTTTGGTGGTTG CGTCGGCAGAGGAGATTGGTGTAAGCTTTCAATTTTGAGATTGACATGGTTTTTGTTCTTCTTCTTCTTCACAGTGTGTA TTGCAATGTGATTGAAGTTCATTGATTGAAGAAGATGAGTATTATTGTTTTTGTTTTGGTATGATGGAAATTGTGGCGGT GTTTCCTTTTTTTTGTTTTTGGTGTAACTGTGTTTCAACCTTGCTTGTGCTTCAAGTGCAAGTTTGAGAAATGAGGTAAC TTCTGTAAAAAGTAATTTTTGTGTGGTTAAACTACAGGTGTTCCTGTTCGAGCCGGGGTAGGACGGACCATTATGGGCGG CAAAGCTTTTGCTAGTATTCACAGGTACTTGAACTCAAGCGCGTCTGCTTGAGTGCTAGAATGATCTCATGCCAGTTGAT CTACGCGCTTAGTGGTCTTTTGTAGATGTGAAAAGTTTTAATAATAACAGCTCACATTATAATTGATGTATTTGGTGAAA ATGGAGATGAAGTGATAGCTTCTTGTTTTAATATATTATAAATTGAAATAGATTTTACAATCATTGCAATTTGCAAGGAT AATTATGTCTAGAGCCTCTAGTGAGGTTGCTGTCAATCAAGCTGCATTTTGAAAAGGAAACATGGTATCCATGTGGTTTT TTAAGTGTTTACCACTTTAGGTTGAGACATGCAGCAGCATGTTTGCAGTTTTTAGGCCTCCATAAATATAGCAGATAAGA ACACCATGAAAGATGAATATTAAAGAGTCAGGGCTTTGATATTTGAAATTACATCCAACTAACAGTCAAAGTCAAACAAA ACTACCAGTCTCAATGAAAAAATTAGCTAGTAGTATAGTTGTTCCTTTGGTATAGAAGTCTGTGTTACTTTCAACATAAA ATTAATCCCTTTCTCTTTGCAACTTCTACAACTTTTCTTTCTTTCAATCTTGTGCCTTGTGGTATGGCAAAGCCTGGGAA TAAGATCATTCAAGCCAAGCTGGTGGGTATGTCTTACCTTATTTTTATTTTCAGATACATTTTATTCCATCTGCACTTCA TCTTCACCTTTCCAAACATACCTTTTTCGTAATCTCGAAATGGTTGTCTTATATAGAATGTTTGGTTCTATGGTGAAAAG CTGAGGGATCACTTCCTGTTAAAAGCTACAAGTATGAAATAGAGACATTAGACATATAAGAATATCAATATTGCAGGATT AACTAACTAAATAAGATTTTTCTTTTATTATCATTTGACTAAATATTCATTTTGATAATCGTCAATGAAATCTCTTTACA TGCATCATTCATAGAAATTTGGATCTGATTATTAGTTAGTTAGTTAGTTACAAAGAATCACCTTAGCAACAACTTTTACT CTTTCAAATCACCCTTTTGTTATGTTTCATCTAAAATTATGTTTCTTAGAAACAGTTACTTGCAGATTTACATAAAATAT GCTTGCTCTTGTAGGTACTTCTTGGAGACATGGGAACTGGGAAGACCAGTTTAGCATTAAGATTTGTTAAAGGACAATTC TATCCAAACCAGGTATAATCTCATTTGATTTCAGTGAATAAAACTTGTTGCATACCAGTATCCCATTAGCACTGTACTCA CTGCAGTTTAGGAACCTCAATTGATATTAATCAAAATACAGGAACCAACTGTGGGAGCTGCTTTTTTCACTCAAATATTA TCATTATCTGAAGCAACTGTGAAGTTTGACATATGGGACACAGCAGGACAGGAACGATATCATAGTCTGGCTCCTATGTA CTACCGTGGTGCAGCAGCTGCAATTGTTGTGTATGACATCTCAAGCATAGTAAGTATTCAGTTTGTTAAATTTGAAACCA TTTGCCAAATTAATATAGCTGGTTCATGACATGGTCTCAGAGTCTCTATGACAAAGTGGTCTAGAGTTTGATTCTTGTTG CCCAAATTGTTCTGATAAATAAAGTTGAGTTTCAACACAAGATAGATGAGTTTGTGCATTGTCTACACTTCAAGCCTGAT