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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0040000 |
| Transcript ID | LotjaGi3g1v0040000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L13; TAIR: AT1G78630.1 Ribosomal protein L13 family protein; Swiss-Prot: sp|Q9SYL9|RK13_ARATH 50S ribosomal protein L13, chloroplastic; TrEMBL-Plants: tr|I3S696|I3S696_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0040000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4321094..4325069) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAAAGAAAAAAGTAAAACCAAATGTCCTTCATCTCACTACATTATCCAAAGTAAAGAAAGACAAAGAGATAACAGA TAAATAGATAACATAGCACCCTGCACACCATAACACAGAGAGAGCAGCAACAATGGCATCACTGTGTGGTGCAGCTTCAG TGACCTTCCCTTCACCTTCATTCCCATCTCACAAGATTTCAACTACAAAATCATCCTTCGTTGGCTTCCAATTGCCACTA CCAAAGCTTTCATCTTCTTCCATTCGAACCCATTTCACTGCAACTCTTCGCGTCCATTGTCAGCAGGAAACTTCCTTGGT CACAGAAGAACAATCTCCAGTGGTTGCAGTAGAACAAGATCCTCGCTTCATGTGCGTTGAACCTGAGCCCCGATTCAAAG GCCCGGTACAACCCTTTTTGTTAATGGGTCTTGTTTATTTGCGTTGTTTGGTTGCCTAAAAAATTTTGTGAATGATTTTT CTTGAATTTTTTGCTTACCCATTATTGAGGAAGTTTCAATTAACTAGCATAAGGGGGAAAGTTTCAATTTTTAGTGTGGA TTTTGTTAAATTTTGGTGCTGATAAGAAAGAATGAAGTAGAGTATGAAGTTTTATGTTCTGATTTTGAATTAGTAGCATT TGTTTGTTGTAATTGAAGTAATTTAACTGTAAATTTGGCTTTGCTGAGTGCTAGCATTTTATGCCACTATTTTCTTCTCT TGTTAGCTTAATTAGCTTGGGAATGCATTGGTGGTTTCTTCTTTCTTTTTGTCAGCTTAGTTTTTGGTTTTGTTTTGCAT GTTTGGAAATGGGAAGTGCTTTAAATCTTTACTAGTGTTCACATTAAGGAAATTGAGTATGAAAATGTATCCGGGTGTGT GTTTCGGTTATTTTATTTTTAAGTTTATCAGCATCTAAATACAATTTTGGTTTATGTCTTCTGTTATTTTGAAGGTTTTA AACTTTGTAGATGCAATTTCTTGATGAATTTTGAACTGCCTGACCAAAAAACCAATCATTGTAGGACATTTGGAACAAGA CCTATTATCCAAAAGCTGCTGATCATGTCAATACAGAGAAAACATGGTACGTTGTCGACGCCACAGACAAAGTTCTTGGA AGACTAGCATCAACAATTGCCATTCACATCCGAGGGAAGAACCTAATGACCTATACACCCAGTGTGGACATGGGTGCTTT TGTAATTGTGGTATGTATTTCTTCATAAATTACTTGTGTTGTGTACCAAATTTATTGATAACACTATTGCTGGCGTACTC TGTTTATTTGGCAATGGAATGGAAACACTATTCTTCATGGTTTTCTACTTATGCTGGAATAACCCTATGCATTACAGGAT TTAATTTCCAGTTTAGCACCTTTCTTTATCACTTTTTCTTTTTGGTTAAAAGAAAAGGAACCCGTCCAACTATAGGTCAG TTTCAAAAGATAAAACCCCTAAGGTTAAAAGTTCTACGACATGTTTCCCTAAACGAAATTGTGCAAAGCAATACTAAATT AATCCCCTGTGAATGTGCAAAACACCCCTTTGGATGTCAGTGTGCACGATTTGATTAGTCATATCAAGTTGTTCAGTTTT