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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0050000 |
| Transcript ID | LotjaGi3g1v0050000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT1G52900.1 Toll-Interleukin-Resistance (TIR) domain family protein; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|I1KDZ9|I1KDZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5217249..5219667) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCTTGCACATACAAGTTTGAAAAAAGACTACAAAGCAGCTAATTTAGAAAGGAGAAAAAAATCCTAGAAAAGGGCAC TTCTAGATCTCTTGTAGTAGAAAGCTATTATAGCAGTATAGCAGCATCAGCATGCATCGTTCCTTGTCAACAAGCTTTCA AGCCAGAATTATAAGCCAGCTGCAAGTTCAAAACCAGGTGCCGAAGGTGGTTATTCAGGAGCCCTGTGACTTGTTCATAA ACCACAGAAGCATGGACACAAAAAGAACTGTTGCTACTCTAATCTATGATCATCTTCGAAGGTTAGGCTTTCACCCTTTC TTGGACAACAAGAACATGAAGCCAGGGGACAAGCTTTTTGACAAAATCAACGCTGCGATCATGGAGTGCAAGGTTGGCTT AGCGGTTATCTCACCTCGTTACTGTGAATCCTATTTCTGTCTTCACGAGCTTGCTCTACTTATGGAGTGCAAGAAGAAGG TGATACCAATTTTTGTTGATATAAAACCATCTCAGTTAGGTGTCATCAACAACAGAAATTGGACAAAAGAGGACCTTGAC CGTTTCAAAATGGCTCTTGAGGAGGCAAAGTACACTGTGGGTCTCATCTTCAACTCCTCACAAGGGTATAATTTTACAAA CGGCAGCCCTGATTTCTTTACCATCATTTTCTTCCGCTAAACACTTAAAATTTGAGACGGTTTTTGATAGCTGAGGTTAT TTTTTAAATAAACTTTGCAATTTGTGGTGGTTAAAAATCTCCACAACTTTTCAAATTGGTTTTCACAATTTAAAATTCTT TTTAAATATTTTTTGTCAATCCCTTTCCCCTTCTTCCAATTTCTCTTACCCTTCCCTTCTTAGCCATCATATAATGATTC TAATCTCCACAACTGCCAACCAACTGTCCCTGAATGCATGATAACTCAAATGTCCTTGAGGGATATGTAAGTACAGGTGC AGGATCGATTATTGCAAAGGATAAAACTCCCTCCATACAAAAAAAAACAGTGGTTGACAAGAAAAACAACCCAACCACCA CACAACCTCCACATCCATTCCCCAACTTTTTTTTTCTTTTACAAGAGTAAAAGCTATGAATTTTATTTTCAAGGGCATTT TAAATTTGAGAGTATAAGTCAGGGACTAAAAAAAAATTACTCTTACTTCTTTATTTATATATATATATATATATAATATA TACTTGAACAAATTTTTCTTGAATAGTATTAGACCGAAAGCATGTAGGCTTAAGATGGTGTTAAAGGTCTAGGAGAGTGT TTGGGCTTTAGTTGTGAGTGCGATCTAGTCCAAAAAATTTAAAGTAGTCGGACTTCCAACATTCTCACTTATAAACTATT GTTTAATTTCTTCTTCATTCCATTCATGCGAGACTTCTTCTTTAGTTTCTGCACTCTTCCTCATGTTTAACTTGACAAAT CAAGCTAGATTTGTTTGGCCTAAACTTATACTCAAGTGGACCGTTCGTATGAGCTTGTGCTCTTTCCGTCAGAACTTAAT TAAGTCTCATGTGCCTGTGACTTTATTTTAGTTGATAATTGTTTTTCTAGTAACCTTTTTTTTTCATCTTTTTTTGGATA GTACGTGGGTCGTTGGGTTTTTTACGGTATGATACAACTTATTGAATTGAATGGGGATGAGTAACTCACATGGTTGAGAT