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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0021300 |
| Transcript ID | LotjaGi3g1v0021300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT3G16350.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|G7II01|G7II01_MEDTR MYB-like transcription factor family protein; Found in the gene: LotjaGi3g1v0021300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2211959..2216134) extracted from Lotus japonicus Gifu genome v1.2.
CTGGAACCTTAACCGTGATTAAATCCCGAATCTACCTATATCCAAAGGGTGATTGATACGGACGGGTGTTTATAGAAAAA AAAAAAAGTTATCACAAAATGATTATTTATTTATTTATTTATCTTCCATTTTCATTTTCATATTTTTTGAAAGTTGATTT TCTATTATTATAATATCTATATTTCTATCACGTTCTTCATCATCTTCTTCTTCTTCCTCTTCTCTCGAACCCTGTGCTGT GATTGCTCTTCTTCTTCTTCTTCGTCGACGACGACCGAGTCACGCGGCGGGGGAATCGGCATGGGTCGACGGTGCTCCCA CTGCAGCAAAGAGAACCACAATTCCCGAACCTGCCCCTCCCGCGGCGGTGGCGGTAGCGGTGGTGGTGGTGGCGGAGTGA AGCTTTTTGGGGTGAGGCTAACGGATGGACCGATTATCAAGAAGAGCGCTAGCATGGGGAGCCTCACCCTCTCCTCCGCT CATCACCATTATTCTTCTTCCTCTGACCCGCCTCATGAGCCCGACGAGTACTTGTCCGATGACCCTGCCCATGCTTCCAC CTTCGCTAACCGCCGTGGAGAAAGGAAGAAAGGTAACCGCTCAATCAATCACCCTTATCAATTTTGTTCTCATTCAAATT ACATTTCTGTGTTTTTTTCTGCTTCATTGTTAATTTTTCTTCAAATTTGCATGTTTCTCTGCTTTTATATGATAATTTTT GTGAAACAATGTGAATATTGAGATGGGAGTTTTCTGGTGTTTATGGTGATGAAGAATCAATTTGGTGGTGGATGATGATC ATGGAGGGTAAACCACACATTTTTACTGTTGTGAGATTTGGTTTTGAATGGCTGGAAATGAAATCTAGTGTTGTTTTTTG TTTTTTATGGTTGTCCCAGTTCATAAATGATGTTTGTGAATTTAATGAGATGCTTTTTTCTTTTTGTTTGTTTGTTTCTA TTCCCCTTATCTTGTGATGGTGGTTTTCTTGGTTCAAAATTTATGGAACACTCAATCTTATGTTGGTCCTGCTGTGTGGG CAATGATGGCATTTAATGTCATTATTCATGAGCTGAGTAGTGATTTGGATGAATGCCAAGCATTTAAATTTTAAATGCAG TGTGCATAATGTCATCCTAAGTTTTGAGACTGTTGAGGGTCGTAGCGGTTGAATTTTATAATAATGGTGCCCAACTAGGG AATGTTGATGTTGATAATTAGTGTTATAGCATGTTTGGATCAACTTCTCTTTTCTCAGAATCAATTCTGAAACCCACAAG CTGAACATTGATTCTGCCTTCAGAATCAATTTTTGAAGGATTTCAAACATGCACTTAACTATGCTTTCTTCCATTAACAA GGGGGTGGGTGTGGAAAAATGTAGACTTCAGGGTGACTAAACTTAATTTCTGGATAAGCAGTAACCTCAGCATCCTTTAA TGTGCAATAAATCAAAGTGATTCACAAAAAAAAGTGTAACTCTGCTATTTAAAATTACTGGCCTTTCAGTCTTAAGGCAT CCATTGACACAGGGCTCCTGATTTTTTTTGCTTGATTAGAATTGCATCCCTTTCTAACACCAGAAGCAAATCAATCAATA CCCTTAGGGGTTTAACTACTGTAAGAACAATTGTGTGTATAAATTTTCCGTATTGATTAAGGTTCAATTTTTCAGTGTTT TATATCTTTCTAAAACATTTTTTTAATAATCTTCCTATTTTTAAATAAAGTATTATTCAAATCTTGACACCTGAATACAT ATGCGCAGGTGCAGTAATTGTTGTTTCTGTCTTTAAGACAATAGAATCATGATTTTTTTTCGTTTTGTCACCTTATGATA