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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0018200 |
| Transcript ID | LotjaGi3g1v0018200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rop guanine nucleotide exchange factor-like protein; TAIR: AT1G79860.1 RHO guanyl-nucleotide exchange factor 12; Swiss-Prot: sp|Q9CA89|ROGFC_ARATH Rop guanine nucleotide exchange factor 12; TrEMBL-Plants: tr|K7M904|K7M904_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0018200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1894904..1898851) extracted from Lotus japonicus Gifu genome v1.2.
TCACAAAACAAAATTCACCTAACATGAAAAAAATAATGCAAATTTTGTCTCTCTCACTCTTAATCCCATTCCATTTCTCA CAACATGCACCCCACGTTCATTAGAACTTAGCTCAAAAAAGAAAACAGAAAAAACTAACTCAAAAACCATCAAACAAATC ACCTCCACTCTTTTGTCAAACTAACAAACCAACCAACCCAAAAAAAAAGAAACTCCCATTTCATTTGTTTGTTACTACTA TACTTTGGCTTCTCTACCTGCTGCAACTTTCCTTCTCTCCCACTTTCTCTCCCTAAAGGGTCTTGCAACACCCCATGTTT TTTTCTTTTTTGTTCACCCTTTAAAAGTTTTTTCCAAGGGAAATACTTAAAAAGAAAAAAACATGGTTCGAGCTGTGGAA CAAGACCAGGAAAATCCCAGGTCCAAACTGTTCAATTTCAGAGGGATGTTTGAGAACACTGGGAGGCATGCTAAGAGCTT GAGCGTTGACACCGGCACTCGATTGGATCCTACGGCAGAGGATGGTGCAGCCTCATCAAGAAGCCAAGGATCAAGACCAA TTAATGATTTGGACAAGGTTCCTAAGGCAAGGATCATAAGCAAGGAGGAAATCGCAGCTAAGGAAGCCAAAGAGAAACTA TTACAAGGTGTGAACATTATGTTGTAATAATGATCCTTGTTTCTTCTGTAGATAACTTGCATTGGATTTGTCTATAATAA TTGATATTCTAATCTGAAGGTGTGAACATTATGTAATAACAATGATTTAATAATCTAATTTTCTATAATTTGATCAAATG ATGAGCTTTATATGTATTAAGTGCTAACAACATGATATTCATTTTGAAATTTGATATTCACAATTGGGTTTTAATTCAGA GATGGAACAGATGAGAGAGAGATTTGCAAAACTGCTATTGGGTGAGGACATGTCCGGTGGAGGAAAAGGTGTTTCTTCTG CATTGGCACTGTCAAATGCATTCACAAACCTTGCTGGTATTTTTTCTCTCTTTCGACTATTACATGCCATTTTCTTTCCT TCCAATTTCAGCTGCATGTCATGAATATTTCATTAATTCAATTCAATGTTATTTTCTCTCACATTCTTTTCTCATTGAGA ATGCAGCTTCTGTTTATGGTGAACAAAAGCGCCTAGAACCGATGCCGGCAGAAAGGAAAGCAAAATGGAGAAAAGAAATT GATTGGCTTCTATCAGTCACAGATTATGTTGTTGAAATGGTTCCTACACAACAAAAATCAAAGGATGGTTCACAAATGGA GGTAACCCTCTCTCTCTCCTTGACGAGGATCCTCTCATATCACATGACGTCATGCGAAAGTGTATTAATCGTTCTCCGTA AATGTTCAGAGGGTCTCACTTATTTAATAACGAAGAGAGATAAACATAATTACAACATGACAATGTCATGTGAAGTTTTC ACGAGAGGATCCTGATCCATCAATGCGAGTGTGTTAGTTATTCATCTTTTCCATACATGGAATTGTTAAATGATTGAATC ACCTGATCTGATTTTCCATTGAATAGATTATGACAACGCGACAACGAGCAGATCTTCACATGAATATCCCTGCCTTGCGC AAGCTTGATGCAATGCTTCTTGTAAGATCACAAACCCTGTATGATCATCATTTTTCTTCTACACGTTTAAATCAATTGTT AGTCATGTTGAAAAATTGCTGTTTATTTATGATTCAGGAATGTCTGGATAACTTCAAAGATCAAAATGAGTTCTACTACA TATCGAAAGATGCAGATGATTCAGATTCAGACAGTGGAAAGAAAAAAAATGATGATAAGTGGTGGTTACCTGTACCTAAG GTTCCCGCGGAAGGTCTATCTGATGCAGCGAGAAAATTTCTACAGTATCAGAAAGATAGTGTGAATCAAGTACTTAAAGC