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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0042100 |
| Transcript ID | LotjaGi3g1v0042100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT1G16890.2 ubiquitin-conjugating enzyme 36; Swiss-Prot: sp|Q9FZ48|UBC36_ARATH Ubiquitin-conjugating enzyme E2 36; TrEMBL-Plants: tr|A0A0V0HFI1|A0A0V0HFI1_SOLCH Putative ubiquitin-conjugating enzyme E2 36-like; Found in the gene: LotjaGi3g1v0042100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4512487..4517012) extracted from Lotus japonicus Gifu genome v1.2.
GCAGCACCTGGAATTAGTGCTTCCCCCTCCGAGGAGAATATGCGATATTTCAATGTGATGATCCTCGGACCGACCCAGTC ACCTTATGAAGGTAGTATTGAGTTCAATAGCATGATCATGTTACCTTAAATTGCTTCTAAATATATTGTCGGTTCAGTTG TGTCCGATTAAACAAATTTTAGCGATAATGTGATATAAATATCCATTTGATTTGTGTGTTCTGGAACAAGGTTAAACATG AAGAATTCCAGTGAAGATTTATGCTTTGTGTCTGTAGTCAAATGTATTTTGGGAATGAATAGTGGCATTAAAGTTTCATT GTATTGCTTTTTATTACGAAGCTGTATGCTTTATTCTTGAAGTGTTGTCAAGTAGCGGTTGTAGCGGCGCTATAGCGTAG CGCTCTGAGGCTCACCGCTATTTGCGCTATGAGGACTTGAAATAGTGGATTTTTGGCTTTCTGCTATTTTCCGCGATTAA CAATACTAAATTGTTGATTGTCTAAGTGTTTGTGTGGTCAAGCATTTCAAACTTTATTTTGGATGATTTTGATTTTGTAA AATTGATTTAGGTTAAAATAAATGAGTTCAGGAAGGATATAAATGAAAAGCTGGAGATAGGCCTTGGAAGCATATGGCTT TTGTCTAAGTAGAAGTAGAATAAAATATTTGGAATTCAAGTTTAGCAATGGACACACAGGCCTTAAGTTAAAGGTGCAGA TGATTGGAGAACTTAAAATACCTAAAGTTTTACATTTCAAGTATCTTGGGTCCAGATGCAATATGGCGGAGATAAAGGGA GATATAAACCATTGGATCCCAGCAAGGTGGACAATATGGAGGAGAGCATAAGATGTGATTTGTGAGAGAAAAATAGCACT CGGACTTGATTTTTTTTTTACCGCACAATGAAGACCTTCACTATTGTCTGGAACTGAATGTTGGGGGTGGTAAGTTTGAT ATAGCAGGGATTAGATTGTTAAGATGGATGAATGGTGATAGAAGACATGATAGGATTAGAAACACAATCATTGGACAGAA GGTTGGGGTAGCTCTATTTGCAGAAAAGATGGTAAAGTCCTGTTTTAGGTGGTTTGGACGTATGGAGAAGAGATTAGATT GTTGAAGCACTTATAATGATGGTTGACCAGATTGGAGTCCAATAGTTGGGGGTACAAAGGGACCTAGGATGACTGTGACA AATCATTCGAAAGGATTTAGAGGTTAATAATATATCTGAGGACCCACCGCTATCCGCTATTTTCTGCTATTCTCCGCTAT GCTCTGCTTTGAAGGCTCAAAATAGAGGATTTTTGGCTTTCCGCTATTTTCCATGATCCGTGATTAGCAATACTGTGGCA TATTGATATATGTAGTTGACCCCATCTAGTAGGGAAAGTCTTAGTGTTTTCTTGTTGATTTTATTTAGCTCAAAATGAAT TTGAAGTGAATTTATATTATAGACACCTTTATCAAATAGGTAATTTATTTGTGAAATTAATATTTTCTCTCTATTATTCC