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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0041000 |
| Transcript ID | LotjaGi3g1v0041000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G16920.1 RAB GTPase homolog A1B; Swiss-Prot: sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b; TrEMBL-Plants: tr|I3S9G7|I3S9G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4429545..4431857) extracted from Lotus japonicus Gifu genome v1.2.
CACATTTTCTCAAAGAAACAAGGTCAGGATCCGGAAGAAGAAGCATATTTCTTTTTTAAACGGTCTCACGCTTATCTCCC TCCTTCTTCTACTCACTCACAAACATACTAACTTTCCCTTCACACCAAAAAAAAAAACTCCAAATCTCCCCACTTTCTCT CTCTACACGCCAAGCATTTTCCGGCGGCAATGGCGGGTTACAGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTT CTGATCGGCGACTCCGGCGTCGGGAAGTCCAACCTCCTCTCCAGGTTCACCAAAAACGAGTTCAACCTCGAGTCTAAGTC CACCATCGGCGTTGAATTCGCTACCCGCACCTTGAATGTTGACTCCAAAGTCATCAAGTCTCAGATCTGGGACACCGCTG GCCAAGAGAGGTTTTCACTTTTCCCCTCTCTCATGTTCTTCATTTACCTTCAAATGCTGTTCGTAGTTTCAAGCTGAATC TTGTTCATGAATTTTCACTTTATCGATGTTGTCTCAATTTTTGGTCGGTGGATTCAAATCTTGGTTTCTTAAATTAGCAA CAACATTTTACCGTAGTTTTAGTTTCCTTAACAAACAAAGAAACATGATTTGGGTGTAGTGTAATTTGTCTACATAGTTT TGAGATTACCATGTTCATCCTGAAATGTTTTTATTTTTTATTTTTATCATTAATGAAAATTTTATATATTTTGTTATAGA TGTGCAAAAATAAGATCACAATTTCACATATTGAATTCTCAGTCAATGATTAGGATGACTTTACCCTTTGGAGCCAAATC TATGTAGATGTATTGTGGTATTTCTTAGTTTTTTTTATTGGTTTGTTCATTGATATTTTCTTGATGTTGCATAGGTTACT TAATTTGTTGTGAGCTTAAATCCAAGTCATAGTGTTGTGTTGTTGAACTGCTGGTTGGGTATCTAACTTTAAGCATTGTA GATTTATAAGGATTTGAAATGTTGATATTAGTGGGTTTCTGTTGGCTTTGATCATTTGAAATCTCAGTCAAACAGTAGCA TATGTCAAGCATGCAATAGCTAATTTCTAGGGCCTGTTTGTTGCAGAGTGTGTAATCTTTCAAATTCAAAATTTAAACAC CTAAGAAAAAGGGAGTAATTTGTTAATGAAATTAAGAGATAGGCAAGGTGGATACTACCACCTTATTGAGTATGTGGGTC TTCAAGTCTCAAATACTCGGTCCAATTCAACCATTGGTTTTGACTTTTGATATCAACAAGACTCTCTCAATGTGCTTAAG AAATTAATCAGCACAGTGAAGACGACTCCACATCTTTACGCGTACCTTAAGACAATGAGTCTGTGTTACTTCACACTTAT ATTTTTTTATAATCAAGAAATTTTCAACCATGTTGGAGCTTCACCACTCATTTAAATTTCCAACAAAATATTTATAGTTG AAGCAGCTGGGTATTTTATAACTAGTCACCTAATTGATCTTCCCTCTGCTTGGGGGCAGAGAGGTTACCTTTCCTTTTCA AAATAATCAACTTACAAAGAAGTTGTGAACTATTATTATTATGTATATAACTAGCCAAACCTGTAAACTTGAACTTTTCC ACCAAATCTCATGCTTCAAACTCACATTTCTCTTTACAGGTATCGTGCAATCACGAGTGCATACTATCGGGGTGCTCTAG GTGCACTTCTTGTGTATGATGTCACGCGACATGCAACATTTGAGAATGTCGACAGATGGCTCAAAGAGCTGCGGAACCAC ACAGATTCCAACATTGTTGTGATGCTTGTTGGGAACAAATCAGACCTTCGTCACCTTGTAGCTGTATCAACTGAGGACGG GAAGTCCTATGCTGAGAAAGAGTCATTGTACTTCATAGAAACCTCAGCACTTGAGGCTTCTAATGTAGAGAATGCATTTG