AGCCATGGCAATTAATGCACAAGTTCTAACAGAAATGGAGATCCCTGAAAGCTATATTGAATCCTTACCCAAGGTGAGAC AAAAGCAACAACTATATTGAATATTCGTGGGTGTATGCGGGTTGTTTGAACTGTGCAGATGTCCACGAATCATTTTCATT ATTCTGGCATTCTTTCTTTTCACACAACATAAATTTTGTTTTCTTTTCTTCTTTTATAGAATGGAAGAGCAAGTCTTGGG GACTCAGTCTACAGGAGCATTACAGTTGAGTTTTTTGATCCTGATCAATTCTTATCAACCATGGACTTATCATCAGAACA CAAAATCCTAGATCTCAAGAATAGAATTGAAGCATCAATAGTGATTTGGAAGAGGAAGATGAACCAAAAAGATAGCAAAT CTGCTTGGGGTTCTGCTGTAAGTTTGGAAAAAAGAGAGCTCTTTGAAGAGAGAGCAGAAACCATCTTACTTCTCTTGAAG CACCGTTTCCCTGGCATTCCACAATCTTCATTGGATATAAGCAAAATCCAATTCAACAAGGTAAGGACTTCTCTCCAATA TCTTCATTTACTTTAGTTTCAATCAGCTGAATTAAAGAGGTCCAAATGGTCTTAACTCTTAACATCTAAGCAATGAGCAA ATTTTCTGTACTCCTCTAGTATTGAAGATTCAGTACATCTACACTGACAATGGGATAGTTATCCTTTTTTTCTTCTCAAT TTCATACAAAAAACTGGGAACAACTTAGCATACATACCAGGTGTATTGCTGTAAGATCGAGGATTAATATGTTCGAGTAC TGAAAAATTTCCCTAAACAACATCGTATATGATCAGTAATGATATTTTAGATACCCTAACAGTGCAGACACCTTATTTTT CTCTCTATGTTATTCACATCCATTTCTTCTCTATATTCTCTTCCTCTTCTCTTCTCTCCGGCATTATGCGGGCGTCTACT GATCATTTTCCTATCTGGATATGTTTCCATTTTCTGTTTCATGAATAAGTATATGATGAGTTTGATATGGTTGGCAGTGT CATCTAATAGACTAATTTTATTGAGTTTAACTAACAAAAAAAAGGAAGGAAGGGACTAAGTTTGATGGGATTTGTTAATG TTGGCAGGATGTGGGGCAAGCAGTTCTTGAGAGCTATTCAAGAATATTGGAAAGTTTGGCCTTCACAGTACTTTCAAGAA TAGATGATGTGCTTCAAGCAGATTACCAAACTCAAAATGTACCAGGAAGAAAGAGCAGTGCTGCCAGAATCTCCTTTTCG AAGCCGAGTCCTAGAGAAGAGATGGACAAGGTTGGTGCAGATCAAACGCCTGGTTCAATGACTCTATCAGATTTCATGGG TTGGGGCTCTGATCAAGCTGACTCAGAGGTGAAGAAAGACCCCTTCGCAGCTTCAGATGATTTTTACAATAATGTTGATA TGAAGCAACCACAAAAACTTCCAGAAGTAGTGACCACCAAGAAAGTGTCATACCTTGAGACATTGGGTGTGATGAGAAGT CCCACATCGCGCCATTGAAGAACAAGAGTGTAGAGTGAGAAGCTTGGTCTTCAAAATCAAAAGCACCATCAGACCACTTA CCCATAATGGTGTTTTGTTAGAGTCTTGATAGCTTAATTTTGGTCAATTCCTTCCTTTTGTACATAGGAATGAATATATA GCACCATCAGCTTTGAAGCATTGTCAAATATTTATATTATCCTCAGTATATATGAGAAAGATTTGTAGTCTGGTAGCCAC CTTGATAAGATTTAAATTTAGGGCGTGTTTAGATACAAGTTAAACCTTAAGTGAAAATGTACCTTTTTCTCAATCTATAG AAAAAAAATTCGTTCACTTAAGTCTCAAAGTGTCTCAAAGTACTAATGTTAATGAATATCCAAACATATCCTTAATGAAT GTAAACCTTGTCTAGCAGAACCGAACTAGTTGAAACATGTAGAATAACATAGAAGGACATTTTTAAGTGAGTGTTTTTAA ACTTTAAATTAGTAAAATAAGTTTTAAA
CDS sequence (LotjaGi3g1v0018200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCGAGCTGTGGAACAAGACCAGGAAAATCCCAGGTCCAAACTGTTCAATTTCAGAGGGATGTTTGAGAACACTGG GAGGCATGCTAAGAGCTTGAGCGTTGACACCGGCACTCGATTGGATCCTACGGCAGAGGATGGTGCAGCCTCATCAAGAA GCCAAGGATCAAGACCAATTAATGATTTGGACAAGGTTCCTAAGGCAAGGATCATAAGCAAGGAGGAAATCGCAGCTAAG GAAGCCAAAGAGAAACTATTACAAGAGATGGAACAGATGAGAGAGAGATTTGCAAAACTGCTATTGGGTGAGGACATGTC