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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0038400 |
| Transcript ID | LotjaGi3g1v0038400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G40720.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720; TrEMBL-Plants: tr|A0A0B2SQD6|A0A0B2SQD6_GLYSO Pentatricopeptide repeat-containing protein, mitochondrial; Found in the gene: LotjaGi3g1v0038400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4149266..4152485) extracted from Lotus japonicus Gifu genome v1.2.
TTTTACTATAAAATGGTAGTCTCGTAGAGGCCATAAAAACATATGTAAAACAAAAATGTCGTATTTAAACCAACACTCTC CTATCTACCTTCACTCTGTTCTCCATGAGTAAAAAATCTAATTCCAAACTCCATCCTCCAAGTTTCGCACTCATGGTCGT CACAAAACATGGTTCCCACCATTTTTTCCTCCATTCAAACCAAACGTGTCTCTGCCACACTCTCATTGTTTTCCAGAACC CACTTGACCAATGTATCCAACAAACCAAAGTCAACAACGAGAACCCTCCATTCACAAACATCCTCAGAGTTACCAAACAA CGTGAGGTTTTGCTTCCAAGACTGTGTCTCACTCTTGCAGCACCTGAGGGACCATGGAGACATAAACTATGGCAGAACCC TTCATTCTCTCTTCGTTAAAACTGCCCTTGACAAGGATGTCTTTGTACAAAACAACATGGTTAGGTTTTATGGGAATATT GGGGAACTTGAGAATGCACAGAACCTGTTTGATGAAATTCCTGAACCAAGTTTGGTTTCTTGGACGAGCTTGGTCTCTTG TTATGTCCATGTGGGGCAACATGAAATGGGTCTGAGCTTGTTTCGTCGCTTGTGTAGGTCCGGCTTGCACCCCAACGAGT TTGGTTTCTCTGTGGCACTCAAGGCTTGTAGGGTGTTGCAGGATGTTGTGATGGGTAGGGTCATTCATGGGTTGATAGTG AAAACTGGGTTTGATTCGTGTAGCTTTTGTGGTGCTTCGATTCTTCATATGTACGCTGGTTGTGGAGATGTTGAGGATTC GAGGAAGTTTTTTGATGGGGTTTGTTTGGGTGAGAGGGGTGAGGCATTGTGGAATGCTTTGCTGAATGCTTATGTGCAGG TGTCTGATGTGCAGGGTTCTCTGAAGTTGTTTCATGAGATGGGGTACTCTGCTGTGTCGCCGAATCATTTTACTTACGCG AGCTTTGTTAAACTCTGTGCTGATGTGTTGGATTTTGAACTTGGGAGGTGTGTTCATTGCCAGATTGTGAAGGTTGGGAT TGAAAATGATGTTGTGGTCGGTGGTGCCCTTGTTGACTGCTATGCTAAACTAGGATTATTAGATGATGCTTGTAAAGTGT TTCAAATCCTTGAAGAGAAGGATAATGTGGCATTGTGTGCTTTACTTGCTGGGTTTAATCAGATTGGAAAATCCAAGGAA GGTCTTTCGTTTTACATTGATTTTCTTAGTGAAGGTAATAAGCCAGATCCATTTACTTCTGCAAGTGTTGCCAGTTTGTG CTCAGATTTGGAAACAGAGCATACTGGTACTCAAGTTCACTGTGGTTTCATCAAACTTGGCTTTAAGTTGGATTCATACA TTGGTAGTGCCTTTATCAACATGTATGGAAACTTTGGGATGATATCAGAGGCTTATAAATGTTTTACTGACATTTGCAAT AAGAATGAAATATGCATTAATGCCATGATGAACTGTTTAATTCTCAGTTCAAATGATTTGCAAGCTTTAGAGCTGTTTTG TGCGATGAAGGAAGTTGGTATTGCACAAAGCAGTTCTTCAATCAGTTATGTTCTACGGGCTTGTGGAAACCTTTTTAAGC TTAAAGAAGGAAGATCTTTACATTCTTACATGATTAAAAATCCTCTTGAAGATGACTCTAGGTTGGCCTTAGATAATGTT CTTCTTGAGATGTATGTTAGATGTAGAGCTATTGATGATGCAAAATTGATTTTCAAAAAGATGCAAATGCGAAATGAGTT TTCCTGGACTACTATCATATCTGGATGCAGAGAATCAGGGCACTTTGTAGAAGCTCTGGGGATCTTTCATGATATGCTTC