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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0027500 |
| Transcript ID | LotjaGi3g1v0027500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G13890.2 myb domain protein 26; Swiss-Prot: sp|Q9SPG3|MYB26_ARATH Transcription factor MYB26; TrEMBL-Plants: tr|A0A1J7HRE4|A0A1J7HRE4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0027500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2983884..2986029) extracted from Lotus japonicus Gifu genome v1.2.
CCATTTTCTGCTCACACACACCATTCTTTTCACACTTTTATATAACCTCTTCAAACCTAGGGCTATAGCTAGCTAGAGCC TATAGCTTTGTGATCCCTTTCATCTTTGTTTCTTTTTTGATTTTTGATATAATACCAAAACTGTTCTTTGTGTTTTCCCA TTGGTTTGTACTAGCTAGTGCCTTGACACAATCATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCT TTGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACTACCTATGGACATGGTTGTTGGAGTTCTGTCCCAAAAC TTGCAGGCAATCATTACATTATAACCCTTTATATATTCTCTCTTTGTTTTCATTTAATTTCTTCATTCTTTGGTTCTTCT CAAATTAAGCCTTATTCTCATGAGCTTCTTCCTATGTAATGTAAGTGCAGGACTTCAAAGGTGTGGAAAGAGTTGCAGAT TAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCCCTCATCATAGAACTT CATAGTATTCTAGGCAACAGGTACATATTGGTAGTGGTAGCTAAGTGTTTTTTTTCCTTCTTAATTTTCTTCCTTGATGT TTACATGAATGTTTGAAAATTCTCCTACAATCTGAAAACAAAATCAATTTTGGGAAAAATGCATCTAAGTCACTTACGAA TTCCAAAATTATTTTCTGAGAAAAGAGAACTTCATCAAAACATATGCTATACATGATCAACATCTCAACATTATACATCA AAAGGTTTTTCTTTTCTTTATTTACTTTTCTGAACAAGAGAGTTTGATTGGACAGGTGGGCTCAAATTGCCAAGCACCTA CCAGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCCAGCATAAAGAAGAAGCTACTTTCTCATGATGTTGTTCC TTCTATATCCTCCACATTTTCTGATTTTCATGGACCAGGCAATGGCTCCTTGGAAAGTTTCTTCCCTTTAACTGATCACA ACCCTATGATCCTAAACCCCCACCATAATCACCTTGACCAGCTATACCTTCCCTTTCCACCGCCAATCCTACCAAGTTTT GATCAGAATGAGAATATCAAGATAGACATTAACAATTACAATGCCAATTTCCTACATATTCAGAATCCAATGCCACAATC AGTACCAATATCCAATATTCCATCTTCTTTTGAAGATACATGGTCATTGGTTCATCTTAACCCAACTCAAGAAAACCAAA TTGCCAAAAGTGACACCACCCCACATTACATTATTGAGAACTACATCAATCCAAGTACATGGCAGCACTATGAAAGTCAG TTGGTGGAACCAATTCTGCCAAACATCTGTGAGGAAATTAAGGATAAAGTTTTTAGCCAATCATTTTCTTCTGCTTCACA AGAATATGAGGCTCTTGCAAAAGTTCAGTGTTTTACACCTGCCAATTGTGCACAAGATCAAATTGTAGCAGTCAATCAAG TGGAGGACATTGGTGCCCTTATGCCATCGTTGCCATCCTCAACAACATCTTCATCACCAGCAGCATCATTCTATCAAGCA GACAAAGTACTCACAAAACCTACCATTCCTTCAACTTGGGAGTCTTGAACTTTTTCTTTTTGTTTAATACAGGCATCCTC CTCAGAGTCAATTCTGTTCAAGCTGAAGTATCTATATTTTGGTGAGACTAGTTCTCCAAATGCAGTTATTTTTCAAACAC AAGACTCAAATCTGAAATTCATACACAAAACTCATATTTGAAACCTCATCTGAGGGAAATCAATCAAACATGTACCGAGT CTTGAACATTAGTACTGCATTTATAGTAGGTTAATTAATATTCTATGTGTATATAATTGAGCAGTGGGGGGAGTACCTAT ATATCTGATGAGATCAATATTGATTCCTTGCATTTAATTATCTCTTGAACTTTTCCAATAAGAGGGTGTGTAGATTCCTA TTGGCAAACCTGAGCCTTGCTAGTTCAGGCTGTTTCATTAATCCATGCTTGCTGCAGTTCCATTAATATGGTTTGGTTCT TTCACATGTTTGTTGACTAAAAGTATCAGTTTGTGTATGATTTCTTTGATCTTTTGTGAAGCACCG