AAAATTCAAACCCCCCAATGTAAAGTAAATGCTGCTTCTCTTTAAACCCCTGTTCATGGACAAACTTGATCCGAAGAAAA AATAGCCATTCAAGATTTGAACCATAAAAACCAGTCTGAAGGTGTCAAACATGGGTTTTGGTTTGGCATTTGCAGATTAT CAATCTTCTTATGAACCTGTTAGATAGAAGGTTGCCTGTAGTTTTCTGGGTGTACAATGTGTGGCTTTGACATGAAATGG AGGAGTAGTTTATATGGGAATGCTCATGCATAATAGTAACTTCACTCTCGTTCATCACTATCTGATCTATGTAGGATCAC TTTCATTAGATTAAATAGGAATTCTTTGTTTTCCTTTTTTACTAAAATATTGTGTCGACCAAAATAGATTAAATGATATT CGTGCTTACATGTGGTGTTTGTGTTATCAATTCCGCAAAAGAACTTTAACTTAATAATTGGACAAGCTTATTTTCTCCTC TACATCATAATAACTAGTTACTACTATATGCTCATGGTAATTTTGCTCCGTTTGGAATCTCAAAAAGCAATTCTTTTGAA TTTGTTAGTGGAGGTTTAACGTAGCATTTAGAATGAGGTTTGCTTGCCTACCTGCATCTCTTGATTATTAGATATCTTTA AAGGGTTATCTAGCTACAAGATTTAGAACCTTTGGTTTTTATGGGTATCATCACTTTTATTCATTCTTTATTGTTACGCT TGATTACTTTCAAAGGATCTTGATTGTCTTATCCTTGTTCCCTTTGAAATTACATTAAGGTAAAATATTACAACTTTGTG GATTACCTGTTGAGAGATGGTAATTTTCTTTAAATGGCCTAGATTCTGTATATGGTTGGTTATAGTCGTAATATTTAAAT AAAGGATTGAAGTTTTCATTTTGCATGGTGAGCCTTACATTGAAATGCTTTCTTCATTTTGATGCAAGTTCTTTCTTTCT TGATTCTGTGTTTGTAAGAGCAGGAAGGAATGGGTTATTGTGTACTGTAAAATTTCAAAATCATTGATTGTGATGATAGC TTCAAACTTGTAATTCGATCTACAGATATTAACCCATTGTGCTTCTACTAATATACTTTTTTCTTGTCTGTATTACTAGG AGGAGTTTTTAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTACCACAGTTTTCTTTTGGTG TTAAGTTTTTGCTGATTTCTTATACACCAAAAAAATAACTAATTGTGAAACATTCATAGGTGTATGGTTGCTTATAGTTC CATATGTAGTAAATCTGTTTTTCTTTTTAACTCTTGGTATTTGAAATCTAATCGGATAGGACCCCTATGCAATTAATTGA ATAGGCTTCTGCTCTCCTGTCTTCTCCTGATTGCCTTCCAAACTGACACTGTTGGAACTTGTAGCTGATATAAATGACTA AATATAATGTCCTTTTCATTTCCTATTAAATTGAAATCTTAACTGTACAAGCTGGGGTGTCATACTGTTGAACTTTCCTA TACGTTCTGTGATGCTGTTGGATGTTGCAGGATTTCTTGAGGGGTCGTTTGAACTGGGAGGGGGGTATTTGGAGGGAAAG GATTGGGGGTGGGGGGGCATAGTTTTTTATTTTTAAAAAATACTATCAAATTTGTTAATTTTTAATAATAAAAGCTATGG AATGATAAATTAGTATAAACATAATATATAAATACTCATCACATATTTATTACAAAAATATTATATTTCTTCTAACTTAA AGATGAAAATTAAGCCCCCCCTCCATTTCCCTCCAACATCCCCCTTTCCAAACAACCCCTTAGCCCCTTAGGATTTAGGA CTACGCTACTAACTAGCAAATTCTGGCTATTACTAATTGAGTTTAAGGAAGGCGTGTTTCTACAGCTCTTCGGAGTTCTG TCTAACTGATTGCGATTTCAATTGTCCAAGGATCTTGAGTCTCTTTCTCTTTCAGGAATATTGTGGTTCTATCTCCAATT TGTGTGATTGTTTGGTTTCCTCATATTTTATTGGCTAATCAAGGTTTGATATCCTTTTAATGGATCTAAATGCACATTTC