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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0030400 |
| Transcript ID | LotjaGi3g1v0030400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT3G59570.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8BPQ7|SGSM1_MOUSE Small G protein signaling modulator 1; TrEMBL-Plants: tr|A0A072VBU7|A0A072VBU7_MEDTR Rab GTPase activator; Found in the gene: LotjaGi3g1v0030400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3283529..3289874) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACCGTTAAAATGTGTTTAAGACATCATAATTATCCTAATAGCCTTTGGTAAGAGTCATAAGCCCTCATCAAAACCA CCATTAAATACCACAAAGAAACGGTATTCCCCCTTTCAGACTCACCAAATGGCCACCATGCCACGACGGAGCTCCTCCTC CTCCTCCTCCTCCGCCACCAAAACCTGAAACTCCTCTCACAGATCCTCTCTCTCTCGCTACCTAACCCTAACCCTAACCC TTGCTTCATTCTTCTTACCCTTTCGATTCTCTCAAATCCTCTTCTTCTATTCGCATTGCATTGCATTTTTTGCATTGCGT TTTTGGTTTGATTCCCTTTTCTTTACCCTAATTACCTTCCATTTCAGAACCTTCCTTCATTTTTCCATTTCTCGAATAGT TTGCATTTTTTCTGCGATCGAAGCAGAGATGATCTGTTTTCGGTTGAGTTTTGGAATTAGAAATGGAATGGAATGGGATG AAGCAAGCATCATGAAATTTTAGGGTTTTTGAACTGTGTTTGTGTGTGTTTGGTTGTTGACATTGGTGGTGGTGTTTTGG AGAGCTTGGTGTTTGTGTGTGTGTGTGAGAGTCTGATGAATTGTGGTGGCGAGGAAGAGAAGCAATGGAGTTGTGGAAAA GCTGGGAGTGTGAATTTCCGAAAAGTGAGTTCGATTGTTCGCGACATTGGGGATCCTTGCCTCTCTCAGTCTCCTGTAAA GGTTGTTGTAACTGTAAGATAGACTACAAACTCTTCTGGGTTTTATTGAATTCATTTGCTTTGCTTTGCTGTGCTGTGCT TGGATTCACTTCTATGAACTGAGGAGGTGATGTTGCTTAACAAGGAAAAACAAAGTATTGTTTATGAATTGACTTGTTGA ATGATCTTTCATTGTTTATTTTTTATGGAGCAGGTGAACAGAATGCTTAAGCCAGACAAGTGGCAAGCCTTGTCTGATAG TGAAGGAAAGGTGCTTGGTTTCCGGAAGGCGCTGAAATTGATTGTGTTAGGGGTATGCTGTCATTTCTGCTCTGCTCTGT TGTGTTTTTTTTTTTTTTTACTTTTATTTGTCTATAGCATAGCATCATCTTCATCATTCTCACTCGCTGTAATCATCTTC AAATTTTGGATGCTGGGTGCTCATGAATTTAGTGCACATTGTCTTGTTTAATTGGACAGAGATGGGTGTGTATAGTAGTA ATGGTTTAAGGGGCAATGGGCTCAATTCACTTAAAGCAAAATCTTGGGTTCCAGTTGTGTAAATGGAAGAAATAGGACTT GAGAGAGTTTTCTCACCTCAAATAGGTCCTCTAGGCTCAACTTGGAGTAGTGTGGGCACAAAGTGGCTTCTGGGTACTGC TGGGGAACTCAAAAAAAAGAAAAAAAGAAGAAGAAAGCAAAGAAACTTGCCTAACTTTGTTTAATATCAACTTAGTTTAA ACTTTGTAAGGTCGGCAGTGCTTCCTATTTAGGTGTCATTAATTGGTTGCGGTGGTTGCCATTGGCTTGTTGTTCTTGAC TTTTTAATTTCAGATGTACAAAGTGAATCTTATATGACTTAGCCTTAGTGAATCTTTTAATATTATTATTTTGTAACTTT