AAGGGTGAAATGTCAGGGTTCGAATTCTGATGAGGAATAATTTATAGTAACATTTGCTTATAAAAAAAACTTATTGAATT GAATGTGTGCATATCTAAAATGGTGCTAAAGATGCGAGGGAGCTTTTGAGCTTTAATTCTGTATTGTTCTAGTCCAAAAA ATTTAATGCAGTTGGATTTCCAACACATAGAAATTGTTTGGTTTAATAAAACAAAAAATGATTCGTGTATGTCATTTTTT ATCACACCAACGAACTTGGTTTATAATAGTTTTTTATTGCCACAAACTGTAAAACTTTTTAACTTTGCAGTTTGTAAAGT TAGAAATTATTTCAAACGGTAGGTGTTATTTATGTAAAAAAAAACTACTGATACCGATTAGTATTGGTAATAAAATTTTC AACAAATATAACCCGGGGATTTCTTCCACGTATTTTACTTTTGTTTTTTTTTTTCAAATGTAGGAATTTCTCCGATATCG TGACTAGTGCTTCTGATATCATCATCAAGAACTTGGCAGAAGTTGAGGATGAAGATATGCAGTATCCATGCATTGCCAGC TAACACAATATACCACCATGTAACCTTCTCCCTGTTTTCTAGGTAAAAGCTGTACAAAATTACAAATTATACAATACACA AAATAAAAGTGCAGATTCCTAGCTTGTACAGTGTATCACATAGCAATGTAATGAAGCGTGTTCATATAAGTTATATATGG TGTGGCTCCATGTTCCTCG
CDS sequence (LotjaGi3g1v0050000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATCGTTCCTTGTCAACAAGCTTTCAAGCCAGAATTATAAGCCAGCTGCAAGTTCAAAACCAGGTGCCGAAGGTGGT TATTCAGGAGCCCTGTGACTTGTTCATAAACCACAGAAGCATGGACACAAAAAGAACTGTTGCTACTCTAATCTATGATC ATCTTCGAAGGTTAGGCTTTCACCCTTTCTTGGACAACAAGAACATGAAGCCAGGGGACAAGCTTTTTGACAAAATCAAC GCTGCGATCATGGAGTGCAAGGTTGGCTTAGCGGTTATCTCACCTCGTTACTGTGAATCCTATTTCTGTCTTCACGAGCT TGCTCTACTTATGGAGTGCAAGAAGAAGGTGATACCAATTTTTGTTGATATAAAACCATCTCAGTTAGGTGTCATCAACA ACAGAAATTGGACAAAAGAGGACCTTGACCGTTTCAAAATGGCTCTTGAGGAGGCAAAGTACACTGTGGGTCTCATCTTC AACTCCTCACAAGGGAATTTCTCCGATATCGTGACTAGTGCTTCTGATATCATCATCAAGAACTTGGCAGAAGTTGAGGA TGAAGATATGCAGTATCCATGCATTGCCAGCTAA
Protein sequence (LotjaGi3g1v0050000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHRSLSTSFQARIISQLQVQNQVPKVVIQEPCDLFINHRSMDTKRTVATLIYDHLRRLGFHPFLDNKNMKPGDKLFDKIN AAIMECKVGLAVISPRYCESYFCLHELALLMECKKKVIPIFVDIKPSQLGVINNRNWTKEDLDRFKMALEEAKYTVGLIF NSSQGNFSDIVTSASDIIIKNLAEVEDEDMQYPCIAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 189 | 186 | 1.3E-88 | – | |
| PANTHER | 4 | 189 | 186 | 1.3E-88 | – | |
| Gene3D | 6 | 156 | 151 | 6.8E-30 | ||
| ProSiteProfiles | 30 | 145 | 116 | 13.423 | ||
| SMART | 31 | 159 | 129 | 1.1E-14 | ||
| SUPERFAMILY | 31 | 153 | 123 | 7.98E-25 | ||
| Pfam | 35 | 138 | 104 | 2.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi3g1v0050000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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