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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0023700 |
| Transcript ID | LotjaGi3g1v0023700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipid transfer protein; TAIR: AT2G44290.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|O64864|YLS3_ARATH Protein YLS3; TrEMBL-Plants: tr|A0A1J7HDZ3|A0A1J7HDZ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2620933..2622557) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTTCTCTCCTTTTTTGATATTACTTTTCAGCATCTCTAAATGAGTTCCAAAAGGGCAATAAATATAAATCTAGCACT CTCCTCTACCTTACTGCTGCTCCTTTTGGTTGGTTTTGCAAGCTCAAACCTAAACCAAGACGCAGCAGAATGCACCTACA AACTCATTGGTATATCTTATTGCTCTCCCTATGTCTTTGATCAAGCCAATGGCGCCCCATCCAAAGATTGCTGCACTGGC ATCAAAGAGATTGATCACAACGGCAAGAGATGCCTCTGTTTACTCTTCCAAGACGTGAGATTCAATGTCCTCCGTGCTCT CAAGTTACCAGGTGCTTGTAAAACACCCGTCAACTTTACTCAGTGTGTTGGTGAGTATCAATCTCCATTAATCTATCACC CTTTGTTCCTTTTTTGTGCTGGTGCTGCATGCCTTCAATTCAATCAAAGTTTGATGATATGTTGTTGCAGATGTTTTGCA ATTGGCACCTCAATCTCGAGAAGCTAAAGTATTTGAGGGATATGACAAAGGCATAAGCCTAAATTTTTCCACCCCAGCTC CCTCTCCCAGTCGTAAGATATATATTATTATTTGATTTTTGTTAAAGAATGTTAGAGCATGTTTGGTTTAGTTTAGTGTT ATGGGGAGTTATTTTGGATAGAATTGATTGAGACGAAATTAGTAATGGTGAAAAAAAGTTTAAAGTAACGCGATTTATGA TTAGTTATGTTTAACATAAGAGCGATTTTCATTTTTTATCGCAAAAGAATAGAAATGTATTGTGAGAAGAAGTAAAATCA CTTTCATGTTAACTTGGAAGCTTGGTTTTTTTGCTTTGGCCTTAATGTGATTTTCATCATGAAGTGAAGTGCTTTTAAGA ACCTCACCCGAATATGTTTAATGTTTTGATGATGAAAAATAATGTTAGAGAATTAGAAGTATTTCTGTGGATGAATAATG TGATTATGTGAAACAAAACATATAGTTACTTCATTTGTCTCTTCTGTTCTGTTTTTATACACTCTGGTTTTGCTTTACAT TTTTTTTTCTTCTTAACATTGTGGCTGAAATTGAAAACCTACTGCAGCTAGTGTAGCCTTTGTTAATGCTGGCAATGGAA CAAGCACAAGCACTCAAGATAAGAACGATGTGTGGGGAAAGAGATGGCTGGTAGTGAAGGTGCTATGTTTTATTTTTCCA TTTGTTTTCATCTCCCATTTCCTCCTTCTAGTCTGAACCATTATCAAGAGCTCATAGCTTCAATAGTAGGATGTATTGAT ATTTGTGTATATTTATTACAAAGTTTCGTACGTTCTACTATGAATAATGATATGTCCTTGTTCCGGTAAGAATTCAAATA AGAATGCTGGCTTTGACTCCTTCTTATTTGTTCCCATTGTCGGCGGAGTACGTTAAGTGTGAGTACCTGCAAGGCACTAC GACACACAAATTAACAAGTTGAATGAGAAATAGAGATTATGACTAGACATATAATGTGTACATTTAAGGAATAATGATAT GTTCTTCTATTTTATCTTCTTAAAATATTTTAAGATATCAAATGCATTTTAATTTTGTATTCGATACATTTAATAGAATG ATGTATAGGAGGATGATGTACCATG
CDS sequence (LotjaGi3g1v0023700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCCAAAAGGGCAATAAATATAAATCTAGCACTCTCCTCTACCTTACTGCTGCTCCTTTTGGTTGGTTTTGCAAG CTCAAACCTAAACCAAGACGCAGCAGAATGCACCTACAAACTCATTGGTATATCTTATTGCTCTCCCTATGTCTTTGATC AAGCCAATGGCGCCCCATCCAAAGATTGCTGCACTGGCATCAAAGAGATTGATCACAACGGCAAGAGATGCCTCTGTTTA CTCTTCCAAGACGTGAGATTCAATGTCCTCCGTGCTCTCAAGTTACCAGGTGCTTGTAAAACACCCGTCAACTTTACTCA GTGTGTTGATGTTTTGCAATTGGCACCTCAATCTCGAGAAGCTAAAGTATTTGAGGGATATGACAAAGGCATAAGCCTAA ATTTTTCCACCCCAGCTCCCTCTCCCAGTCCTAGTGTAGCCTTTGTTAATGCTGGCAATGGAACAAGCACAAGCACTCAA GATAAGAACGATGTGTGGGGAAAGAGATGGCTGGTAGTGAAGGTGCTATGTTTTATTTTTCCATTTGTTTTCATCTCCCA TTTCCTCCTTCTAGTCTGA
Protein sequence (LotjaGi3g1v0023700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKRAININLALSSTLLLLLLVGFASSNLNQDAAECTYKLIGISYCSPYVFDQANGAPSKDCCTGIKEIDHNGKRCLCL LFQDVRFNVLRALKLPGACKTPVNFTQCVDVLQLAPQSREAKVFEGYDKGISLNFSTPAPSPSPSVAFVNAGNGTSTSTQ DKNDVWGKRWLVVKVLCFIFPFVFISHFLLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PANTHER | 8 | 192 | 185 | 3.2E-51 | – | |
| PANTHER | 8 | 192 | 185 | 3.2E-51 | ||
| Phobius | 11 | 22 | 12 | - | – | |
| Pfam | 18 | 108 | 91 | 1.3E-11 | ||
| Phobius | 23 | 26 | 4 | - | – | |
| Phobius | 27 | 169 | 143 | - | – | |
| Gene3D | 34 | 108 | 75 | 3.4E-10 | – | |
| SUPERFAMILY | 35 | 110 | 76 | 1.44E-13 | ||
| SMART | 47 | 108 | 62 | 0.0074 | ||
| CDD | 47 | 100 | 54 | 7.12867E-9 | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 170 | 191 | 22 | - | – | |
| Phobius | 192 | 192 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0023700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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