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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0049300 |
| Transcript ID | LotjaGi3g1v0049300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G21705.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial; TrEMBL-Plants: tr|A0A1J7GFG4|A0A1J7GFG4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5160838..5163794) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAGCACACTCCTAAGCATCATAATCGAGCCCTCAAAGCTAAAACAACCCCTTAAAACAGAAACCAAATTTTAAGGAA ATAAAGCAAAAAAACCTCTATCTGTCACTCCAAGGTTTGGAATGTTTCAACCCGACCCGTAAAAGCGTTACCATTAACAC GCGACTGGTCTCTCTTCCTTACTGAGCTAGTTTCGCAACCTCACCACCCTCCCTAGCTTCTCAACTCCTCTACCGGCGTT GGAAATGGCATCATCACCGTTCTCTGCGATCCTCCGCAACAAGTTCCATAGCTTCACCGCCACATTTCAGCTTCTGAGAC CGTATTGCTCCGCCTCCACCACTGTCACGATTAACCGGAGAAACCTCTACTCCAGAATCAGCCCCCTCGGTGACCCTTCT CTCAGCGTGGTTCCCGTTCTCGAAAACTGGCTCCAAGAGGGTCACGCCGTCAGGGACCAGGAGCTCCAGCGTATCGTCAA AACTCTACGCACCCGGAAACGCTTCACTCAAGCTCTACAGGTTAGCTCAACATTTAGGGGTTTCAATTTCATGAACTGTT TTTTTTTCTCTGTTCCTTGATTGTTCAGCTTCTTAGCAAATGTAACTAGTTGAGTATTGGAAATGAGGAAGAAAATGCAC CTGGAGACTTTTGCTTCCACAGATTTATATTATTTTTTGAATTAAGTTTTTTGTTTTTTAAATCAATAAGGAAAGAGATA CAAAGAAAATGTTTTGTTCACTCTCATTCCGTCCCCACCTTTAGAGAGAAATAGGAGCTGAAGAGGGAGAAGCGACGAAT ATGATAAGTGATGTGATAGAACAGAGCGATAAACAAAAACTGGCTAGAAATGGGACATAGGAGAAACTAGCTGTGAATGT ATCATAGTTGTAGATACAATTGGCTACCATGAGTCGTTGGTTCGAGTGGTAAGTGATGTGATAGAACAGAGCGATAGGAA GTAAAACTGGCTAGAAATGGGACATAGGAGAAACTAGTTGTGAATGTATCAAAGTTGTAGATACATTTGGCTACCGTGAG TTGTTGGTTCGAGTGATAATAACTATTCCGCTTTATAAGGTCATGAGTCTGAATCTAGTAGCTAGCCCCATCGGTGGATG CTCCCTGCTCGAACAATATTGTCTTTCATGGAGGATAATGTGTTGGACAAGATTTTTTGCCTACATGGCCTCAAAGCAAC TTTCAGATGGTGGATGTTCTCAGACCGGAAAAATGTTCATTCTATTGTTAGAGCTTATTGGAGCTTAATGCTTATCAACT AGAAAAGAACACTAGATAAACTGCAAGTCTGCAATAAGTGCTCTCTTGTTTGCATCCAGACGGATTGAAAATGACAAGAC ATTGCCAAAGAAGAATAAAAGAAATAAAACCTGAAATGCAATCTTTTCTTTCTTTAAAATTTATTCACTTGTTCCTGGTT ATGCAGTAATTACTGAGATATCTTGCATCTTTGATGATAAATTCAGGTTTCTGAATGGATGAGTAGCAAAGGGCTCTGCC CAATTTTGCCAGGTGACCGAGCCGTGCAGCTAGAACTTATTGGTAGAGTTCGTGGACTGGAGAGTGCAGAGAGCTATTTT CAGAATTTGAGTGATAGTGACAAAACTGAAAAGGTTCATGGTGCCCTTTTGAATTGTTATGTGATGGCAGGATCAGTTGA CAAGTCACTCTCCCAGATGCAGAAGATGAAGGACATGGGTTTTGTTTCTCCTCTCCATTACAACAATATAATGAGCCTCT ACACACGAACTGAACAACATGAGAAAGTCCCAGATGTTTTGGCAATGATGAAAGAAGACGGTGTTTCTCCTGACATTTTC