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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0027500 |
| Transcript ID | LotjaGi3g1v0027500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G13890.2 myb domain protein 26; Swiss-Prot: sp|Q9SPG3|MYB26_ARATH Transcription factor MYB26; TrEMBL-Plants: tr|A0A1J7HRE4|A0A1J7HRE4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0027500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2983888..2986072) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTGCTCACACACACCATTCTTTTCACACTTTTATATAACCTCTTCAAACCTAGGGCTATAGCTAGCTAGAGCCTATA GCTTTGTGATCCCTTTCATCTTTGTTTCTTTTTTGATTTTTGATATAATACCAAAACTGTTCTTTGTGTTTTCCCATTGG TTTGTACTAGCTAGTGCCTTGACACAATCATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTTTGG TCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACTACCTATGGACATGGTTGTTGGAGTTCTGTCCCAAAACTTGC AGGCAATCATTACATTATAACCCTTTATATATTCTCTCTTTGTTTTCATTTAATTTCTTCATTCTTTGGTTCTTCTCAAA TTAAGCCTTATTCTCATGAGCTTCTTCCTATGTAATGTAAGTGCAGGACTTCAAAGGTGTGGAAAGAGTTGCAGATTAAG ATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCCCTCATCATAGAACTTCATA GTATTCTAGGCAACAGGTACATATTGGTAGTGGTAGCTAAGTGTTTTTTTTCCTTCTTAATTTTCTTCCTTGATGTTTAC ATGAATGTTTGAAAATTCTCCTACAATCTGAAAACAAAATCAATTTTGGGAAAAATGCATCTAAGTCACTTACGAATTCC AAAATTATTTTCTGAGAAAAGAGAACTTCATCAAAACATATGCTATACATGATCAACATCTCAACATTATACATCAAAAG GTTTTTCTTTTCTTTATTTACTTTTCTGAACAAGAGAGTTTGATTGGACAGGTGGGCTCAAATTGCCAAGCACCTACCAG GAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCCAGCATAAAGAAGAAGCTACTTTCTCATGATGTTGTTCCTTCT ATATCCTCCACATTTTCTGATTTTCATGGACCAGGCAATGGCTCCTTGGAAAGTTTCTTCCCTTTAACTGATCACAACCC TATGATCCTAAACCCCCACCATAATCACCTTGACCAGCTATACCTTCCCTTTCCACCGCCAATCCTACCAAGTTTTGATC AGAATGAGAATATCAAGATAGACATTAACAATTACAATGCCAATTTCCTACATATTCAGAATCCAATGCCACAATCAGTA CCAATATCCAATATTCCATCTTCTTTTGAAGATACATGGTCATTGGTTCATCTTAACCCAACTCAAGAAAACCAAATTGC CAAAAGTGACACCACCCCACATTACATTATTGAGAACTACATCAATCCAAGTACATGGCAGCACTATGAAAGTCAGTTGG TGGAACCAATTCTGCCAAACATCTGTGAGGAAATTAAGGATAAAGTTTTTAGCCAATCATTTTCTTCTGCTTCACAAGAA TATGAGGCTCTTGCAAAAGTTCAGTGTTTTACACCTGCCAATTGTGCACAAGATCAAATTGTAGCAGTCAATCAAGTGGA GGACATTGGTGCCCTTATGCCATCGTTGCCATCCTCAACAACATCTTCATCACCAGCAGCATCATTCTATCAAGCAGACA AAGTACTCACAAAACCTACCATTCCTTCAACTTGGGAGTCTTGAACTTTTTCTTTTTGTTTAATACAGGCATCCTCCTCA GAGTCAATTCTGTTCAAGCTGAAGTATCTATATTTTGGTGAGACTAGTTCTCCAAATGCAGTTATTTTTCAAACACAAGA CTCAAATCTGAAATTCATACACAAAACTCATATTTGAAACCTCATCTGAGGGAAATCAATCAAACATGTACCGAGTCTTG AACATTAGTACTGCATTTATAGTAGGTTAATTAATATTCTATGTGTATATAATTGAGCAGTGGGGGGAGTACCTATATAT CTGATGAGATCAATATTGATTCCTTGCATTTAATTATCTCTTGAACTTTTCCAATAAGAGGGTGTGTAGATTCCTATTGG CAAACCTGAGCCTTGCTAGTTCAGGCTGTTTCATTAATCCATGCTTGCTGCAGTTCCATTAATATGGTTTGGTTCTTTCA CATGTTTGTTGACTAAAAGTATCAGTTTGTGTATGATTTCTTTGATCTTTTGTGAAGCACCGTATATTGTATAACAATTA TATACCTAGTTTCTGTACTTTACGT
