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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035100 |
| Transcript ID | LotjaGi3g1v0035100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SBP (S-ribonuclease-binding protein) family protein, putative; TAIR: AT3G12920.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A0S3SAB9|A0A0S3SAB9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0035100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3731545..3733885) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAATCTGATAGGTAGCAGCTTAGCAATCCATAAATAGACAAAATCTTACTATATCAATTAAAAATCATGCACCCTCT TACTCTCTCTCTTCTATATATAAGATTAAAAATTTATTGAAATTTTGCTGCCACCTCGATTGCATGCTTTTGTTCATTGT TTTCTGACACTCATTCATTTCTCACCCTCTTCATATCTCTCTCACCGTTTCCAATACCAAATCCTCCACTCTCAAAGCAA AACTCACCCAATAAAATCCTCTTCATCATCCATATAAACCAAACACAAAACATAACATTTTCTCTCCTCTCAAGTCTCTA ATGGCTATTGAGACTCACCATCTCAATCTTTTCCCTCCTCACTTCATTCCCAACCGGTAATACATTTATTTTCTCTCCTT TTTCTTTCTCTCCGTTTTCTCTCTGTTTTTTTTCTCTGATTTCCTTTTATTTGCAGAGAAACAATCATCACGAATCCAAT CGACTCAACCTTCGTCAACATGTACAACGCGAACAACTACTCCTCCTTGCTACCACACTCCGCCACCACCACCACCGCGT CGGAAACTCTCTTCCCGGCAGCGCCGCAGTACGCTTCCTTCATCGCCGATTCGCCCGCCGCCATGAAATCTGACAGCACT CTCACCTACAACCACCACAACACCACCACCGCCACCAGCAACGGTGTCCCCTTCCAGAGAAAACGTTCCAGAGACGCCAT TAACAACAACAACTACCTCTTCTCTCCTTACAAGAACACCAGCAACAACGCTTTCTCCTTCCTCGGTGAAGATATCTCCC TCCACATCCACCACCACCAACTCGACATCGATAACCTCATCTCACAACACGTAAATCTCCATCTCCATCATCCTACCACT GAAAAACCACTTGATTTCTGTTTTCTTTGTTCTTGATTTCTAACTGGTGTGAAATTTGTGTGAAATTCTTCAGATGGAGA AGGTGAGAATGGAATTGGAGGAGAAACGGAAAGGACAAGTGAGAAGGTTGATGGAAGCGATCGAGATCGGGATGATGAAG AGGCTGAAAACGAAGGAAGATGAGATCGAGAGAATCGGAAAACTGAATCTCGCGCTTGAAGAGAGAGTGAAATCACTCTA CATCGAGAATCAGATATGGCGAGAGCTAGCACAAACAAACGAAGCCACCGCAAACGCTCTCCGCGCAAATCTGGAGCACG CGCTGTGTCAGATCAGAGATTCCGACGATGAGGACGCCACCGTTGTTCCGCCGGCAATGGCGGCGCCGGAGGATGATGCG GAATCATGCTGCGGTAGCAACAACGATGATGATGGGTGGCGCACGGTAGTGCAGCAGGGGGTGCAGGATAAGGAGTGTGG TGGGCCCGAGAGTGATAGGAGGAGGAGATTGTGCAGGAAGTGTGGGAAAGAGGAATCGTGCGTGCTTATCTTGCCTTGCA GACACCTCTGTGTTTGTACTCTTTGTGGGTCTACCCTACACAATTGTCCTATCTGTAAATCCTACAAAAATGCTAGTGTC CATGTTAACATGACTTGACTAGTTGGAAGGGTAGTTGATTTTTTTTGGTCCATTTTGATTATCATCTCTCCATAGCTTTT TGATGATGGTAGTAGTACAAAGTGATATTTTTCACCAAATTGGAAAAATACAAAATCACAAGCAAGAAATTTAATTCAAT TTGTTTCCATATCTTCTCATCTTTCTATTGTTTACTTGCACATTTTTTCAGATTTTAGATAAGGATGAATGCTAGAAACT AGAAAACTAGAAATGCATTTTCCTTTTGCCATTTAATTGGTTTATTTGATTATAAAGTTTATCAACTTAGCTGTCAATTA TGCTTATTTCTAAAAAAATTGGTCAATAATACTTAACTTATACAATAGAAATTTAAATAAGCTTAAAATCAATGCTAATC