AGCTACAGGATTTGCTTAAACTCATATGGCGCGAGATCTGACCTCGAGAATATGGAGAAACTGTTGGAGAAAATTGAAAC AGAAGGCGACATTGCCGTGGATTGGATGACATATTCTACGGTGGCTAACTTCTACGTGAAAGCAGGCCTGAAAGATAAAG CTCTTATCTACCTGAAGAAGTGTGAGGACAAGGCATACAAACGCGACGCAGTTGCTTACAATCATATGATTTCACATTAT GCAAGTCTTGGGAAGAAGAAAGACATGATGAGATTGTGGAAACTGCAGAAAGATAACTGTAAGAAGCAACTTAATAGGGA ATATATAACCATGTTGGGTTGTCTGGTGAAGTTAGGGGACCTTGAGGAAGCTGAGAAATTACTTGGTCAGTGGGAGTTAT CTGGTAACACTTACGATTTCAAGGTGCCAAACATCCTCCTGATTGGGTATTCACGGAAGGGATTGATTGAAAAGGCAGAA ACGATGCTCCGAAGCATGGTTGATAAAGGGAAGACTCCTACTCCTAACAGTTGGTCTATTATAGCATCTGGGCATGTGGC CAAGGAGAACATGGAGAAGGCATTTCAGTGCTTCAAGGAGGCTTTGGCTGTGCTAGCTGAGAATAAAGGTTGGAGACCAA AATCTGATGTTGTTTCCAGCATATTGAGTTGGGTTACTGATAACAGAGATATAGAGGAAGTAGAAGATTTTGTAAATTCA TTGAAGAAAGTGATGTCAATGAATAGGGACATGTATCTGTCTTTGATCAAGCTATATGTTAGATGTGGGAGGGAAGTAGA TGGGGTTTTAGAGAGCATGAAAGCTGACAATATTGAGCTCGATGAAGAGATGGAAGAAATTCTCAACTCAAGATTGCAAC AATAGTGATTTTTTGTTTTCCCTACCTTTTTTTTTTGTCTTGCAACAATTTTATATTGCATCATTTGCATTTTATCTCCT CTCTTTTCTGGTGTAAGTGTATCAAGTTTTCATTGAGGAAGGTGGGCATCTAAGAAAACGTGTTTGATCTGTTTTGAGGT AGAAATATGTTTTTGGTCATGCTAAATATTTGGTCATATAATTTCAAGACGTATGGGATGAGTCACAAATTTTGGAA
CDS sequence (LotjaGi3g1v0049300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCATCACCGTTCTCTGCGATCCTCCGCAACAAGTTCCATAGCTTCACCGCCACATTTCAGCTTCTGAGACCGTA TTGCTCCGCCTCCACCACTGTCACGATTAACCGGAGAAACCTCTACTCCAGAATCAGCCCCCTCGGTGACCCTTCTCTCA GCGTGGTTCCCGTTCTCGAAAACTGGCTCCAAGAGGGTCACGCCGTCAGGGACCAGGAGCTCCAGCGTATCGTCAAAACT CTACGCACCCGGAAACGCTTCACTCAAGCTCTACAGGTTTCTGAATGGATGAGTAGCAAAGGGCTCTGCCCAATTTTGCC AGGTGACCGAGCCGTGCAGCTAGAACTTATTGGTAGAGTTCGTGGACTGGAGAGTGCAGAGAGCTATTTTCAGAATTTGA GTGATAGTGACAAAACTGAAAAGGTTCATGGTGCCCTTTTGAATTGTTATGTGATGGCAGGATCAGTTGACAAGTCACTC TCCCAGATGCAGAAGATGAAGGACATGGGTTTTGTTTCTCCTCTCCATTACAACAATATAATGAGCCTCTACACACGAAC TGAACAACATGAGAAAGTCCCAGATGTTTTGGCAATGATGAAAGAAGACGGTGTTTCTCCTGACATTTTCAGCTACAGGA TTTGCTTAAACTCATATGGCGCGAGATCTGACCTCGAGAATATGGAGAAACTGTTGGAGAAAATTGAAACAGAAGGCGAC ATTGCCGTGGATTGGATGACATATTCTACGGTGGCTAACTTCTACGTGAAAGCAGGCCTGAAAGATAAAGCTCTTATCTA CCTGAAGAAGTGTGAGGACAAGGCATACAAACGCGACGCAGTTGCTTACAATCATATGATTTCACATTATGCAAGTCTTG GGAAGAAGAAAGACATGATGAGATTGTGGAAACTGCAGAAAGATAACTGTAAGAAGCAACTTAATAGGGAATATATAACC ATGTTGGGTTGTCTGGTGAAGTTAGGGGACCTTGAGGAAGCTGAGAAATTACTTGGTCAGTGGGAGTTATCTGGTAACAC