CATATTCAAAAGCTAGTCAGTTCACCTTAATTAGTGTTATTCAGGCTTGTGCAGAACTAAAGGCACTTGATGTAGGAAAA CAGGTCCATTCCTATATCATGAAAGCGGGATTTGAAGATTATCCATTTGTTGGAAGTGCCCTGATTAACATGTATGCATT ATTTAAACATGAAACTTTGAATGCTTTCATGATATTCTTGTCCATGAAAGAGCAAGATCTTATCTCTTGGAGTGTCATGT TAACTTCTTGGGTCCAAAATGGTTATCATCAAGAAGCACTTAAGCTTTTCGCAGAATTCCAAACAGTTCCCACTTTTCAG GTTGACGAGTCTATCTTATCAAGCTGTATTTCAGCTGCTGCTGGCTTAGCAGCATTGGACATGGGGAAATGTTTCCATTC CTGGGCTATCAAACTTGGATTGGAAATTGATCTTCATGTTGCTTCTTCCATTACAGACATGTATAGTAAATGTGGAAATA TTAAAGAAGCGTGCCATTTTTTCAATACTATCAGTGACCATAATTTGGTATCTTGGACGACTATGATATATGGATATGCT TATCACGGGCTTGGGAAAGAAGCTATTGACCTGTTTAACAAGGGTAAAGAAGCTGGATTGGAACCTGATGGTGTTACCTT CACTGGGGTTTTAGCTGCATGTAGTCATGCTGGATTGGTGGAGGAAGGTTTCAAATATTTTGAGTACATGAGAAGTAAAT ACTGCTATGAAGTAACCATAAATCATTATGCCTGCATGGTTGACCTTCTTGGCCGAGCAGAGAAACTGGAAGACGCCGAG GCTTTGATAAAGGAAGCTCCCTTTCATTCAAAATCTCTTCTATGGAAGACACTCCTCGGTTCTTGCTCTAAACATGAGAA TGCTGAAATAGGGAACAAAATATCAAAGATGCTTGCTGATACCGAACTGAATGAACCTTCAACCAATGTTCTACTGTCTA ACATTTATGCATCAGCATCAATGTGGAAAAATTGCATTGAGTTGAGAAACAAAATGGTAGAAGGGAGTGCTAATAAGCAA CCTGGAAGTAGCTGGATTCAGTTGGCAGGATAGAGTTATTGAATGTTCTAAATATTTTGCGTCTCAATAAATATCATATC AAAAGCACATTGATCTGTTGATGCAACATTACTGATCTTGAAAATTCTTTGTGGTGGTCTTGACAAAATTGATTGTTTCA ATTATTGGTTTCATGGGTCAACCATGCATTTCTTTAAAAATGCCGATTGAATGCTAGGACACAAGTAGTCATTTCCATAA TTACAATAGTAGTATTAAGAATTTCAGTTGGGATAAACTATGCAATTCTTTCGTTATTAGGACCATTGGAGGGAGTTTGG CAGTCCATTTTATAATAAAA
CDS sequence (LotjaGi3g1v0038400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCCCACCATTTTTTCCTCCATTCAAACCAAACGTGTCTCTGCCACACTCTCATTGTTTTCCAGAACCCACTTGAC CAATGTATCCAACAAACCAAAGTCAACAACGAGAACCCTCCATTCACAAACATCCTCAGAGTTACCAAACAACGTGAGGT TTTGCTTCCAAGACTGTGTCTCACTCTTGCAGCACCTGAGGGACCATGGAGACATAAACTATGGCAGAACCCTTCATTCT CTCTTCGTTAAAACTGCCCTTGACAAGGATGTCTTTGTACAAAACAACATGGTTAGGTTTTATGGGAATATTGGGGAACT TGAGAATGCACAGAACCTGTTTGATGAAATTCCTGAACCAAGTTTGGTTTCTTGGACGAGCTTGGTCTCTTGTTATGTCC ATGTGGGGCAACATGAAATGGGTCTGAGCTTGTTTCGTCGCTTGTGTAGGTCCGGCTTGCACCCCAACGAGTTTGGTTTC TCTGTGGCACTCAAGGCTTGTAGGGTGTTGCAGGATGTTGTGATGGGTAGGGTCATTCATGGGTTGATAGTGAAAACTGG GTTTGATTCGTGTAGCTTTTGTGGTGCTTCGATTCTTCATATGTACGCTGGTTGTGGAGATGTTGAGGATTCGAGGAAGT TTTTTGATGGGGTTTGTTTGGGTGAGAGGGGTGAGGCATTGTGGAATGCTTTGCTGAATGCTTATGTGCAGGTGTCTGAT GTGCAGGGTTCTCTGAAGTTGTTTCATGAGATGGGGTACTCTGCTGTGTCGCCGAATCATTTTACTTACGCGAGCTTTGT TAAACTCTGTGCTGATGTGTTGGATTTTGAACTTGGGAGGTGTGTTCATTGCCAGATTGTGAAGGTTGGGATTGAAAATG