TTACATAATTTTCATGTTCATAGGAGTGTATCAGTGTATGTACTATGTTAGACACTTTAATAATATGGTGTTTTTGGGAA TTTCCAATTTCCTATAATAGAGATTTCTTCCTATTTGACAATTCTGATTTATGGAATCAGTTTCTGCATTTGGGGAAGCT TAATTTTCGGTTTCGTCTTTGATTCGATTAAATTCATTGTAGCAGTGCTATTGATGATTGAATAAGGACAAAGATTGATA GGAGGTACACATTGTAGGGCGTAGGTGGCTTGTTTTAGATGAGATAGTTCAGGACCTTTAAAAGGTCTGGCAAGGGGTAA AAGGGTAAAAAAGTTGTATAGGGCTATAGGTCCAAAACTATCTACTTGTCAGATAGGAGGCAGTAGTACCCTCTAAATTG GGTACATCGTCCTGTTTTTAC
CDS sequence (LotjaGi3g1v0035100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTGAGACTCACCATCTCAATCTTTTCCCTCCTCACTTCATTCCCAACCGAGAAACAATCATCACGAATCCAAT CGACTCAACCTTCGTCAACATGTACAACGCGAACAACTACTCCTCCTTGCTACCACACTCCGCCACCACCACCACCGCGT CGGAAACTCTCTTCCCGGCAGCGCCGCAGTACGCTTCCTTCATCGCCGATTCGCCCGCCGCCATGAAATCTGACAGCACT CTCACCTACAACCACCACAACACCACCACCGCCACCAGCAACGGTGTCCCCTTCCAGAGAAAACGTTCCAGAGACGCCAT TAACAACAACAACTACCTCTTCTCTCCTTACAAGAACACCAGCAACAACGCTTTCTCCTTCCTCGGTGAAGATATCTCCC TCCACATCCACCACCACCAACTCGACATCGATAACCTCATCTCACAACACATGGAGAAGGTGAGAATGGAATTGGAGGAG AAACGGAAAGGACAAGTGAGAAGGTTGATGGAAGCGATCGAGATCGGGATGATGAAGAGGCTGAAAACGAAGGAAGATGA GATCGAGAGAATCGGAAAACTGAATCTCGCGCTTGAAGAGAGAGTGAAATCACTCTACATCGAGAATCAGATATGGCGAG AGCTAGCACAAACAAACGAAGCCACCGCAAACGCTCTCCGCGCAAATCTGGAGCACGCGCTGTGTCAGATCAGAGATTCC GACGATGAGGACGCCACCGTTGTTCCGCCGGCAATGGCGGCGCCGGAGGATGATGCGGAATCATGCTGCGGTAGCAACAA CGATGATGATGGGTGGCGCACGGTAGTGCAGCAGGGGGTGCAGGATAAGGAGTGTGGTGGGCCCGAGAGTGATAGGAGGA GGAGATTGTGCAGGAAGTGTGGGAAAGAGGAATCGTGCGTGCTTATCTTGCCTTGCAGACACCTCTGTGTTTGTACTCTT TGTGGGTCTACCCTACACAATTGTCCTATCTGTAAATCCTACAAAAATGCTAGTGTCCATGTTAACATGACTTGA
Protein sequence (LotjaGi3g1v0035100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIETHHLNLFPPHFIPNRETIITNPIDSTFVNMYNANNYSSLLPHSATTTTASETLFPAAPQYASFIADSPAAMKSDST LTYNHHNTTTATSNGVPFQRKRSRDAINNNNYLFSPYKNTSNNAFSFLGEDISLHIHHHQLDIDNLISQHMEKVRMELEE KRKGQVRRLMEAIEIGMMKRLKTKEDEIERIGKLNLALEERVKSLYIENQIWRELAQTNEATANALRANLEHALCQIRDS DDEDATVVPPAMAAPEDDAESCCGSNNDDDGWRTVVQQGVQDKECGGPESDRRRRLCRKCGKEESCVLILPCRHLCVCTL CGSTLHNCPICKSYKNASVHVNMT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 344 | 344 | 1.1E-70 | – | |
| PANTHER | 37 | 343 | 307 | 1.3E-119 | – | |
| PANTHER | 37 | 343 | 307 | 1.3E-119 | ||
| Coils | 181 | 201 | 21 | - | – | |
| Coils | 223 | 243 | 21 | - | – | |
| Gene3D | 274 | 343 | 70 | 1.4E-8 | ||
| Pfam | 294 | 333 | 40 | 4.2E-7 | – | |
| ProSiteProfiles | 297 | 332 | 36 | 8.993 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0035100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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