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LotjaGi3g1v0032100.4

Overview

Field Value
Gene ID LotjaGi3g1v0032100
Transcript ID LotjaGi3g1v0032100.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Hydroxyacylglutathione hydrolase; TAIR: AT1G06130.1 glyoxalase 2-4; Swiss-Prot: sp|Q8LDW8|GLO2D_ARATH Probable hydroxyacylglutathione hydrolase 2, chloroplastic; TrEMBL-Plants: tr|I1M574|I1M574_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0032100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:3427674..3430423) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGGTTCTTTTCTACTCCGTTGAAAACACTGCGTGGGGGAGCTAGTCGCTCGCTCAGAGTGGCTCGGTTTTGCAGTGT TGCAAATATGTCTTCCTCGTTGCAGATTGAATTGGTGAGAGCAGGTCTCTTACTGCTTTTATAAATTGTTATGGTGCAAT TGGATTAAGTATTATCGTCAAGTTGCCCAAGCTGATAATGTTTCTCAAGAAATATGCCGTAGGCCTAATTTGTGATATGT TATCATGTTTTTGAAAAAAAATTAGGTACCTTGCCTGAGGGACAATTATGCATATCTTTTACATGATGTGGATACGGGTA CAGTTGGTGTTGTTGACCCTTCTGAAGCTGTGCCTATCATAGATGCGTTGAGCAGGACAAAACGAAATTTGACATACATA CTCAACACCCACCACCATCATGATCACACTGGTGGAAATGTGGAATTGAAAGAAAAATATGGAGCAAAGGTATGGTATTT ATATCTTCTTGCTCCACTTTTTATCAATATTCTCTATGTAATTTCAGTGAATAGCATTGGAGAATAATAACAAGAGTTTG TTTGTGTTTGAAATACAACTCCCCTTGTATAGAATAGATTAGCAGTGGGGTTTACCTCTTGTCCAACTTAGCATTCATGT TTGGCCTAATAACTATGAAATTTGGCAAAATAAAGTGTTGCAAATTTGAATGGATCAGTTATTGACAGTTTGGCATATTA AGAACTTCTGTGACAAATCAAACAATTTGGAAGAGTTGATTGGAGTCTGTGATGTGTGTTTCTAAATTATGCTTACTTAA GGAAAAGATCTAGATTATCCAAAAGCAACATTTGATGTAGTTTTTATATGCTTACTCATTATACTTAGGGTAAATGTTAA CCTTTCCTTTGTTGCTAAGGTAATTGGTTCGGGAGCTGACAAGGAAAGGATCCCTGGGATTGATATCTATTTGAATGATG GTGATAAGTGGATGTTTGCTGGCCATGAGGTGCATGTAATGGACACGCCTGGTCACACCCGAGGTCACATTCATGCCCTA TTTGCAGTTTTAGTGAATCATCTTAATGTTGATTACTTGATTTTTATTAAAAGCGGCGTAGTCTTTTGTGGCTCTTTTTT TCCCTGCTAAATTTCTATTTATTTATGCTGAAGCAGGCCACATTAGCTTCTACTTTCCTGGATTTGGGGCAATTTTTACA GGAGACACTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCAGAACAGGTTGGATTGAATTGCATTTACTT TTCCACATTCATTTTAAGATTTGAGCTAGTCGTAAGTCGTTGCATCTTTGATGTCTCATAGTTTGTATATCTTGTTTTAC CCCTTTGTCTGAAGTCCTTGAAATTTTGGAATACCTTCTTAAAGGGACTAGATTGAATAATGTTGCTTTCACCCCCTTCT TTGGGGTGGAAAGAGGTGGAAGGAGGAGAGAGATAGGAAGAAAAGAAAAAGTAAGAGAGAGAAAGTATGAGATGTGATAG ATGATAAGAGGAGAGAGATAGAAATAAAATGAAAGGAAATGAGGTGTGAACATATCATTATTGGACTAAATTTGAATTGC AATTAAATGAGGACTTTGGGATAACTGGTACCCTTTTCTGCAACTCACAACCTGTGAATGTAAGATGCCTGTATAAAATA TGTTACTGTTATTTGACTTATTTCTGGAAGGCCTTATATTTGATGAGGTTAGGGGAGTCTTTTCCATAACCCATTATATG TTTTTTATTTTTAAATTGCAATCTAAGTGTACGAAAAGTTTGATTGAATCATATGTTGTGCCATTTCTTTCTGTGTTATT CAATAACAGTTATTGTCTGATTAAGAAATTAATACAACAACAACCAAAGCCTTATCTCACGAAGTGAGGTCGGCTATATG GATCACTCGATGTCCATTGCGCATGATTAAATACTTGTCTAGTTATTGTTACAATAATGCTTCCATTTTGTTCTCTGAAT ATATGTCTTTGTGAGGATGTGCACATCATACTTTTATGTCGAGAATATTGGATATTCATGAGTTATGAGAATATTGGATA TTCATGAGTAAATATGCTGATGCAATGTGTGGTTGTGAATGCAAGCCAATTCTTGCGTGTCAAGTCACTTGATAAGCCTG TAAAAGATGTTATATTTTCAATTATTTAGAATTTCATCCATGTTACAGATGCTATCTTCTCTAAGCAAGATCATGTCTTT