TATCCTACGGCTTGCTTAGGGTAGGTATTTTATAAATAGTAAGTATGATAAATAAAAGGCATTATATCAGGCCTTAACTT CAGTTTGTGGGTGAGTGGGATGTGCCGAACCTATTGTATATTCAGTATGCTGCCTGCACTCTTCCTATTGTCAAGTTTCA ACAAATAATTAGCTCAATCAATAAAATGTTGTTTCCAAGAGAGCATTTATAGGCTAGGCCAATCCACCCTCTAATACTGA ATTTATCCACTTAGAAAATCTGGTCTTCTTACTTCCGTAACACATTTTTCATCATAAGCTTGAGTCCATTTCACCTTTGG TATCTTGTTAAGCCGTTCTACAGCTTTTTGGATTCTCTGTTCACAATGTCAGAATAATGGCTTAAGTTTAGTCGTCTTTT TCATCAATGTAAAACGCATACATCTTTCCTTGGGAGATATCAAACATATGAATTCAAAATTGCTTTCTAAAATTGAAGCT GATATAGACATTGTTGTTCTTTTCTAATTCGTTTCACCTTTCACCCCCCCCCTCTGCCTGTTAGGGTGTAGATCCTTCAA TAAGACCTGAAGTTTGGGAGTTTTTACTAGGTTGCTACGCACTGAGCAGCACTGCTGAGTATCGAAGAAGGTTGAGAGCA GCTAGGAGGTACGGGTCCATCAACTTTCTTTGATTTATTTCTCTCTAGTAGTTTTTTTTTATCTCTAGTATTTGCTGGAT AAACATGCCTATTTTACATATAATGAATGTTAAAGCTATTGTTGTAGCCACGAAAGTCACAGTTTAGAACTTTCTAATTT CAATATTTTTGTTATGGATGAATTTAGCCGTATGTCAATGCTTGCATGAATCCATTCCTTTGGCATCTGGCAACTACTGT GTGTCAATAATTGCAAGTGTGAATGTAAAATGAATTTGGCATTCAATGGCGATATTATGTTTCAGCTAGTTTATTGAATA AATTATTACTACCTCCATTACTTTTTATCTTTCATTTTCAGGTTTTGACACTATATAAATATAATTGCTGTTCTCATTTT TATTGGAACTGTTGTTTAATTTCCTATTGCACCCTCTATCTTCTTTATTAATTCATTATATAGTAAGTGTGTAAAATAAT TTAGAATCAGGTGAAGGTAAGGGTATATAAGTGGTATAGTATTAGTAACAATTGATTTTGTCTTGAACTTTTGAAGTGAA AAAAAAATAGGAGTAAAAGTCCTCTAAAAATGTGATAAATAATTGACATCCATGATGAACTGACCTTGCAGGGAGCATTA TAGTGACCTGGTTAAGCAATGTCAAACAATGCATTCAAGTGTAGGAACTGGTTCGTTGGCATATGTTGTTGGATCCAAAG TTATGGATATGAGAACTTCATCTAAACTTGAACGGGAAATGAAAGGTAAAACATCAACTTCTAATGATAATAATATTGAA GTAGGAAAATATAATGAAAGGAGCATTATTTGTACAGAGGCAGCAAAAGAAGGCCATCATGAAAGCTCCAATGGTTCGGT TGACCTAGCCAGTTTGAGAGCAAGCACAGATGGTGCAACTTATGATTCTTATGGTCAACAAAACTGCAGTTCCCCAAATT TAGGGAGAGAAACAGATGGATCACATTGTGTGATTGATAGTCCTTTTGATTTTCCTGCTTTACCTGTGACCAATCTGTTT GAAAAGAGTGGTAAAGATAACAACTCAAGCACAGAGCATGGCAGTAAACTGTCTGCACGACATAGATTAAGATTTGATGA TGAAATGCATACCTTTCAAATCAATGACAATGTAGACTTAATTGGTGAATCAAATGGCCAACAACCACGGGGTATCTTGC ATTCCACGAACTCTGAAATTGAAGTTGCTTCACCTGATGAGGATGAACCAGAATTCCCATCGGACAATGCTGTTTATGAA GCTCAGATGGTAAATCAACTAAAAATATCAGATGTACCCCAGCCAGCAAGGATAAGTGCCGCAATGTCTCAAGAATGGCC TGTCGGTGAAGATAGAGTATCAGAATGGCTTTGGACCTTGCACAGGATAGGTATCTAAGTTGTTTAATCTATCTCCCTCT