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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0044600 |
| Transcript ID | LotjaGi3g1v0044600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aminotransferase family protein; TAIR: AT5G53970.1 Tyrosine transaminase family protein; Swiss-Prot: sp|Q9FN30|TAT2_ARATH Probable aminotransferase TAT2; TrEMBL-Plants: tr|I3S6E7|I3S6E7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0044600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4756614..4759205) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGTGACAGTGCAATTGCTGAATATCTGTCACGTGATCTCCCTTACCAGCTATCATCTGATGATGTTTTCATCACT AGTGGATGCACACAAGCTATTGATGTTTCGATGGCGCTGCTTGCTCGCCCCGGTGCGAACATCTTGCTTCCAAGACCAGG CTTCCCAATCTATGAACTTTCTGCGTCATTTAGACAAGTAGAAGTGAGGCATTATGATCTTCTGCCAGAGAAAGGTTGGG AGGTTGATCTAGATGCTATTGAAGCTCTTGCAGATCAGAACACAGTTGCATTGGTGATTATAAACCCTGGGAATCCTTGT GGAAATGTGTATAGTTACCATCAGTTGGAGAAGGTCAGTTACCAAAAATATATATAGCCCCAAACCAAATAACTTGTTCG ACAGAGAACTTGATCCATTGGGATCAAGATCTTCTGTTCCCAAATGATATCTCAATTTTCTGTCCCACCAATAAAAAACG ACATGAGTTGAGCAGTTATAAACTCACATGGTGGTTTTTAATAATCATGTAACATTTTATTGGTGAGACAGAGAATAAGA CACAGTTTGGACAAATTTCAATATGAGAACTTGTATCTCAAATTTGATAGCATTAAGTGGAGTTATTGAATCATTTTTAT ATTGGACTTTAGATTGCAGAAACTGCAAAAAGGCTTGGGACTGTTGTGATTGCTGATGAAGTTTATGGTCACCTTGCATT TGGGGCCAATCCCTTTGTACCAATGGGAATTTTTGGCTCTACTGTTCCTGTTATCACTCTTGGATCCCTATCTAAGAGAT GGATAGTACCTGGATGGAGGCTTGGTTGGTTTGTGACAAATGATCCATGTGGTACTTTTAGGAAACCTAAGGTTCTCTTC ACTCCCTTCCATTAAATGTTTAAGCCACTTTTAAATATTTTTAACTGAAATCATAGATCATTGATCCCTTGGTACATAGA TCATTGATCCTTAACTATGTAATGCTTGATTTTGTTTGTGCTTACCTACCTCTTTGTTTACTTCAGTTTTTTGTACTGCT CTACAAGGAAGTTCAACCATTGATTGTATTTAACTGCACTACTTTAAAAATATAAAGTCTCATAGTTAAAATATTTTACT GCTAAGTCTAAATTCTAAATGGTTCTCTGCAGTACTCAATTAATGACCATGTGTGATCTTAAAAGTCACGTTTTTTATGC AGGTAGTCGAGCGCATTAAAAAGTATTTTGATCTTTTGGGCGGTCCAGCCACTTTCATTCAGGTTATCTAATTTTCTTTT TCCATGCTTATTTCAAAGTATAGAAATGGATGTATGTTCTATTTTGGCTAATAATAATTTCTAATTGAAGAAACTGCAAG AGAATGATCACAATTTTAGTTAAAGCTTTGAAACTACCATCTGAAAAAGAACTAACAGAATATGGATCATAATCATTATA TATCCAGATTAAAGATTTCGGCGAGTTTTAGTTTGCTGCCGAAAGCCTTACACAACTTTCATCCTTTATCTGGGCTTAGG ACTAGATATGCAAAAGCATAGGCTGGGTTAGATAGAGAAGCATGAAAGAAAGAAAAAGAAAATGTTAGATTTCAAAGAAC ACTATAGTAAACAAGATTTATCTCTATACTAGAAGCAATCCTAGAAAGACATTTTACTGAAAAAATATTCAATTCTACTC CGAAAACTCAATAGCTCTTGTGATGTAGTATTCATATGCCGCTGCTAGTTCTGTATTCATATGACCTGCATCTATCAGTT ACTTTGTTCTTCTACCTGATTGATAAGACTTCTTGTTTGACAGGCGGCAGTACCTCGCATAATTAAGCAGACTGAAGAGG TTTTCTTCAAGAAAACCGTTGAGATTTTGAAGTATACCTCAGAAATATGTTGTAAAAAGATAGAGGATATTCCATGCATT TTTTGCCCTTGCAAACCTGAAGGGTCCATGGCTATGATGGTAAGAAAGTAGGGAAATCTATCACATAATAGCAGTTTTTT