ATGTTGTGGTCGGTGGTGCCCTTGTTGACTGCTATGCTAAACTAGGATTATTAGATGATGCTTGTAAAGTGTTTCAAATC CTTGAAGAGAAGGATAATGTGGCATTGTGTGCTTTACTTGCTGGGTTTAATCAGATTGGAAAATCCAAGGAAGGTCTTTC GTTTTACATTGATTTTCTTAGTGAAGGTAATAAGCCAGATCCATTTACTTCTGCAAGTGTTGCCAGTTTGTGCTCAGATT TGGAAACAGAGCATACTGGTACTCAAGTTCACTGTGGTTTCATCAAACTTGGCTTTAAGTTGGATTCATACATTGGTAGT GCCTTTATCAACATGTATGGAAACTTTGGGATGATATCAGAGGCTTATAAATGTTTTACTGACATTTGCAATAAGAATGA AATATGCATTAATGCCATGATGAACTGTTTAATTCTCAGTTCAAATGATTTGCAAGCTTTAGAGCTGTTTTGTGCGATGA AGGAAGTTGGTATTGCACAAAGCAGTTCTTCAATCAGTTATGTTCTACGGGCTTGTGGAAACCTTTTTAAGCTTAAAGAA GGAAGATCTTTACATTCTTACATGATTAAAAATCCTCTTGAAGATGACTCTAGGTTGGCCTTAGATAATGTTCTTCTTGA GATGTATGTTAGATGTAGAGCTATTGATGATGCAAAATTGATTTTCAAAAAGATGCAAATGCGAAATGAGTTTTCCTGGA CTACTATCATATCTGGATGCAGAGAATCAGGGCACTTTGTAGAAGCTCTGGGGATCTTTCATGATATGCTTCCATATTCA AAAGCTAGTCAGTTCACCTTAATTAGTGTTATTCAGGCTTGTGCAGAACTAAAGGCACTTGATGTAGGAAAACAGGTCCA TTCCTATATCATGAAAGCGGGATTTGAAGATTATCCATTTGTTGGAAGTGCCCTGATTAACATGTATGCATTATTTAAAC ATGAAACTTTGAATGCTTTCATGATATTCTTGTCCATGAAAGAGCAAGATCTTATCTCTTGGAGTGTCATGTTAACTTCT TGGGTCCAAAATGGTTATCATCAAGAAGCACTTAAGCTTTTCGCAGAATTCCAAACAGTTCCCACTTTTCAGGTTGACGA GTCTATCTTATCAAGCTGTATTTCAGCTGCTGCTGGCTTAGCAGCATTGGACATGGGGAAATGTTTCCATTCCTGGGCTA TCAAACTTGGATTGGAAATTGATCTTCATGTTGCTTCTTCCATTACAGACATGTATAGTAAATGTGGAAATATTAAAGAA GCGTGCCATTTTTTCAATACTATCAGTGACCATAATTTGGTATCTTGGACGACTATGATATATGGATATGCTTATCACGG GCTTGGGAAAGAAGCTATTGACCTGTTTAACAAGGGTAAAGAAGCTGGATTGGAACCTGATGGTGTTACCTTCACTGGGG TTTTAGCTGCATGTAGTCATGCTGGATTGGTGGAGGAAGGTTTCAAATATTTTGAGTACATGAGAAGTAAATACTGCTAT GAAGTAACCATAAATCATTATGCCTGCATGGTTGACCTTCTTGGCCGAGCAGAGAAACTGGAAGACGCCGAGGCTTTGAT AAAGGAAGCTCCCTTTCATTCAAAATCTCTTCTATGGAAGACACTCCTCGGTTCTTGCTCTAAACATGAGAATGCTGAAA TAGGGAACAAAATATCAAAGATGCTTGCTGATACCGAACTGAATGAACCTTCAACCAATGTTCTACTGTCTAACATTTAT GCATCAGCATCAATGTGGAAAAATTGCATTGAGTTGAGAAACAAAATGGTAGAAGGGAGTGCTAATAAGCAACCTGGAAG TAGCTGGATTCAGTTGGCAGGATAG
Protein sequence (LotjaGi3g1v0038400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPTIFSSIQTKRVSATLSLFSRTHLTNVSNKPKSTTRTLHSQTSSELPNNVRFCFQDCVSLLQHLRDHGDINYGRTLHS LFVKTALDKDVFVQNNMVRFYGNIGELENAQNLFDEIPEPSLVSWTSLVSCYVHVGQHEMGLSLFRRLCRSGLHPNEFGF SVALKACRVLQDVVMGRVIHGLIVKTGFDSCSFCGASILHMYAGCGDVEDSRKFFDGVCLGERGEALWNALLNAYVQVSD VQGSLKLFHEMGYSAVSPNHFTYASFVKLCADVLDFELGRCVHCQIVKVGIENDVVVGGALVDCYAKLGLLDDACKVFQI LEEKDNVALCALLAGFNQIGKSKEGLSFYIDFLSEGNKPDPFTSASVASLCSDLETEHTGTQVHCGFIKLGFKLDSYIGS AFINMYGNFGMISEAYKCFTDICNKNEICINAMMNCLILSSNDLQALELFCAMKEVGIAQSSSSISYVLRACGNLFKLKE