TACCATGTATTTTGATGGAGGAAGTTCATCTTTTTCTTCTTGAGGACCGCATATGTTTTATTTTGTTGTTCTTTTTTGTT AACGAGATTATTCCTTTCCAGTCGTTGATGTTGTGAGGACGGATAGTCATCTTGACTTCTATGAGGATACCAGAAATTTA GCTAGAATGTCGGATATTCTTGCTGTCTATGCATGGGTTGATCCTGCAACGGGGTATTGTCAAGGTTATGTTTTTTCCTG GGAATTTCTTGACTTCTTGCCAATGATTGTGTTCTTTTTAGGAGTCTTGTTATAGTGACTTTGGACACCGAAACTTACAT TCTTTTCACTGAATATTGGATTTTAGGTATGAGCGATTTGCTGTCTCCCTTTGTTGTAATCTTTGAGGATAATGCAGATG CTTTTTGGTGTTTTGAGATGCTTTTAAGGAGAATGGTATTTTCAAATTTGGCTTAGAGTCAACAATGTTATTTTTTTTTG CCGTGACTGACTTGTTTTGTTTCACATGTGCAGAGAGAAAATTTTCAAATGGAAGGCCCAACTAGGGTGATGAAACAGTT GCGAGAATTATGGCATATTCTTGAACTGGCAGACAAAGAAATGTTCGCACACCTGTCAAAAATTGGTGCCGAGAGCCTTC ATTTTGCATTTCGCATGTTGCTTGTTCTGTTCCGGAGAGAGTTATCTTTTAACGAGGCTCTTTCAATGTGGGAGGTTTGT GCACCATGCTTCCAAATCCATCCCACTGATTTTTTTCATGTTTTTAAAATTCAATTAAAATGTAAACCTTTACCTCAATC TTAGAGGAACAACTCTCTTGTCCACTCCTACTTAGGGAGATATGGTTGCTGGTATTACATAGAAGTGAAATATGATATTA GTTCTAAGATGAGTTGCTAGTTGCTACTGGTTCAAAAGCATGCATATCTAATTTTTCTGTTTATTTTTTAGAGTATTTAT TTGCTTTATTGTATTAAGTGAATTGAGATATGGAGACTGGCCTTTCATACCTTCATGTAATTATTGATCGTGTCTTTGGG AACATTTGTGTGATTTTTTATAAGTAAATAACAAGTTAGGGGGTTATATATATATATATATATATATATATATATATATA TATATATGACAAAGCATTGGGCTTATGAATATGCAATAGAAGTAGACCACCTATTGATAAGGTGTATCATAGACTATATA AGAAAGTGAATGATATTGAGCCAGTGCCTTTGTAATAGGAAATCAAGTATTAGTTGACAGCGAGCCTGAATTAATGTCCC AAGGTAACAGCCAGTTAGATAGGCTGTTATATCAGTTAGTTGGTTACACTCCTATAGGAGGAATGTGAGGTTAGTTAGGG AGGTGATTCTGAAGTTGTTCTTTCAGTTGTAGGCAGATTTTCTGACCTCTCGAAAGTCAGAATTGTATACTCAATTTCCA TTATTTTCAATAAGAGAATTTCTCTCTTTTCTTATCTGCTTTCTAGTCCAGTTTTATCAGTATGAAAGTAATATTCTAAA GAAAATTTCAAGAATGTTGCCTGTAATTTAGAGCGGACAGTGTTTTGTGCTATTTATTAATCAACCCTTTTGATAAATCA TTTGCTTAGTTTATCAACACATGAACGTTGTATTCCTGTGTAATGCAGATGATGTGGGCAGCTGACTTTGATGAATCCTT GGCATATGATTTAGAAGTAAATTGTCTGGAAGCGTTGGACATACATCTTCCTAGAGACTCAAGCAATGATTTAAGAGAAG AAGTTGCAGATTCTGATGATGGTAGTGTGAAGAGTGGTTCACAATCAAATCATAATGAAAATGACAATGACAATACAAAA GCCAGCCAACAGTCAAATCATGAGAACACTGATGTCTCTGTATGGGATGCCAAATTGAAGTCGCTATCATCTTATCCCTT TTGTGGCTTGGCAAGGAATATGTGGCCAAGAAATGGTAGAGTTCAAATGAGCACTATGTCCTCGTTAACAAGGAAAGAAA AGGATGAGCTAGCCATATTCTGTGTCGCAGCAATTCTTGTTTTAAACCGTCAGAAAGTCATTCGAGAAACCCACTCCTTT