AAACCACATGGTTTTTTTCTGAAATTGACCTATAGTTGAAGGGGGTTTCTTGTGTTTTTGCCTTTCATTTTATGGTAGGT ATCCATGAAAATAGTAGAAGCTCCACAGATATCATATATATATTTTGTATTGTCATTATCATTCTCAGCTTTAGTTCTGG AGTGATGTCCTATTCGACAAAGAAGGTTGGATCATATTTTACATTTTTGTATATTGATTCTCAACTTAACTCTAGTTTAT TGTTTTACATCATGTTTGGGGAAGTCCTAATTAAGCAGCACTGAATCTAGTTATGAATGAATATCTGTCATGTTTTTTTA ATCATATCTGGTAGCTGCAAGAAAAGATATTCCTTAATCCAGTACATAATTTTTTTATTCATTTGAAAGTTGTTTGAATT AGAAGCATGAGGATGACTTATGATCTATAGAGGAAACAGGATTCCTTTACAAATACTGTGTTTCGATTATATTCACTTTT TACATTATTATCTATGTTAAGCATCCTGAACCTTCTCTTGTAGTTTTAAGCTATTGTCAATGATATTTCTTCCTGTTCCA ATTGACGTGTATGGTCAAAGAATATGCTCTAGATATTTAAAGTTTCATGATTGCTATACAAAGTCTGAATTTCTTTTATT ATTTATACAGGTAAATGCAGAAAAGGTTGCTGTGTCAGGGAAAAAGAGGACCCAAAAGCTTTACAGAAGGCACTCTGGAC GACCTGGTGGTATGAAAGTGGAGACATTTTCCCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGG GGCATGCTTCCAAAAGGGAGGGTAGGTTCAACTCTAGTTTAATATTTTTCCAACAGACAAAACACACATCAGAAGTTGAC ATGTCTAACTGGATTGTTGATGCATGTTAATTGTATAGAAGCTAATATAATTAGAAATTATGTGATTAGTTTTTATGATG TCACATATGCAAGATAGATTTACTTAACAGATAGAAGAATATAGTGGTGACTGGTGAAGAATGAAATGAATCTCAAAATT GTAAATTTGCTTAAGAATTCAAATTTTGGTTTGAAAGGAATGCTTGGGTTTCTTAAGCACAGGCTATACTCATGGTTGGA TAAAGCTCGTCAAATGTAAACATGAGTTTGAAGTTAGGAAGTAAGGGTGTATCCATTGGATTTTTATGAGTTAACTTAAA ACTGTAATGCATATTAAATTAAACTAACCATGGACACACCCTCACCTGATTACTTTATAGACAAACTCACTTTATAGGAG ACTTTTCTCTCATGGCCATGCTTTGGGGCGAGATTTGCTTTTTGTGGTGCTTCCTTAATAATTTCTCAGGATGACTTATC CTCTTGAATTCATGTGTAATAGTTTTTGCTTGGTTTCTGTAGGTGATTGTATATTCAAAGGATGGTTCCTTAGAATGATA TTTCATTGTTCTTTGAATGATATGTTTTTTAAAAGATGTTTCTTTTTAGTTGAATCTAAACATAAATCAAGGGTTGGTTT ATGCAGCTTGGCAGGGACCTATTCACCCACCTGAAGGTTTATAAGGGCCCAGATCATCCACACGCAGCGCAGAAGCCTGT TGATTTGCCGATAAGAGATAAGAGAATAGAGTTGAAGAGATAGGTCATAGGTGTTGCAAAGAGCTTGGCATGAAATATGA CAAAGATAGTTGAGCTCCTTGCTTTAGCTGCTTGCTTTGCTGCTGTCTTCCATTTGATGCTTTATTTGTCTGTAGAGGTA TCTGATTATTGCATTACTTGTGTTTTTATCCAAGGCCTATGTCGAATCTTAATTTTTTTTTTATAGGTTTGAATCATAGG GGTGTAATATTTTTTTAATATGCATTTTAGTGTATTGGCCATGTTTTCATTTCAAGAAAATCTTCCATCTCTTTTCTTTT CCCTCTTTAGTAGTTCAGTCCCTTAGACTATCAAAATGGAAAAGAAAATTGAAAAAGACCTAAGTGGAGGTTACCTTAAC CCACATGTAGGTATTTATTCATTTTAAAACTAAGTATCATACGTCATTGTTTTATTGTTGATGCCCGTTCAGTTCATTTT AGATAACATCCAAGTTTTCTTGTAAGATGTATAGGGAGTTTGATTTTACTGTTAGGAATCTAATAATCACTTATAGGAAG AAGCTACAAAGTGTAATTTCAGAAGTTACTGTGTTTTAGATTGTGTTCCCACGGCTAATCTAAAACGCTAGTAGACAGAC ATGAGTGTTGCTTATGTGGATGGATAATTTTTTTTCCCATTTACAGTATGCTTATAGAAAATTGGATAACATAAGTTCAG TAGAAATTTGTTCTCTTATTGTTCGGACGAATCCAACCAAATCACTTGGAAGAGTG