GGGCTTATGCTGGCATGTTAGAAATATAAAATACAATCATTTTTGTGTCTTTACACAACAACTTAAGTTTTAAGGATAGT TGGTTCATCACACATTGTACATTAGGAAAGTGATAGAACAATTTATAAGCAAATGTAACATATAACTAAAATAGATTCCT TCCTAACTCCCTCTTTCTTAAAAAGCCTTATATGAATGGCAATTTAAGTAGGTAGGTTAACTTAATGGAAACCTGTCTTC AGGGCATAATGTTGTCAAAAAAAGAATGTAGTTGTGTTGTATTATGTTCTCTTAGCTCTTGAATTGTGTCTGTAACCTCA CTCTCAAGAAAGAAAGCAATAATAGAGTGGACACTGAATAATACATCACTAACCTATACTTAAGAATTTCCTACTCTCAT GAATTTTCATTTCTTTCATGCACATGTGCATGAATCTTAAAATTATCTAACTATTATGATTTTAATTGGTGTTTCAGGAT ACGTTTGTTCAAGCCAAAAAATGGGTCCAGGAATTACAAAGACACGGTAATGCCTCAAACACAGGAAATTAACAATTTTG TTATTAGCAGAAGCCTTGGGTTCCTCGTCATGTGATTACTAGATTGTAATATTCATCATCAAATTAATTGGGGTTTTGAG AATCCAATTTAGAGTTTGTATGAGTTGATTGAGTTAACCCATATCTTTTATTTGTCACGATTATTTTCATCCATGAGTAC TTATTGCTTTAGCTCTTTTTTCTTATTTGCTGCAATCCAGCTTCTACCAGTAGAATTCCACTGTCCAATTCCAAAATCAC AAACGCACAAGTCATTCACTTATTTAAGTCTCCTTGGACCGTAATAACATGCTTGTATCTCTCTTTCTTCTCACTATAAT ATAACCATACCACCTCTTGTAGGAAATCAAAAGCTGGTGATGGCACTGGCAGCAAACAAATCTGACTTGGAGCCAAAGAG AGAGGTTGAAACTGAGGTAGCATTCAGATCATCTTCACACCCTTTTCTGTTTCTGTCTTTTCCTTGGAATAGAAAAATCT TGATTATATAAGTGATAAGTGCATTGATTTATTCCCAATATTTACTTGCATGTTTGGATTGGTGGTGGCACACAATCCAA ACCGTCGTAACTCCAGAAGCTACACTTTCAAACTTCTCCATAAAAGTAATTATAGGGTTTTCTGCCACATGACGAAACAC GCTATAAGCTTTTATCTTAGTTAATTCTTAGTTAAGTTTTTTCTCTTTCTTTACCTTTTCTCCAGTTGAAAACACATCAA GATTAGTAACTTGGATAAATGCTTCTCCATTTGAAAACAAGATATGTGGACAGTGCTATGTTACATAATTGCAACAGATC CCTCTTTCCTTCTCCTTTTGCATTTAACTTGTTTGGGTAAATTAAACTAATACAGGAAGGAGAGAAATTTGCACAAGAGA ATGGAATGTTTTACATGGAAACATCTGCTAAGACTGCAGAGAACATCAATGAGCTTTTCTATGAAATAGGTACATGTTCA ATTATAGTTCTCCAATAGTCAATTTGGCATGGAGTAAAAATGCATTGAAAATTCAAAGACCAGAATTCAGTATTTTACTA TAAACTTATTCATGCATCTTTCATCTCCATCAAATTAAGGGGTTGTTTCTATCTGATTAATGCAGCAAAGAGATTAGCAA GAGCTCTTCCACTAAAGCCCTCTGGAATAAGTTTGAACAATGATAACCAAGATAGAGGGAGAAATTTTTTTTGTTGCTCA ACATGATATTCCCATGTAATCAAGTCACTGAATAAAGAATGGTACCGTGGTATTCTTGGCTTCCTTCTTGTAATATTGAT TATTGAATTACTTCACTACCTCTTGTAGTTTACCTCTGATCTGGAGTCATGTTCTTTTTCTTTTCTTTGGGTATATAAGT GGTTTTCCTTCCTTTCTTTGTAGAGAAGTTTACACGTAATAAAAAGGTCACAGATTAGATTTCAATACAAATTTTAGTAA TAAAACTTAGGCTTAAATGTGTTTAGTCACTGGAAATATAACAAATATTGTTTAGTCCCTGAAAAAATATTTTTTTTGTT