TTACGATTTCAAGGTGCCAAACATCCTCCTGATTGGGTATTCACGGAAGGGATTGATTGAAAAGGCAGAAACGATGCTCC GAAGCATGGTTGATAAAGGGAAGACTCCTACTCCTAACAGTTGGTCTATTATAGCATCTGGGCATGTGGCCAAGGAGAAC ATGGAGAAGGCATTTCAGTGCTTCAAGGAGGCTTTGGCTGTGCTAGCTGAGAATAAAGGTTGGAGACCAAAATCTGATGT TGTTTCCAGCATATTGAGTTGGGTTACTGATAACAGAGATATAGAGGAAGTAGAAGATTTTGTAAATTCATTGAAGAAAG TGATGTCAATGAATAGGGACATGTATCTGTCTTTGATCAAGCTATATGTTAGATGTGGGAGGGAAGTAGATGGGGTTTTA GAGAGCATGAAAGCTGACAATATTGAGCTCGATGAAGAGATGGAAGAAATTCTCAACTCAAGATTGCAACAATAG
Protein sequence (LotjaGi3g1v0049300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSPFSAILRNKFHSFTATFQLLRPYCSASTTVTINRRNLYSRISPLGDPSLSVVPVLENWLQEGHAVRDQELQRIVKT LRTRKRFTQALQVSEWMSSKGLCPILPGDRAVQLELIGRVRGLESAESYFQNLSDSDKTEKVHGALLNCYVMAGSVDKSL SQMQKMKDMGFVSPLHYNNIMSLYTRTEQHEKVPDVLAMMKEDGVSPDIFSYRICLNSYGARSDLENMEKLLEKIETEGD IAVDWMTYSTVANFYVKAGLKDKALIYLKKCEDKAYKRDAVAYNHMISHYASLGKKKDMMRLWKLQKDNCKKQLNREYIT MLGCLVKLGDLEEAEKLLGQWELSGNTYDFKVPNILLIGYSRKGLIEKAETMLRSMVDKGKTPTPNSWSIIASGHVAKEN MEKAFQCFKEALAVLAENKGWRPKSDVVSSILSWVTDNRDIEEVEDFVNSLKKVMSMNRDMYLSLIKLYVRCGREVDGVL ESMKADNIELDEEMEEILNSRLQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 502 | 502 | 1.5E-242 | – | |
| PANTHER | 1 | 502 | 502 | 1.5E-242 | – | |
| ProSiteProfiles | 70 | 104 | 35 | 5.656 | ||
| Gene3D | 70 | 241 | 172 | 2.3E-18 | ||
| ProSiteProfiles | 139 | 169 | 31 | 6.533 | ||
| Pfam | 145 | 171 | 27 | 0.082 | ||
| ProSiteProfiles | 173 | 207 | 35 | 9.317 | ||
| Pfam | 177 | 219 | 43 | 2.6E-7 | ||
| TIGRFAM | 177 | 209 | 33 | 1.0E-4 | ||
| ProSiteProfiles | 208 | 242 | 35 | 7.103 | ||
| SUPERFAMILY | 222 | 412 | 191 | 3.66E-7 | – | |
| Gene3D | 242 | 350 | 109 | 1.1E-12 | ||
| ProSiteProfiles | 244 | 278 | 35 | 6.917 | ||
| ProSiteProfiles | 279 | 309 | 31 | 7.618 | ||
| Pfam | 281 | 304 | 24 | 0.27 | ||
| ProSiteProfiles | 314 | 348 | 35 | 6.5 | ||
| Pfam | 318 | 344 | 27 | 0.01 | ||
| ProSiteProfiles | 349 | 383 | 35 | 9.657 | ||
| Gene3D | 351 | 504 | 154 | 1.3E-15 | ||
| Pfam | 354 | 380 | 27 | 3.9E-4 | ||
| TIGRFAM | 354 | 384 | 31 | 8.8E-5 | ||
| ProSiteProfiles | 384 | 414 | 31 | 5.623 | ||
| Pfam | 387 | 410 | 24 | 0.92 | ||
| Coils | 480 | 500 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0049300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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