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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0053300 |
| Transcript ID | LotjaGi3g1v0053300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|Q1STP0|Q1STP0_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi3g1v0053300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5557040..5559880) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATTCTTCTCCTATATCAAGTTGAACCCATAACATACCATCCTTTTTGGCCCTTCCCCTGCCTTGGCATTCTATCAT CAACTTGCTTCATCCCATGAGAGAAATCAGAACATAAAACAAAATATTGTTTTACACACATTAGAGATAAAGCCATATGA GAAAAACTGGACCTAAAAGTAGAGGAATAGGGGGATGGAAGGATTGGATGAGTTCATAGAGAGGCTTTTAGAAGCAAGGA AGAACAGGAGCAAGCGAATTCATCTGGCGGAGTCAGAAATTCGCAACCTTTGCACCACCGCGAAAGATATCTTTCTCGGC CAGCCAGTCCTACTTGAATTGGAAGCTCCCATTAACATTTGTGGTATTTCCAATTTCCCTAACTCATACTATCAAACAAT GTATAATAATGTAATGTCTTCCTTTTCCCCCCTCTTGTGTAATAGTTAACATAGGCACTAAAAAAAGCGTTGGGTAAGGA ATCAAAATAAAAGGTTTCTATTGCCAATACATGCTTATTTGTTGAATCACTCTCCCTTAGAAGGTTGCGTATCAAAACTT ATTGTTAATGTAACGACTCTCATCTCTCTTGGTAAATGATCTATAAGAACCTACGGTTTCAAAGACATGTCTTGGCCCAT GGTGATTATCAGAGTCGATGGCCGAGGGAGGGGGCATGCTGATTGTGCATTAATTAAAAGGTTTCTATTGGCAACACATG CTTATTTGTTAAGAACAAATCACTTCCCCACAAAATATTGTGTGCTTGATTCTTGTTGTTAATGTAACGAATCGGTTGGT GAATAACTATAAGAACTTATGGTCCTAGAGACATGTCTTGGTCCATGGTGGTTATCAGAGCCGGTGGCTGAGGGAGGGGG CATGCTGCTGCCATGACCTCTCAAGCGTTTCAATTTTATTTTCTTACATGTGATACATATGTGTGTAAGCTCTAGAAACC ATTGTAGGCATGTCCTAACTGCACACTCAAACATTTTATAAAGAAAACGGTTTCTATTGCTTGCATGCATATGCATGTAA TGGACTAATGGTAGGTGATGAAATCATATGATTTTTATTTTTGTGGTGTTCTTCTTTAGGTGACATACACGGCCAATACC CTGACCTGTTACGAGTGTTTGAGTATGGTGGGTTCCCTCCAGCTTCCAATTACCTATTCCTTGGGGACTACGTAGACAGA GGAAAACAGAGCATAGAGACAATATGTCTCCTCCTCGCCTACAAAATCAAATACCCAGAAAACTTTTTCCTTCTTCGAGG GAACCATGAATGTGCCTCCATCAACAGAATCTATGGATTCTACGACGAGTGCAAGAGAAGGTTCAGTGTTCGTCTATGGA AGCTATTCACAGACTGCTTCAATTGTTTGCCGGTGGTTGCGGTGGTCGACGACAAGATCATCTGCATGCACGGTGGGCTT TCACCTGAAATGGAAAGCTTGGATCAGATAAAAGCTATTGAGAGGCCATTGGACGTGCCGGATCAAGGTCTCTTGTGTGA CATTCTTTGGTCTGATCCTGATGTGGAAATAAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCCTACACTTTTGGACCAG ATATCGTTGCTGAGTTCTTGAAGAAACATGATCTTGATCTTATATGTCGGGCTCATCAGGTTGGTCTTTCTCTAACAACA ATAAGACATACTGCATTTGAATACACTTTGAGATTGACAAAAAAAAAAATACACATACAACTTTCTTACCTTTTGTGGTG GCTGTCCATAGTGATTTGGTCTTCGCCATACTTTTGAGATCAAACATACACATAATCGAGAAGAAGAAGCATGAGTTTAA TAATTATATAAACATTGTGTAAATAAGTTCAACACAAATATCTTATTAGTCATCGTATATGCCGTGTTCATCAGGTTAGA AAGATCTTAATTATGTGCTTATTCATAAGCTAATTTGAGAAACTTATTGAAACAAGATTAAAATAGGTTATAGGTAAGTA TAAGTGTTTATTCATCTAACTTGAGTAGCTTATAAAAATAAGTTCAAAACAGTTTATAGACATGTATACGCACATGATTA CAATATTTGATTATATTTTATCATCTTGAATATGATTATAATCAGATGTGTTTTACTCACAATGCTGTCTTATTTCTTAC TAACATTCAGAACCATTTTCCCCCTCAAATATTCATTCATTCTTCAACATGTTGAATTCAACCATTGACATGGAACTTGT TCCTCAGGTTGTTGAAGATGGCTACCTATTCTTCGCAGACAGACAGCTAGTGACCATATTTTCAGCACCAAACTATTGTG