GATGATATGATAAAGGCAAGTGCATTGATCTTTTGTTTTTATCGAGTAATTAATTACTATTATGAAAGTCACAATTGTTA TACTCCTATTACATTGTTTTTGCTTTTTATGTTTATATTGTCTGGTGTTGAGTACCTCCTTGGTCTGGATTATGTTTTGA TCTGGAAATCTGAAGTTGGTACTTGGTAGTGTATAAGCCTTTTTTTCAGAAGTTGTATTCTGCCAAGCACTTTTTATCTT CCTGATGTTTTCCCACAATCACCCCTGTAATAACTGCATATCTTGGTGTTATTGTTTAATGAGGTTTGATGTACTCTTCG TCATAGTAGTCAATAGCGGGAAATAGCGGCGCTATAGCGGCGTAGCGGAGCGGAGCGGCTCCCTGCCGCTATTGAGATGA AATAGCGGCCAACTTCACAATAGCGGTCGTAGCGGCGCGAATAGCGACCAAAATAGCGGCAGATCGCGGCCAATAGCGGG AAATAGCGACGCTATATGAACGAAGGAGAAAATGACTCACGCCCCTTGGTTTTAAATCGTTACGAAACCTTTTTATGGGC ATGTTAGGACTTCTCAGGGCCATTAT
CDS sequence (LotjaGi3g1v0030400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAAGCCAGACAAGTGGCAAGCCTTGTCTGATAGTGAAGGAAAGGTGCTTGGTTTCCGGAAGGCGCTGAAATTGAT TGTGTTAGGGGGTGTAGATCCTTCAATAAGACCTGAAGTTTGGGAGTTTTTACTAGGTTGCTACGCACTGAGCAGCACTG CTGAGTATCGAAGAAGGTTGAGAGCAGCTAGGAGGGAGCATTATAGTGACCTGGTTAAGCAATGTCAAACAATGCATTCA AGTGTAGGAACTGGTTCGTTGGCATATGTTGTTGGATCCAAAGTTATGGATATGAGAACTTCATCTAAACTTGAACGGGA AATGAAAGAGGCAGCAAAAGAAGGCCATCATGAAAGCTCCAATGGTTCGGTTGACCTAGCCAGTTTGAGAGCAAGCACAG ATGGTGCAACTTATGATTCTTATGGTCAACAAAACTGCAGTTCCCCAAATTTAGGGAGAGAAACAGATGGATCACATTGT GTGATTGATAGTCCTTTTGATTTTCCTGCTTTACCTGTGACCAATCTGTTTGAAAAGAGTGGTAAAGATAACAACTCAAG CACAGAGCATGGCAGTAAACTGTCTGCACGACATAGATTAAGATTTGATGATGAAATGCATACCTTTCAAATCAATGACA ATGTAGACTTAATTGGTGAATCAAATGGCCAACAACCACGGGGTATCTTGCATTCCACGAACTCTGAAATTGAAGTTGCT TCACCTGATGAGGATGAACCAGAATTCCCATCGGACAATGCTGTTTATGAAGCTCAGATGGTAAATCAACTAAAAATATC AGATGTACCCCAGCCAGCAAGGATAAGTGCCGCAATGTCTCAAGAATGGCCTGTCGGTGAAGATAGAGTATCAGAATGGC TTTGGACCTTGCACAGGATAGTCGTTGATGTTGTGAGGACGGATAGTCATCTTGACTTCTATGAGGATACCAGAAATTTA GCTAGAATGTCGGATATTCTTGCTGTCTATGCATGGGTTGATCCTGCAACGGGGTATTGTCAAGGTATGAGCGATTTGCT GTCTCCCTTTGTTGTAATCTTTGAGGATAATGCAGATGCTTTTTGGTGTTTTGAGATGCTTTTAAGGAGAATGAGAGAAA ATTTTCAAATGGAAGGCCCAACTAGGGTGATGAAACAGTTGCGAGAATTATGGCATATTCTTGAACTGGCAGACAAAGAA ATGTTCGCACACCTGTCAAAAATTGGTGCCGAGAGCCTTCATTTTGCATTTCGCATGTTGCTTGTTCTGTTCCGGAGAGA GTTATCTTTTAACGAGGCTCTTTCAATGTGGGAGATGATGTGGGCAGCTGACTTTGATGAATCCTTGGCATATGATTTAG AAGTAAATTGTCTGGAAGCGTTGGACATACATCTTCCTAGAGACTCAAGCAATGATTTAAGAGAAGAAGTTGCAGATTCT GATGATGGTAGTGTGAAGAGTGGTTCACAATCAAATCATAATGAAAATGACAATGACAATACAAAAGCCAGCCAACAGTC