GCAGTCATTACTCATTTATTAGTTTACTGGGAAAATTATACAGGGGTAAAAGCAAGTGGTTATGGTAGTTTGTAAGGAAA ACTTTTCTATACACTCCTGATTGTTGGCCGATTTTGAGCCAGCATCATTGGTTATTTGCTATGTATCTTAAGGTGGTGGT GTATAACTATCTTTTGCTGATGCATGTCATTGATGAGTTTGAATATTCTACAAGCCTTAATTTAATTTGGTGCCCCTTTT AGGGGAATTTTTTACTACTTGTAATCTTTGACTCATGCATGAGGATATCTGGTTCTAGTCCCTCTAAGTCACACCCATTA TCCTACCTAGAGTTATTGCGTCCTTGCCTACCTTTTTTTTATTTTTTATGTCAGAGCCTCTCATTTTTTTCTGCTTTGGA CAAGTATCCAAAGATACGTGCCTACATTGGATTGTTATACTTTATATCGAGCACAGTTGGTTCATTAAGCAGGCTGAGTA GGGAGTAATTTGGTGTCTCTTGTGATTGGATTACTTTATTCAATATGCCTTTTTGTGTGTGTTTAGGTGTTCCATGGACT GAAGAAGAACATCGACTGTTCTTAATTGGTCTCCAGAAGTTGGGCAAAGGAGATTGGCGTGGGATAGCACGTAATTTTGT TGTCTCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAATACTTTATCCGGCAGAGTAGTGCTACCAGGAGAAAGA GACGTTCAAGCCTTTTTGACATGGTTACAGATAGGGTTAGTCTTCATTCGTCATACCTGGTTAAGCATTTTTCACGCGCA CTTCCTTATTTTACATGTAGTCTGACCAAAAGGGAATCAGTATTGTCCTTGGTTGTACATCAACACCAGTCTATAAACAA CAACAACTACAAAAGCCTTATCCCAGTATAAGCAACTTAATACTTATCAACATTTCAAGTTTCTATTTTACTATGTGCCA TGTGAATCCATTTTAACATAGTGTATATATAAGGACAAGAGAAATATGTTGATATATTCTTTGATATTTTTTATGATATG ATGACAGCTTAATTGTGTTGGATTTCTTAAAACCAGTTCTTGCTTTAGTAGACAAACTTTTCTATTACTCTGAGACATTC ACAGAAACCTATATTTTCTAATGAAAGCAAATGGCATTGTCCTCGTTATAGCTGGGCATTCACTATGACTTATGTTTGAT GAGTATTATGCAGTCTTTTCCTTTCTACTTTTTCTCTTTCCCCTCTTGCTAACTGTTTATTCAATATATGCCAGTCTTCT GATCCACCTTCAGTGCCAGAAGAACAAGTACTACTTCCACCTTCGGAAAACTCACAACCTTGTAATGGAAAATCACAGCC TTCATTAAATCTCTCTCTCAAGTCAGAATTTGAACCCATGGAAACTACTACTGAAGAACATGTGGAGGAAGACCCCTATG AAACTCAAGAAAATGGATCGACACCAAAGACTCCTGGGTTCTTTCCAGCTTATGTGCCTGTTCCATTTTCCATTTGGCCA TCAATCGCAGCTCCTTGTGAAGAAGTTAACAGAGGAGTGACATTTCATCATGAGATCTTGAAGCCAATCCCGGTCATCCC TAAGGAACCTGTCAATGTTGATGAACTTGTGGGATTGTCTCATCTGAGCATTGGGGAAACACAGGTACGTGATCGAGAGC CTTCCCCACTTTCCTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCGGTTAGTAGTTCG GATTTAAACAGTGGCAAGAACAGCGCCATACAAGCAGTCTGAGCTTTTGAAGTCCTGTGAAGACAACAGTAATTATTAAG CCTTCTTTTGGTCATCTCTGGTGAAGGCATCAGTAATTAAGCCTTCTTCTGGTCATCTTTTCATTTGTTCTATCATATAT AATTTTTTTTTCTTTCTTCTGAGCCATGATAGTGTTTAATCTTCCAAGTGGTAGGAAGTGTTACATGGTGGTATGTAGCT CAGGTTAGATTCATTCTTGGCTAATATTTATTCTTTCTAACTGTAATCAATTGAAGATTAAATAATGAAATGGCAAGGCC CAAGAGGTCCCTGTTCCTCTAGGTTTGGTTATAATAGTTGGCTAGCCAGCACCCTTTGTATTACTGCCTGCTCCTGCAGT CCTGGAGTGGATGCATTGTATGACTATGATGTAGCCATTTTTGTGTATTGGGGGTTGTGTTAATTGATTTTCACATCATA TTTGCCGGTATAAGGATTCTTCTCATGTTGAAATTGTGTTTATCTCTGTTTTTTTATGTACTAAATAGATGAGACTTTTT GATTATTTATGAAAAG