CDS sequence (LotjaGi3g1v0040000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCACTGTGTGGTGCAGCTTCAGTGACCTTCCCTTCACCTTCATTCCCATCTCACAAGATTTCAACTACAAAATC ATCCTTCGTTGGCTTCCAATTGCCACTACCAAAGCTTTCATCTTCTTCCATTCGAACCCATTTCACTGCAACTCTTCGCG TCCATTGTCAGCAGGAAACTTCCTTGGTCACAGAAGAACAATCTCCAGTGGTTGCAGTAGAACAAGATCCTCGCTTCATG TGCGTTGAACCTGAGCCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTATTATCCAAAAGCTGCTGATCATGTCAA TACAGAGAAAACATGGTACGTTGTCGACGCCACAGACAAAGTTCTTGGAAGACTAGCATCAACAATTGCCATTCACATCC GAGGGAAGAACCTAATGACCTATACACCCAGTGTGGACATGGGTGCTTTTGTAATTGTGGTAAATGCAGAAAAGGTTGCT GTGTCAGGGAAAAAGAGGACCCAAAAGCTTTACAGAAGGCACTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTTC CCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGGGGCATGCTTCCAAAAGGGAGGCTTGGCAGGG ACCTATTCACCCACCTGAAGGTTTATAAGGGCCCAGATCATCCACACGCAGCGCAGAAGCCTGTTGATTTGCCGATAAGA GATAAGAGAATAGAGTTGAAGAGATAG
Protein sequence (LotjaGi3g1v0040000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLCGAASVTFPSPSFPSHKISTTKSSFVGFQLPLPKLSSSSIRTHFTATLRVHCQQETSLVTEEQSPVVAVEQDPRFM CVEPEPRFKGPDIWNKTYYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVA VSGKKRTQKLYRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTHLKVYKGPDHPHAAQKPVDLPIR DKRIELKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 18 | 6 | - | – | |
| Phobius | 19 | 248 | 230 | - | – | |
| PANTHER | 55 | 247 | 193 | 1.4E-116 | – | |
| PANTHER | 55 | 247 | 193 | 1.4E-116 | ||
| Gene3D | 96 | 245 | 150 | 1.7E-57 | ||
| TIGRFAM | 106 | 237 | 132 | 2.2E-57 | ||
| SUPERFAMILY | 106 | 239 | 134 | 3.14E-53 | ||
| CDD | 112 | 225 | 114 | 6.15656E-64 | ||
| Pfam | 112 | 234 | 123 | 7.0E-50 | ||
| Hamap | 112 | 247 | 136 | 26.712 | ||
| ProSitePatterns | 202 | 224 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0040000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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