CDS sequence (LotjaGi3g1v0027500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCTTCCTATGTAATGTAAGTGCAGGACTTCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCT AAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCCCTCATCATAGAACTTCATAGTATTCTAGGCAACA GGTGGGCTCAAATTGCCAAGCACCTACCAGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCCAGCATAAAGAAG AAGCTACTTTCTCATGATGTTGTTCCTTCTATATCCTCCACATTTTCTGATTTTCATGGACCAGGCAATGGCTCCTTGGA AAGTTTCTTCCCTTTAACTGATCACAACCCTATGATCCTAAACCCCCACCATAATCACCTTGACCAGCTATACCTTCCCT TTCCACCGCCAATCCTACCAAGTTTTGATCAGAATGAGAATATCAAGATAGACATTAACAATTACAATGCCAATTTCCTA CATATTCAGAATCCAATGCCACAATCAGTACCAATATCCAATATTCCATCTTCTTTTGAAGATACATGGTCATTGGTTCA TCTTAACCCAACTCAAGAAAACCAAATTGCCAAAAGTGACACCACCCCACATTACATTATTGAGAACTACATCAATCCAA GTACATGGCAGCACTATGAAAGTCAGTTGGTGGAACCAATTCTGCCAAACATCTGTGAGGAAATTAAGGATAAAGTTTTT AGCCAATCATTTTCTTCTGCTTCACAAGAATATGAGGCTCTTGCAAAAGTTCAGTGTTTTACACCTGCCAATTGTGCACA AGATCAAATTGTAGCAGTCAATCAAGTGGAGGACATTGGTGCCCTTATGCCATCGTTGCCATCCTCAACAACATCTTCAT CACCAGCAGCATCATTCTATCAAGCAGACAAAGTACTCACAAAACCTACCATTCCTTCAACTTGGGAGTCTTGA
Protein sequence (LotjaGi3g1v0027500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFFLCNVSAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKK KLLSHDVVPSISSTFSDFHGPGNGSLESFFPLTDHNPMILNPHHNHLDQLYLPFPPPILPSFDQNENIKIDINNYNANFL HIQNPMPQSVPISNIPSSFEDTWSLVHLNPTQENQIAKSDTTPHYIIENYINPSTWQHYESQLVEPILPNICEEIKDKVF SQSFSSASQEYEALAKVQCFTPANCAQDQIVAVNQVEDIGALMPSLPSSTTSSSPAASFYQADKVLTKPTIPSTWES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 27 | 27 | 4.205 | ||
| Gene3D | 7 | 32 | 26 | 1.2E-5 | – | |
| PANTHER | 10 | 315 | 306 | 3.4E-70 | – | |
| PANTHER | 10 | 315 | 306 | 3.4E-70 | ||
| SUPERFAMILY | 13 | 82 | 70 | 2.78E-20 | ||
| ProSiteProfiles | 28 | 82 | 55 | 25.209 | ||
| SMART | 32 | 80 | 49 | 1.5E-15 | ||
| Pfam | 33 | 75 | 43 | 1.0E-13 | ||
| CDD | 35 | 75 | 41 | 8.44756E-12 | ||
| Gene3D | 35 | 82 | 48 | 2.8E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0027500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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