GAGAACAGAATAAATGTTTCTATGAAGACAATCTTCTTTATTTATTCTTGAATGAAATGCAGGTGAAACTGAATCTTTCG CTGCTGGAAGATATTAGTGATGACATTGATTTCTCTTTCAAACTTGCAAAGGAGGAATCTGTTATCATTCTTCCAGGTAC CATTTTGCAACTCATGCTTTAATTTTCCATTTTGTGCATCTTCTATTAGGAGAGTTGCTCATTTTGTAGAGAATAATAAA GGCACTTGTTAGTTTTTGCTTCAGGACTTTCTGTTTGTTATCCTCATTTTAACTTGATTAATGAAAACATGTCCACATAA TTCTGCAAGGGACTAAAATCGATCACATTTTTCATCTTTGGAGGATTAAATTGATCGCAATTTTCATCTTTGAGTGACCA AATTGATGGCTTATGAATACATTTAATTAAAATGACTCATAAGTTTGCTAATTTATTTTGTTATTCTTTGCAGGAACTGC AGTAGGGCTTAAAGATTGGCTTCGGATCACTTTTGCTGCTGACCCTTCTGCACTTGCAGAGGGCATGGATAGGATACAAT GTTTTTGTCAAAGGCATGCTAAAAAACAGTAA
CDS sequence (LotjaGi3g1v0044600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTGCTTGCTCGCCCCGGTGCGAACATCTTGCTTCCAAGACCAGGCTTCCCAATCTATGAACTTTCTGCGTCATT TAGACAAGTAGAAGTGAGGCATTATGATCTTCTGCCAGAGAAAGGTTGGGAGGTTGATCTAGATGCTATTGAAGCTCTTG CAGATCAGAACACAGTTGCATTGGTGATTATAAACCCTGGGAATCCTTGTGGAAATGTGTATAGTTACCATCAGTTGGAG AAGATTGCAGAAACTGCAAAAAGGCTTGGGACTGTTGTGATTGCTGATGAAGTTTATGGTCACCTTGCATTTGGGGCCAA TCCCTTTGTACCAATGGGAATTTTTGGCTCTACTGTTCCTGTTATCACTCTTGGATCCCTATCTAAGAGATGGATAGTAC CTGGATGGAGGCTTGGTTGGTTTGTGACAAATGATCCATGTGGTACTTTTAGGAAACCTAAGGTAGTCGAGCGCATTAAA AAGTATTTTGATCTTTTGGGCGGTCCAGCCACTTTCATTCAGGCGGCAGTACCTCGCATAATTAAGCAGACTGAAGAGGT TTTCTTCAAGAAAACCGTTGAGATTTTGAAGTATACCTCAGAAATATGTTGTAAAAAGATAGAGGATATTCCATGCATTT TTTGCCCTTGCAAACCTGAAGGGTCCATGGCTATGATGGTGAAACTGAATCTTTCGCTGCTGGAAGATATTAGTGATGAC ATTGATTTCTCTTTCAAACTTGCAAAGGAGGAATCTGTTATCATTCTTCCAGGAACTGCAGTAGGGCTTAAAGATTGGCT TCGGATCACTTTTGCTGCTGACCCTTCTGCACTTGCAGAGGGCATGGATAGGATACAATGTTTTTGTCAAAGGCATGCTA AAAAACAGTAA
Protein sequence (LotjaGi3g1v0044600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLARPGANILLPRPGFPIYELSASFRQVEVRHYDLLPEKGWEVDLDAIEALADQNTVALVIINPGNPCGNVYSYHQLE KIAETAKRLGTVVIADEVYGHLAFGANPFVPMGIFGSTVPVITLGSLSKRWIVPGWRLGWFVTNDPCGTFRKPKVVERIK KYFDLLGGPATFIQAAVPRIIKQTEEVFFKKTVEILKYTSEICCKKIEDIPCIFCPCKPEGSMAMMVKLNLSLLEDISDD IDFSFKLAKEESVIILPGTAVGLKDWLRITFAADPSALAEGMDRIQCFCQRHAKKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 296 | 296 | 2.8E-181 | – | |
| PANTHER | 1 | 296 | 296 | 2.8E-181 | – | |
| CDD | 1 | 286 | 286 | 2.03741E-65 | – | |
| Pfam | 2 | 285 | 284 | 4.3E-44 | ||
| Gene3D | 2 | 184 | 183 | 4.9E-89 | ||
| SUPERFAMILY | 2 | 290 | 289 | 2.39E-63 | ||
| TIGRFAM | 3 | 293 | 291 | 2.0E-125 | ||
| Gene3D | 185 | 289 | 105 | 4.9E-89 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Transaminase activity | Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi3g1v0044600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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