CGGTGGAGGAAAAGGTGTTTCTTCTGCATTGGCACTGTCAAATGCATTCACAAACCTTGCTGCTTCTGTTTATGGTGAAC AAAAGCGCCTAGAACCGATGCCGGCAGAAAGGAAAGCAAAATGGAGAAAAGAAATTGATTGGCTTCTATCAGTCACAGAT TATGTTGTTGAAATGGTTCCTACACAACAAAAATCAAAGGATGGTTCACAAATGGAGATTATGACAACGCGACAACGAGC AGATCTTCACATGAATATCCCTGCCTTGCGCAAGCTTGATGCAATGCTTCTTGAATGTCTGGATAACTTCAAAGATCAAA ATGAGTTCTACTACATATCGAAAGATGCAGATGATTCAGATTCAGACAGTGGAAAGAAAAAAAATGATGATAAGTGGTGG TTACCTGTACCTAAGGTTCCCGCGGAAGGTCTATCTGATGCAGCGAGAAAATTTCTACAGTATCAGAAAGATAGTGTGAA TCAAGTACTTAAAGCAGCCATGGCAATTAATGCACAAGTTCTAACAGAAATGGAGATCCCTGAAAGCTATATTGAATCCT TACCCAAGAATGGAAGAGCAAGTCTTGGGGACTCAGTCTACAGGAGCATTACAGTTGAGTTTTTTGATCCTGATCAATTC TTATCAACCATGGACTTATCATCAGAACACAAAATCCTAGATCTCAAGAATAGAATTGAAGCATCAATAGTGATTTGGAA GAGGAAGATGAACCAAAAAGATAGCAAATCTGCTTGGGGTTCTGCTGTAAGTTTGGAAAAAAGAGAGCTCTTTGAAGAGA GAGCAGAAACCATCTTACTTCTCTTGAAGCACCGTTTCCCTGGCATTCCACAATCTTCATTGGATATAAGCAAAATCCAA TTCAACAAGGATGTGGGGCAAGCAGTTCTTGAGAGCTATTCAAGAATATTGGAAAGTTTGGCCTTCACAGTACTTTCAAG AATAGATGATGTGCTTCAAGCAGATTACCAAACTCAAAATGTACCAGGAAGAAAGAGCAGTGCTGCCAGAATCTCCTTTT CGAAGCCGAGTCCTAGAGAAGAGATGGACAAGGTTGGTGCAGATCAAACGCCTGGTTCAATGACTCTATCAGATTTCATG GGTTGGGGCTCTGATCAAGCTGACTCAGAGGTGAAGAAAGACCCCTTCGCAGCTTCAGATGATTTTTACAATAATGTTGA TATGAAGCAACCACAAAAACTTCCAGAAGTAGTGACCACCAAGAAAGTGTCATACCTTGAGACATTGGGTGTGATGAGAA GTCCCACATCGCGCCATTGA
Protein sequence (LotjaGi3g1v0018200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRAVEQDQENPRSKLFNFRGMFENTGRHAKSLSVDTGTRLDPTAEDGAASSRSQGSRPINDLDKVPKARIISKEEIAAK EAKEKLLQEMEQMRERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAASVYGEQKRLEPMPAERKAKWRKEIDWLLSVTD YVVEMVPTQQKSKDGSQMEIMTTRQRADLHMNIPALRKLDAMLLECLDNFKDQNEFYYISKDADDSDSDSGKKKNDDKWW LPVPKVPAEGLSDAARKFLQYQKDSVNQVLKAAMAINAQVLTEMEIPESYIESLPKNGRASLGDSVYRSITVEFFDPDQF LSTMDLSSEHKILDLKNRIEASIVIWKRKMNQKDSKSAWGSAVSLEKRELFEERAETILLLLKHRFPGIPQSSLDISKIQ FNKDVGQAVLESYSRILESLAFTVLSRIDDVLQADYQTQNVPGRKSSAARISFSKPSPREEMDKVGADQTPGSMTLSDFM GWGSDQADSEVKKDPFAASDDFYNNVDMKQPQKLPEVVTTKKVSYLETLGVMRSPTSRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 539 | 539 | 8.8E-268 | – | |
| PANTHER | 1 | 539 | 539 | 8.8E-268 | ||
| MobiDBLite | 30 | 62 | 33 | - | – | |
| Coils | 72 | 103 | 32 | - | – | |
| ProSiteProfiles | 80 | 445 | 366 | 114.299 | ||
| Pfam | 88 | 439 | 352 | 2.7E-175 | ||
| Gene3D | 94 | 435 | 342 | 1.8E-156 | – | |
| Gene3D | 286 | 402 | 117 | 1.8E-156 | – | |
| MobiDBLite | 445 | 470 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi3g1v0018200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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