TTCAGTCCTTGCAATTAACTTTTGCTTATGACACCCAGAATGGTGATTTGTCTTATATGGCCTTTTTAAGTCTTATTTGA CATCTATGTATTCCGTAATCTAATTTGAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0016700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAAAGCCTGGGAATAAGATCATTCAAGCCAAGCTGGTACTTCTTGGAGACATGGGAACTGGGAAGACCAGTTTAGC ATTAAGATTTGTTAAAGGACAATTCTATCCAAACCAGGAACCAACTGTGGGAGCTGCTTTTTTCACTCAAATATTATCAT TATCTGAAGCAACTGTGAAGTTTGACATATGGGACACAGCAGGACAGGAACGATATCATAGTCTGGCTCCTATGTACTAC CGTGGTGCAGCAGCTGCAATTGTTGTGTATGACATCTCAAGCATAGATACGTTTGTTCAAGCCAAAAAATGGGTCCAGGA ATTACAAAGACACGGAAATCAAAAGCTGGTGATGGCACTGGCAGCAAACAAATCTGACTTGGAGCCAAAGAGAGAGGTTG AAACTGAGGAAGGAGAGAAATTTGCACAAGAGAATGGAATGTTTTACATGGAAACATCTGCTAAGACTGCAGAGAACATC AATGAGCTTTTCTATGAAATAGCAAAGAGATTAGCAAGAGCTCTTCCACTAAAGCCCTCTGGAATAAGTTTGAACAATGA TAACCAAGATAGAGGGAGAAATTTTTTTTGTTGCTCAACATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0016700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKPGNKIIQAKLVLLGDMGTGKTSLALRFVKGQFYPNQEPTVGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY RGAAAAIVVYDISSIDTFVQAKKWVQELQRHGNQKLVMALAANKSDLEPKREVETEEGEKFAQENGMFYMETSAKTAENI NELFYEIAKRLARALPLKPSGISLNNDNQDRGRNFFCCST
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51419
5 200 196 31.809 –
Gene3D
G3DSA:3.40.50.300
7 198 192 3.9E-62 –
SMART
SM00173
8 174 167 2.6E-27 –
PANTHER
PTHR24073
9 198 190 6.0E-97 –
PANTHER
PTHR24073:SF825
9 198 190 6.0E-97 –
SUPERFAMILY
SSF52540
10 175 166 5.82E-54
IPR027417
CDD
cd01860
10 171 162 1.79842E-109 –
TIGRFAM
TIGR00231
10 167 158 7.7E-29
IPR005225
SMART
SM00175
11 174 164 5.0E-75 –
PRINTS
PR00449
11 32 22 6.8E-34 –
Pfam
PF00071
12 171 160 6.3E-58
IPR001806
SMART
SM00174
13 174 162 2.9E-12 –
SMART
SM00176
16 199 184 1.0E-4 –
PRINTS
PR00449
34 50 17 6.8E-34 –
PRINTS
PR00449
52 74 23 6.8E-34 –
PRINTS
PR00449
114 127 14 6.8E-34 –
PRINTS
PR00449
149 171 23 6.8E-34 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0016700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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