Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0033300.1

Overview

Field Value
Gene ID LotjaGi3g1v0033300
Transcript ID LotjaGi3g1v0033300.1
Lotus japonicus genome version Gifu v1.2
Description Invertase/pectin methylesterase inhibitor family protein; TAIR: AT1G48020.1 pectin methylesterase inhibitor 1; Swiss-Prot: sp|P83326|PMEI_ACTDE Pectinesterase inhibitor; TrEMBL-Plants: tr|A0A151SPC0|A0A151SPC0_CAJCA Pectinesterase inhibitor 1; Found in the gene: LotjaGi3g1v0033300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:3521484..3522122) extracted from Lotus japonicus Gifu genome v1.2.

CTAGAAATGAAAAAAACTCATACAATGACTAACACCTTCTCATCTGTCCTCTCATCCCTTGTACTAGCTTTTATTCTATT TGTTGCATCTTCCGATGCAACCAACAAAATAGTGGATATCAGTGAGATTTGCAAAACAACTGTAACTCCTTCATTTTGTT CAGCCCTTTTAAACTCAAGCCCAGGTGGAAAAGACCTTGTTAGTCTTAGCCAGTATATAATTGACGTGGATCGTGCCAAT GTGACCAACACAATCACTCTACTCAAATCTTTGATCCCAAAAAGTAAAGATCCAAAGCTAACAGCCCATTACAAAGATTG CTTGGACATTTATGGGGAAGAAGGTGCTCTTGGCGATGTTGATGACATTCAACGGGCTTTCAAGATGAAAGATTATCTTG GTATGAACATTCACGCAAGTGCTCTCTTTGATCGAGGTGAAGATTGTATTTCAGGGGAGTTTCCGGGACAACCCGGTGTT CATGATCCCTCATTACTTCCAAAATATGCTTTTGTTGTTAAGCAGGTTACTTCAATTATTCTTGTCTTATCAAATGACTT GAGAGGTGCTTGATCAATTGTTGTATATTAATATTTGGATGAAGTTGCAGTAAAATGAGTTAGCTACATTTTGAACAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0033300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAAAAACTCATACAATGACTAACACCTTCTCATCTGTCCTCTCATCCCTTGTACTAGCTTTTATTCTATTTGTTGC ATCTTCCGATGCAACCAACAAAATAGTGGATATCAGTGAGATTTGCAAAACAACTGTAACTCCTTCATTTTGTTCAGCCC TTTTAAACTCAAGCCCAGGTGGAAAAGACCTTGTTAGTCTTAGCCAGTATATAATTGACGTGGATCGTGCCAATGTGACC AACACAATCACTCTACTCAAATCTTTGATCCCAAAAAGTAAAGATCCAAAGCTAACAGCCCATTACAAAGATTGCTTGGA CATTTATGGGGAAGAAGGTGCTCTTGGCGATGTTGATGACATTCAACGGGCTTTCAAGATGAAAGATTATCTTGGTATGA ACATTCACGCAAGTGCTCTCTTTGATCGAGGTGAAGATTGTATTTCAGGGGAGTTTCCGGGACAACCCGGTGTTCATGAT CCCTCATTACTTCCAAAATATGCTTTTGTTGTTAAGCAGGTTACTTCAATTATTCTTGTCTTATCAAATGACTTGAGAGG TGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0033300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKTHTMTNTFSSVLSSLVLAFILFVASSDATNKIVDISEICKTTVTPSFCSALLNSSPGGKDLVSLSQYIIDVDRANVT NTITLLKSLIPKSKDPKLTAHYKDCLDIYGEEGALGDVDDIQRAFKMKDYLGMNIHASALFDRGEDCISGEFPGQPGVHD PSLLPKYAFVVKQVTSIILVLSNDLRGA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 13 13 - –
SignalP_GRAM_NEGATIVE
SignalP-noTM
1 31 31 - –
Phobius
SIGNAL_PEPTIDE
1 29 29 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 31 31 - –
SignalP_EUK
SignalP-noTM
1 31 31 - –
TIGRFAM
TIGR01614
7 185 179 1.1E-15
IPR006501
TMHMM
TMhelix
7 29 23 - –
PANTHER
PTHR36710
10 187 178 1.2E-36 –
PANTHER
PTHR36710:SF1
10 187 178 1.2E-36 –
Phobius
SIGNAL_PEPTIDE_H_REGION
14 25 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
26 29 4 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
30 188 159 - –
SMART
SM00856
33 181 149 6.1E-11
IPR006501
CDD
cd15797
34 185 152 1.90931E-37
IPR034086
Gene3D
G3DSA:1.20.140.40
34 186 153 1.1E-34
IPR035513
Pfam
PF04043
38 180 143 2.9E-10
IPR006501
SUPERFAMILY
SSF101148
38 185 148 6.93E-21
IPR035513

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0043086
Biological process Negative regulation of catalytic activity Any process that stops or reduces the activity of an enzyme.
Subterm of
GO:0046910
Molecular function Pectinesterase inhibitor activity Stops, prevents or reduces the activity of any pectinesterase enzyme.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0033300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…