GRSLHSYMIKNPLEDDSRLALDNVLLEMYVRCRAIDDAKLIFKKMQMRNEFSWTTIISGCRESGHFVEALGIFHDMLPYS KASQFTLISVIQACAELKALDVGKQVHSYIMKAGFEDYPFVGSALINMYALFKHETLNAFMIFLSMKEQDLISWSVMLTS WVQNGYHQEALKLFAEFQTVPTFQVDESILSSCISAAAGLAALDMGKCFHSWAIKLGLEIDLHVASSITDMYSKCGNIKE ACHFFNTISDHNLVSWTTMIYGYAYHGLGKEAIDLFNKGKEAGLEPDGVTFTGVLAACSHAGLVEEGFKYFEYMRSKYCY EVTINHYACMVDLLGRAEKLEDAEALIKEAPFHSKSLLWKTLLGSCSKHENAEIGNKISKMLADTELNEPSTNVLLSNIY ASASMWKNCIELRNKMVEGSANKQPGSSWIQLAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 21 | 172 | 152 | 1.1E-18 | ||
| PANTHER | 59 | 176 | 118 | 2.3E-132 | – | |
| ProSiteProfiles | 90 | 120 | 31 | 7.026 | ||
| ProSiteProfiles | 121 | 155 | 35 | 10.665 | ||
| Pfam | 123 | 153 | 31 | 5.6E-5 | ||
| TIGRFAM | 123 | 157 | 35 | 2.7E-6 | ||
| Gene3D | 173 | 277 | 105 | 4.7E-12 | ||
| PANTHER | 176 | 282 | 107 | 2.3E-132 | – | |
| ProSiteProfiles | 224 | 258 | 35 | 9.197 | ||
| Pfam | 227 | 270 | 44 | 2.4E-7 | ||
| ProSiteProfiles | 259 | 293 | 35 | 6.193 | ||
| PANTHER | 262 | 378 | 117 | 2.3E-132 | – | |
| Gene3D | 278 | 384 | 107 | 2.2E-10 | ||
| ProSiteProfiles | 294 | 328 | 35 | 8.177 | ||
| Pfam | 300 | 324 | 25 | 0.031 | ||
| PANTHER | 365 | 488 | 124 | 2.3E-132 | – | |
| ProSiteProfiles | 395 | 425 | 31 | 5.974 | ||
| ProSiteProfiles | 426 | 460 | 35 | 7.311 | ||
| Gene3D | 444 | 559 | 116 | 2.1E-16 | ||
| ProSiteProfiles | 461 | 495 | 35 | 5.81 | ||
| PANTHER | 465 | 583 | 119 | 2.3E-132 | – | |
| ProSiteProfiles | 498 | 528 | 31 | 6.292 | ||
| Pfam | 503 | 528 | 26 | 0.5 | ||
| ProSiteProfiles | 529 | 563 | 35 | 8.638 | ||
| TIGRFAM | 531 | 557 | 27 | 2.7E-4 | ||
| Pfam | 531 | 557 | 27 | 5.8E-4 | ||
| Gene3D | 560 | 688 | 129 | 2.1E-12 | ||
| PANTHER | 566 | 692 | 127 | 2.3E-132 | – | |
| ProSiteProfiles | 630 | 660 | 31 | 7.618 | ||
| Pfam | 632 | 656 | 25 | 0.011 | ||
| PANTHER | 669 | 896 | 228 | 2.3E-132 | – | |
| ProSiteProfiles | 701 | 731 | 31 | 6.555 | ||
| Gene3D | 710 | 912 | 203 | 1.3E-30 | ||
| ProSiteProfiles | 732 | 766 | 35 | 10.6 | ||
| Pfam | 732 | 779 | 48 | 2.5E-9 | ||
| TIGRFAM | 734 | 767 | 34 | 1.5E-4 | ||
| ProSiteProfiles | 767 | 797 | 31 | 8.594 | ||
| TIGRFAM | 769 | 797 | 29 | 0.0018 | ||
| ProSiteProfiles | 803 | 837 | 35 | 6.149 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0038400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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