CDS sequence (LotjaGi3g1v0021300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGACGGTGCTCCCACTGCAGCAAAGAGAACCACAATTCCCGAACCTGCCCCTCCCGCGGCGGTGGCGGTAGCGG TGGTGGTGGTGGCGGAGTGAAGCTTTTTGGGGTGAGGCTAACGGATGGACCGATTATCAAGAAGAGCGCTAGCATGGGGA GCCTCACCCTCTCCTCCGCTCATCACCATTATTCTTCTTCCTCTGACCCGCCTCATGAGCCCGACGAGTACTTGTCCGAT GACCCTGCCCATGCTTCCACCTTCGCTAACCGCCGTGGAGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACATCG ACTGTTCTTAATTGGTCTCCAGAAGTTGGGCAAAGGAGATTGGCGTGGGATAGCACGTAATTTTGTTGTCTCAAGGACCC CTACTCAAGTAGCAAGTCATGCCCAGAAATACTTTATCCGGCAGAGTAGTGCTACCAGGAGAAAGAGACGTTCAAGCCTT TTTGACATGGTTACAGATAGGTCTTCTGATCCACCTTCAGTGCCAGAAGAACAAGTACTACTTCCACCTTCGGAAAACTC ACAACCTTGTAATGGAAAATCACAGCCTTCATTAAATCTCTCTCTCAAGTCAGAATTTGAACCCATGGAAACTACTACTG AAGAACATGTGGAGGAAGACCCCTATGAAACTCAAGAAAATGGATCGACACCAAAGACTCCTGGGTTCTTTCCAGCTTAT GTGCCTGTTCCATTTTCCATTTGGCCATCAATCGCAGCTCCTTGTGAAGAAGTTAACAGAGGAGTGACATTTCATCATGA GATCTTGAAGCCAATCCCGGTCATCCCTAAGGAACCTGTCAATGTTGATGAACTTGTGGGATTGTCTCATCTGAGCATTG GGGAAACACAGGTACGTGATCGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTC CATGCAAATGCTCCGGTTAGTAGTTCGGATTTAAACAGTGGCAAGAACAGCGCCATACAAGCAGTCTGA
Protein sequence (LotjaGi3g1v0021300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRCSHCSKENHNSRTCPSRGGGGSGGGGGGVKLFGVRLTDGPIIKKSASMGSLTLSSAHHHYSSSSDPPHEPDEYLSD DPAHASTFANRRGERKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSSATRRKRRSSL FDMVTDRSSDPPSVPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEFEPMETTTEEHVEEDPYETQENGSTPKTPGFFPAY VPVPFSIWPSIAAPCEEVNRGVTFHHEILKPIPVIPKEPVNVDELVGLSHLSIGETQVRDREPSPLSLKLLGEPSRQSAF HANAPVSSSDLNSGKNSAIQAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 1 | 342 | 342 | 4.4E-138 | – | |
| PANTHER | 1 | 342 | 342 | 4.4E-138 | – | |
| MobiDBLite | 60 | 83 | 24 | - | – | |
| MobiDBLite | 66 | 80 | 15 | - | – | |
| ProSiteProfiles | 93 | 149 | 57 | 21.183 | ||
| SUPERFAMILY | 95 | 150 | 56 | 5.76E-17 | ||
| TIGRFAM | 96 | 148 | 53 | 9.9E-19 | ||
| SMART | 97 | 147 | 51 | 2.6E-10 | ||
| Gene3D | 99 | 150 | 52 | 1.4E-15 | – | |
| CDD | 100 | 145 | 46 | 2.03276E-9 | ||
| Pfam | 100 | 144 | 45 | 7.0E-11 | ||
| MobiDBLite | 156 | 233 | 78 | - | – | |
| MobiDBLite | 180 | 207 | 28 | - | – | |
| MobiDBLite | 322 | 342 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0021300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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