CDS sequence (LotjaGi3g1v0027500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTTTGGTCACCTGAAGAAGATGAAAAGCTCATCAA CTACATCACTACCTATGGACATGGTTGTTGGAGTTCTGTCCCAAAACTTGCAGGACTTCAAAGGTGTGGAAAGAGTTGCA GATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGCTTCTCTCCTCAAGAAGCAGCCCTCATCATAGAA CTTCATAGTATTCTAGGCAACAGGTGGGCTCAAATTGCCAAGCACCTACCAGGAAGAACAGATAATGAGGTGAAGAACTT TTGGAATTCCAGCATAAAGAAGAAGCTACTTTCTCATGATGTTGTTCCTTCTATATCCTCCACATTTTCTGATTTTCATG GACCAGGCAATGGCTCCTTGGAAAGTTTCTTCCCTTTAACTGATCACAACCCTATGATCCTAAACCCCCACCATAATCAC CTTGACCAGCTATACCTTCCCTTTCCACCGCCAATCCTACCAAGTTTTGATCAGAATGAGAATATCAAGATAGACATTAA CAATTACAATGCCAATTTCCTACATATTCAGAATCCAATGCCACAATCAGTACCAATATCCAATATTCCATCTTCTTTTG AAGATACATGGTCATTGGTTCATCTTAACCCAACTCAAGAAAACCAAATTGCCAAAAGTGACACCACCCCACATTACATT ATTGAGAACTACATCAATCCAAGTACATGGCAGCACTATGAAAGTCAGTTGGTGGAACCAATTCTGCCAAACATCTGTGA GGAAATTAAGGATAAAGTTTTTAGCCAATCATTTTCTTCTGCTTCACAAGAATATGAGGCTCTTGCAAAAGTTCAGTGTT TTACACCTGCCAATTGTGCACAAGATCAAATTGTAGCAGTCAATCAAGTGGAGGACATTGGTGCCCTTATGCCATCGTTG CCATCCTCAACAACATCTTCATCACCAGCAGCATCATTCTATCAAGCAGACAAAGTACTCACAAAACCTACCATTCCTTC AACTTGGGAGTCTTGA
Protein sequence (LotjaGi3g1v0027500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE LHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSISSTFSDFHGPGNGSLESFFPLTDHNPMILNPHHNH LDQLYLPFPPPILPSFDQNENIKIDINNYNANFLHIQNPMPQSVPISNIPSSFEDTWSLVHLNPTQENQIAKSDTTPHYI IENYINPSTWQHYESQLVEPILPNICEEIKDKVFSQSFSSASQEYEALAKVQCFTPANCAQDQIVAVNQVEDIGALMPSL PSSTTSSSPAASFYQADKVLTKPTIPSTWES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 1.9E-96 | – | |
| PANTHER | 1 | 349 | 349 | 1.9E-96 | ||
| ProSiteProfiles | 9 | 61 | 53 | 18.315 | ||
| Gene3D | 11 | 67 | 57 | 7.8E-19 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 1.91E-29 | ||
| SMART | 13 | 63 | 51 | 2.0E-13 | ||
| Pfam | 14 | 61 | 48 | 5.9E-15 | ||
| CDD | 17 | 61 | 45 | 4.145E-12 | ||
| ProSiteProfiles | 62 | 116 | 55 | 25.209 | ||
| SMART | 66 | 114 | 49 | 1.5E-15 | ||
| Pfam | 67 | 109 | 43 | 1.2E-13 | ||
| CDD | 69 | 109 | 41 | 2.10639E-11 | ||
| Gene3D | 69 | 116 | 48 | 3.3E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0027500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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