AAATCATGAGAACACTGATGTCTCTGTATGGGATGCCAAATTGAAGTCGCTATCATCTTATCCCTTTTGTGGCTTGGCAA GGAATATGTGGCCAAGAAATGGTAGAGTTCAAATGAGCACTATGTCCTCGTTAACAAGGAAAGAAAAGGATGAGCTAGCC ATATTCTGTGTCGCAGCAATTCTTGTTTTAAACCGTCAGAAAGTCATTCGAGAAACCCACTCCTTTGATGATATGATAAA GGCAAGTGCATTGATCTTTTGTTTTTATCGAGTAATTAATTACTATTATGAAAGTCACAATTGTTATACTCCTATTACAT TGTTTTTGCTTTTTATGTTTATATTGTCTGGTGTTGAGTACCTCCTTGGTCTGGATTATGTTTTGATCTGGAAATCTGAA GTTGGTACTTGGTAG
Protein sequence (LotjaGi3g1v0030400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKPDKWQALSDSEGKVLGFRKALKLIVLGGVDPSIRPEVWEFLLGCYALSSTAEYRRRLRAARREHYSDLVKQCQTMHS SVGTGSLAYVVGSKVMDMRTSSKLEREMKEAAKEGHHESSNGSVDLASLRASTDGATYDSYGQQNCSSPNLGRETDGSHC VIDSPFDFPALPVTNLFEKSGKDNNSSTEHGSKLSARHRLRFDDEMHTFQINDNVDLIGESNGQQPRGILHSTNSEIEVA SPDEDEPEFPSDNAVYEAQMVNQLKISDVPQPARISAAMSQEWPVGEDRVSEWLWTLHRIVVDVVRTDSHLDFYEDTRNL ARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLLRRMRENFQMEGPTRVMKQLRELWHILELADKE MFAHLSKIGAESLHFAFRMLLVLFRRELSFNEALSMWEMMWAADFDESLAYDLEVNCLEALDIHLPRDSSNDLREEVADS DDGSVKSGSQSNHNENDNDNTKASQQSNHENTDVSVWDAKLKSLSSYPFCGLARNMWPRNGRVQMSTMSSLTRKEKDELA IFCVAAILVLNRQKVIRETHSFDDMIKASALIFCFYRVINYYYESHNCYTPITLFLLFMFILSGVEYLLGLDYVLIWKSE VGTW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 593 | 593 | 7.5E-180 | – | |
| PANTHER | 1 | 593 | 593 | 7.5E-180 | – | |
| Phobius | 1 | 557 | 557 | - | – | |
| SUPERFAMILY | 7 | 404 | 398 | 3.14E-42 | ||
| SMART | 28 | 469 | 442 | 1.0E-25 | ||
| ProSiteProfiles | 31 | 444 | 414 | 31.403 | ||
| Gene3D | 265 | 369 | 105 | 1.3E-11 | – | |
| Pfam | 296 | 442 | 147 | 8.7E-32 | ||
| SUPERFAMILY | 381 | 587 | 207 | 4.18E-21 | ||
| MobiDBLite | 472 | 510 | 39 | - | – | |
| MobiDBLite | 483 | 510 | 28 | - | – | |
| Phobius | 558 | 573 | 16 | - | – | |
| Phobius | 574 | 584 | 11 | - | – | |
| Phobius | 585 | 603 | 19 | - | – | |
| Phobius | 604 | 608 | 5 | - | – | |
| Phobius | 609 | 629 | 21 | - | – | |
| TMHMM | 615 | 637 | 23 | - | – | |
| Phobius | 630 | 644 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0030400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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