Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0023700 |
| Transcript ID | LotjaGi3g1v0023700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipid transfer protein; TAIR: AT2G44290.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|O64864|YLS3_ARATH Protein YLS3; TrEMBL-Plants: tr|A0A1J7HDZ3|A0A1J7HDZ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2618335..2619749) extracted from Lotus japonicus Gifu genome v1.2.
GGATGATTAAAAAGAATTACAAATATCAAGTTTGTCATATCGCATCTAACTCTTTTCTCTCCTTTTTTTTGGGATTACTT TTCAGCATCTCTAAATGAGTTCCAAAAGGGCAATGAATATGAATCTAGCACTCTCCTCTACCTTGCTACTGCTCCTTTTG GTTGGTTTTGCAAGCTCAAACCTAAACCAAGACACAGCAGAATGCTACAACAAACTCATTGGTATAACATATTGCCTTCC CTATGTCATGGATCAAGCCAATGCCCCACCCAAAGATTGCTGCACTGGCATCAAAGAGATTGATCACAACGGCAAGAGAT GCCTCTGTTTACTCTTCAAAGACGTGCAATTCAATGTCCTCCGTGCTCTCAAGTTACAAGGTGCTTGTAAAACACCCGTA AACTTTACTCAGTGTGTTGGTGAGTATCAATTAATCTCCATTAATCTATCATGCTTTGTTCCTTTTTTGTGCTCGTTCTG CCTTCAATTCAATCAAAGTTTAATGATATGGTGTTGCAGATGTTTTGCAATTGGCACCTAAATCTCGAGAAGCTAAAGTA TTTGAGGGATATGACAAAGGCATAAGCCTAAACTTTTCCACCCCAGCTCCCTCTCCCAGTCGTAAGATATATATTATTAT TTGATTTTTGTTAAAGAATGTTAGAGCATGTTTGGTTTAAAGTAACGCAATTTATGTTTAGTCATGTTTAACATAAGAGT GATTTACATTTTTTATCGCAAAATAATAGAATTGTATTGTGAGAAGAACTAAAATCACTTTCATGTTAACTTGGAAGCTT GGTTTTTCTACTTTAGCCTTAACTGATTTTCATCATGAAGTGAAGTGCTTTTAAGAACCTCACCCGAATATGTTTTGATG ATGAAATTAACGTTATAGAATTAGAAGTGTTTCTGTAGATGAATAATGTGATTATGTGAAACAAAACATATAGTTACTTC GTTTGTCTCTTCTGTTCTGTTTTTGTAACTCTGGTTTTGCTTTACATTTTTTTCTCTTAACATTGTGGGGTTGAAATTGA AAACCTACTGCAGCTAGTGTAGCCACTGTTAATGCTGGCAATGGAACAAGCACAAGCACTCAAGATAAGAACGGTGTGTG GGGAAAGAGATGGCTGGTAGTGAAGGTGCTATGTTTTATTTTTCCATTTGTTTTCATCTCTCATTTCCTCTTCTAGTCAA GAGGTCAAAGATGTATTATGTATAGGAGGATGATGTACCATGATACAAGATTACTCTTTTGCTATATATACGCACATGGT GGTTGTGAATGCAATTCCTTAAATATCATAAATTTAGAACAAGATGAATGTTGTATTGTCTCTTTCTCTGATTACTAGTG TGTCCATCCTCAGTAGTCTGTATGATTAATTTCCCAACTAATGGATTAATTCAAG
CDS sequence (LotjaGi3g1v0023700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCCAAAAGGGCAATGAATATGAATCTAGCACTCTCCTCTACCTTGCTACTGCTCCTTTTGGTTGGTTTTGCAAG CTCAAACCTAAACCAAGACACAGCAGAATGCTACAACAAACTCATTGGTATAACATATTGCCTTCCCTATGTCATGGATC AAGCCAATGCCCCACCCAAAGATTGCTGCACTGGCATCAAAGAGATTGATCACAACGGCAAGAGATGCCTCTGTTTACTC TTCAAAGACGTGCAATTCAATGTCCTCCGTGCTCTCAAGTTACAAGGTGCTTGTAAAACACCCGTAAACTTTACTCAGTG TGTTGATGTTTTGCAATTGGCACCTAAATCTCGAGAAGCTAAAGTATTTGAGGGATATGACAAAGGCATAAGCCTAAACT TTTCCACCCCAGCTCCCTCTCCCAGTCCTAGTGTAGCCACTGTTAATGCTGGCAATGGAACAAGCACAAGCACTCAAGAT AAGAACGGTGTGTGGGGAAAGAGATGGCTGGTAGTGAAGGTGCTATGTTTTATTTTTCCATTTGTTTTCATCTCTCATTT CCTCTTCTAG
Protein sequence (LotjaGi3g1v0023700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKRAMNMNLALSSTLLLLLLVGFASSNLNQDTAECYNKLIGITYCLPYVMDQANAPPKDCCTGIKEIDHNGKRCLCLL FKDVQFNVLRALKLQGACKTPVNFTQCVDVLQLAPKSREAKVFEGYDKGISLNFSTPAPSPSPSVATVNAGNGTSTSTQD KNGVWGKRWLVVKVLCFIFPFVFISHFLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 7 | 188 | 182 | 7.2E-53 | – | |
| PANTHER | 7 | 188 | 182 | 7.2E-53 | ||
| Phobius | 11 | 22 | 12 | - | – | |
| Pfam | 18 | 107 | 90 | 5.0E-11 | ||
| Phobius | 23 | 26 | 4 | - | – | |
| Phobius | 27 | 168 | 142 | - | – | |
| Gene3D | 34 | 107 | 74 | 5.6E-9 | – | |
| SUPERFAMILY | 36 | 109 | 74 | 2.78E-13 | ||
| CDD | 47 | 99 | 53 | 9.70603E-9 | – | |
| MobiDBLite | 138 | 159 | 22 | - | – | |
| TMHMM | 169 | 188 | 20 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 189 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0023700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…