TTTTTACAGGTCAGATTTCTAACAAAAATATATCATCCAAACATTGATAAGGTGAGTTCAGCTTTCCCGAAGTTCTCAGT TCTTCAGTAGTTATTTTCCTCTTACAAGCTCTTGTTTAATATAGCTTGGCAGGATATGTCTCGATATCCTTAAAGATAAG TGGAGTCCAGCCCTTCAGATACGCACTGTTCTTTTGAGGTACTTATTTTCTTTTATGCTACTGGATGTCCATATTTTCTT GGACCTATTTATTTCCTGAGGAGATGGGACAATGGTCATAGTTGTTTCGGTGTTACAGTCTTGACATTCACATGCTAAAA TGTTATTTCCCCAAAACATTTGATGGCACATATATAGTGTCAAATATACAGGTCTGTTATACGAATGTTTTTAACACTAC TGTGATTGTTCTGCTAGCACGAAAGAATTTTTCATTTTGTTTGGTAGAATATGGAAATTTCGAACTAAGAAGTAAGAATC ATTGGTCGTCTTTAGACTTTTGGCTCATTCAGTGCCTGACTAGTTATTTTTAATGGGGGGGGGGGTTATGTTCCACCTAG TGAGGCCACGCAAAATGTCTCACAGTGATGGGAATTGCTGCAGGGCAAGTAAATGGAACTATATAATTAATCTTCTTAGT TTGAGAGAGCATTGTGTACTGATAATGAGTTTTTTTTTGTCACTTTATAGCATTCAAGCACTTCTGAGTGCACCAAACCC TGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAGTCTAATGAGGTCGAGGCTGTTGAAACAGGTATGTTTTCTT CGTATGATTTGCATATAAAAAAATAATCAGTATTGAATGCAACATTTACATTCTCTTATTGACTTCAATGTGGCATTGGA ATCTGCAGCGAAGGAATGGACCAGATTATATGCTAGTGGCGCCTGA
CDS sequence (LotjaGi3g1v0042100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGATATTTCAATGTGATGATCCTCGGACCGACCCAGTCACCTTATGAAGGAGGAGTTTTTAAGTTAGAACTATTTTT GCCAGAAGAATATCCAATGGCTGCTCCAAAGGTCAGATTTCTAACAAAAATATATCATCCAAACATTGATAAGCTTGGCA GGATATGTCTCGATATCCTTAAAGATAAGTGGAGTCCAGCCCTTCAGATACGCACTGTTCTTTTGAGCATTCAAGCACTT CTGAGTGCACCAAACCCTGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAGTCTAATGAGGTCGAGGCTGTTGA AACAGCGAAGGAATGGACCAGATTATATGCTAGTGGCGCCTGA
Protein sequence (LotjaGi3g1v0042100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQAL LSAPNPDDPLSENIAKHWKSNEVEAVETAKEWTRLYASGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 118 | 118 | 3.2E-85 | – | |
| SMART | 1 | 118 | 118 | 6.8E-47 | – | |
| PANTHER | 1 | 118 | 118 | 3.2E-85 | – | |
| ProSiteProfiles | 1 | 107 | 107 | 36.818 | ||
| Gene3D | 1 | 119 | 119 | 1.0E-55 | ||
| SUPERFAMILY | 1 | 118 | 118 | 7.04E-47 | ||
| Pfam | 2 | 112 | 111 | 1.1E-43 | ||
| CDD | 4 | 113 | 110 | 9.94178E-54 | ||
| ProSitePatterns | 45 | 60 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0042100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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