GGGAGTTCAACAATGCAGGGGCACTAATGTGTGTGGATGAAACTTTACTCTGTTCATTTCAGATTATCAAACCCTTGAGA GGAAAAACCTGAATGGTTTTTGCAAGCAGAGAACACCGGGGCTGAAATTTTGCTCCAAACAATTAAGTTGTTTGATGAAG GTGTTGGAGCTCAAAGCTCTTTCCCCAAATTCAAAAACTTGTTCTTCACATTGTCTTAGAGTAGATTTCTTTCTAGAGAG AGGAGTTAAGTGAGAAATATTTGGCACCCACCTCCATTTTCTTCAGTTGTAAATTATCCATGTAATGAACCTGAGATTAG AAGAGGGTAGACATATAAGAGATCCATTAAAAAAGGCACAAAGTTTATGTATACTTTTACATCATTGTATAACAAGTAAA ATTGTACTGTACATATTCAACAGATTACACAATTCCTACTCTAATGCTCTCCTAAGACAGCTGCAACATCTCTTCCATGT ACATGAATTTGGTCTTGATAAAGTTTTCAGTTCAAAGATAG
CDS sequence (LotjaGi3g1v0053300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGATTGGATGAGTTCATAGAGAGGCTTTTAGAAGCAAGGAAGAACAGGAGCAAGCGAATTCATCTGGCGGAGTC AGAAATTCGCAACCTTTGCACCACCGCGAAAGATATCTTTCTCGGCCAGCCAGTCCTACTTGAATTGGAAGCTCCCATTA ACATTTGTGGTGACATACACGGCCAATACCCTGACCTGTTACGAGTGTTTGAGTATGGTGGGTTCCCTCCAGCTTCCAAT TACCTATTCCTTGGGGACTACGTAGACAGAGGAAAACAGAGCATAGAGACAATATGTCTCCTCCTCGCCTACAAAATCAA ATACCCAGAAAACTTTTTCCTTCTTCGAGGGAACCATGAATGTGCCTCCATCAACAGAATCTATGGATTCTACGACGAGT GCAAGAGAAGGTTCAGTGTTCGTCTATGGAAGCTATTCACAGACTGCTTCAATTGTTTGCCGGTGGTTGCGGTGGTCGAC GACAAGATCATCTGCATGCACGGTGGGCTTTCACCTGAAATGGAAAGCTTGGATCAGATAAAAGCTATTGAGAGGCCATT GGACGTGCCGGATCAAGGTCTCTTGTGTGACATTCTTTGGTCTGATCCTGATGTGGAAATAAAAGGGTGGGGTGAGAATG ATAGGGGTGTTTCCTACACTTTTGGACCAGATATCGTTGCTGAGTTCTTGAAGAAACATGATCTTGATCTTATATGTCGG GCTCATCAGGTTGTTGAAGATGGCTACCTATTCTTCGCAGACAGACAGCTAGTGACCATATTTTCAGCACCAAACTATTG TGGGGAGTTCAACAATGCAGGGGCACTAATGTGTGTGGATGAAACTTTACTCTGTTCATTTCAGATTATCAAACCCTTGA GAGGAAAAACCTGA
Protein sequence (LotjaGi3g1v0053300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLDEFIERLLEARKNRSKRIHLAESEIRNLCTTAKDIFLGQPVLLELEAPINICGDIHGQYPDLLRVFEYGGFPPASN YLFLGDYVDRGKQSIETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKLFTDCFNCLPVVAVVD DKIICMHGGLSPEMESLDQIKAIERPLDVPDQGLLCDILWSDPDVEIKGWGENDRGVSYTFGPDIVAEFLKKHDLDLICR AHQVVEDGYLFFADRQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQIIKPLRGKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 297 | 296 | 2.9E-133 | ||
| PANTHER | 3 | 296 | 294 | 2.4E-185 | – | |
| PANTHER | 3 | 296 | 294 | 2.4E-185 | – | |
| Pfam | 4 | 50 | 47 | 4.3E-17 | ||
| CDD | 4 | 292 | 289 | 0.0 | – | |
| SUPERFAMILY | 20 | 294 | 275 | 2.31E-118 | – | |
| SMART | 24 | 294 | 271 | 2.7E-162 | ||
| PRINTS | 52 | 79 | 28 | 3.4E-95 | ||
| Pfam | 53 | 243 | 191 | 7.9E-40 | ||
| PRINTS | 81 | 108 | 28 | 3.4E-95 | ||
| PRINTS | 114 | 138 | 25 | 3.4E-95 | ||
| ProSitePatterns | 115 | 120 | 6 | - | ||
| PRINTS | 148 | 174 | 27 | 3.4E-95 | ||
| PRINTS | 177 | 204 | 28 | 3.4E-95 | ||
| PRINTS | 234 | 254 | 21 | 3.4E-95 | ||
| PRINTS | 256 | 272 | 17 | 3.4E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi3g1v0053300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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