GCCAGAAGCTACAAGTGTATACTGTGGACACGAATACACATTGGTTAGTTATTTTCTACTTTCATCCTTCATATAACTTT GTTTTCTTAGCCCAAGTGCTGCGGAATTTACATTGATGCTTTGGGTTTGGCAGAGTAATACAAAGTTTGCACTGTCTATC GAACCTGAAAACAAGGAACTTCAAGCTTATGCTGCTCATGTAGCTTCCCTTAGAAATAAAGGCTTACCCACGGTAAGTTG TTGAACCACGTTTAATTATTAATATTTTTCACGCGCCACAAATCACTGTTATCAAGCTTTGTTAGTGTGTTTGAATCCTT TTATGTTTTGCTTTAACCAAATGACCAATTACTGTTTTTCCAGATTCCAACCACGCTGAAGATGGAAAAGGCTTGTAATC CATTCCTCCGTACATCCAGTGCACAAATCCGGCAATCCTTAAAGATTGCAGCCACAGCAGATGATATAGAAGCCCTGGCT ATCATACGGCAAGCAAAAGATAATTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0032100.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGTTCTTTTCTACTCCGTTGAAAACACTGCGTGGGGGAGCTAGTCGCTCGCTCAGAGTGGCTCGGTTTTGCAGTGT TGCAAATATGTCTTCCTCGTTGCAGATTGAATTGGTACCTTGCCTGAGGGACAATTATGCATATCTTTTACATGATGTGG ATACGGGTACAGTTGGTGTTGTTGACCCTTCTGAAGCTGTGCCTATCATAGATGCGTTGAGCAGGACAAAACGAAATTTG ACATACATACTCAACACCCACCACCATCATGATCACACTGGTGGAAATGTGGAATTGAAAGAAAAATATGGAGCAAAGGT AATTGGTTCGGGAGCTGACAAGGAAAGGATCCCTGGGATTGATATCTATTTGAATGATGGTGATAAGTGGATGTTTGCTG GCCATGAGGTGCATGTAATGGACACGCCTGGTCACACCCGAGGCCACATTAGCTTCTACTTTCCTGGATTTGGGGCAATT TTTACAGGAGACACTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCAGAACAGATGCTATCTTCTCTAAG CAAGATCATGTCTTTGCCAGAAGCTACAAGTGTATACTGTGGACACGAATACACATTGAGTAATACAAAGTTTGCACTGT CTATCGAACCTGAAAACAAGGAACTTCAAGCTTATGCTGCTCATGTAGCTTCCCTTAGAAATAAAGGCTTACCCACGATT CCAACCACGCTGAAGATGGAAAAGGCTTGTAATCCATTCCTCCGTACATCCAGTGCACAAATCCGGCAATCCTTAAAGAT TGCAGCCACAGCAGATGATATAGAAGCCCTGGCTATCATACGGCAAGCAAAAGATAATTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0032100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRFFSTPLKTLRGGASRSLRVARFCSVANMSSSLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEAVPIIDALSRTKRNL TYILNTHHHHDHTGGNVELKEKYGAKVIGSGADKERIPGIDIYLNDGDKWMFAGHEVHVMDTPGHTRGHISFYFPGFGAI FTGDTLFSLSCGKLFEGTPEQMLSSLSKIMSLPEATSVYCGHEYTLSNTKFALSIEPENKELQAYAAHVASLRNKGLPTI PTTLKMEKACNPFLRTSSAQIRQSLKIAATADDIEALAIIRQAKDNF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11935
1 287 287 8.2E-183 –
PANTHER
PTHR11935:SF143
1 287 287 8.2E-183 –
PIRSF
PIRSF005457
29 287 259 8.7E-124
IPR017782
Hamap
MF_01374
34 287 254 41.987
IPR017782
Gene3D
G3DSA:3.60.15.10
34 287 254 2.1E-103
IPR036866
SUPERFAMILY
SSF56281
34 287 254 3.22E-68
IPR036866
TIGRFAM
TIGR03413
37 287 251 1.1E-94
IPR017782
CDD
cd07723
39 202 164 2.24469E-81
IPR035680
SMART
SM00849
44 202 159 7.5E-36
IPR001279
Pfam
PF00753
54 202 149 4.6E-16
IPR001279
Pfam
PF16123
203 287 85 3.2E-26
IPR032282

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004416
Molecular function Hydroxyacylglutathione hydrolase activity Catalysis of the reaction: (S)-(2-hydroxyacyl)glutathione + H2O = glutathione + a 2-hydroxy carboxylate.
Subterm of
GO:0019243
Biological process Methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0032100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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