CTGAAGTTCTGACTCAAATCTACAATGTTGTTAGCAAAAAAGCTGTTGAGGGGGCAGAAAATGGAACTGCATCTGTGCCA GCCAAGGGGGAGAAAATAGATCTTAAGAATGATGTGTCTGCTTTGAAGAGAGTTGGTTGCTGCTCAACCTGAGGCTGTTA AACATAATTGATATTCTACTAAGTATGTTGGCTTTCACTGACGTGTCTTAATTATTGTATTATTATTAGTTTATGATTTT TTTCCCTAGTAATTCATTGAATATGTTTCTTACTCTTAAAAAACTATTATGTGGTCTTACACAATTCTGCTTGACTAATT TTTTATATAAATTGCCTGATGCCTATCTTTTTTTTTTTTGTTACAATGATGCTTAACTTTTGGAAAATAATAC
CDS sequence (LotjaGi3g1v0041000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGTTACAGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTTCTGATCGGCGACTCCGGCGTCGGGAAGTC CAACCTCCTCTCCAGGTTCACCAAAAACGAGTTCAACCTCGAGTCTAAGTCCACCATCGGCGTTGAATTCGCTACCCGCA CCTTGAATGTTGACTCCAAAGTCATCAAGTCTCAGATCTGGGACACCGCTGGCCAAGAGAGGTATCGTGCAATCACGAGT GCATACTATCGGGGTGCTCTAGGTGCACTTCTTGTGTATGATGTCACGCGACATGCAACATTTGAGAATGTCGACAGATG GCTCAAAGAGCTGCGGAACCACACAGATTCCAACATTGTTGTGATGCTTGTTGGGAACAAATCAGACCTTCGTCACCTTG TAGCTGTATCAACTGAGGACGGGAAGTCCTATGCTGAGAAAGAGTCATTGTACTTCATAGAAACCTCAGCACTTGAGGCT TCTAATGTAGAGAATGCATTTGCTGAAGTTCTGACTCAAATCTACAATGTTGTTAGCAAAAAAGCTGTTGAGGGGGCAGA AAATGGAACTGCATCTGTGCCAGCCAAGGGGGAGAAAATAGATCTTAAGAATGATGTGTCTGCTTTGAAGAGAGTTGGTT GCTGCTCAACCTGA
Protein sequence (LotjaGi3g1v0041000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKSQIWDTAGQERYRAITS AYYRGALGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGNKSDLRHLVAVSTEDGKSYAEKESLYFIETSALEA SNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKRVGCCST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 216 | 213 | 3.1E-120 | – | |
| PANTHER | 4 | 216 | 213 | 3.1E-120 | – | |
| SUPERFAMILY | 9 | 180 | 172 | 5.55E-59 | ||
| ProSiteProfiles | 9 | 215 | 207 | 35.358 | – | |
| SMART | 11 | 177 | 167 | 5.4E-26 | – | |
| Gene3D | 11 | 203 | 193 | 5.0E-67 | – | |
| CDD | 11 | 175 | 165 | 4.21258E-125 | – | |
| TIGRFAM | 12 | 170 | 159 | 7.6E-39 | ||
| PRINTS | 14 | 35 | 22 | 7.3E-42 | – | |
| SMART | 14 | 177 | 164 | 3.0E-106 | – | |
| Pfam | 15 | 175 | 161 | 5.5E-61 | ||
| SMART | 16 | 177 | 162 | 5.0E-12 | – | |
| SMART | 19 | 209 | 191 | 1.1E-5 | – | |
| PRINTS | 37 | 53 | 17 | 7.3E-42 | – | |
| PRINTS | 55 | 77 | 23 | 7.3E-42 | – | |
| PRINTS | 117 | 130 | 14 | 7.3E-42 | – | |
| PRINTS | 152 | 174 | 23 | 7.3E-42 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0041000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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