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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0054000 |
| Transcript ID | LotjaGi3g1v0054000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic; TrEMBL-Plants: tr|A0A1J7I064|A0A1J7I064_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5628839..5631889) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAAAAAACAAAAAAAAAGAAAAAAAGAAAAAGAAAAAGCCCCTGTTCAAATATTACAAGGATTGAATTGGAAGGTGT GAAAGTGGGAAATGCCAAACCTGAACCTATCTCTTCCATCTTCTCTCAACACACCACAAACCCATCATCATCTTCTTCAC AACCCTTCCTTATCATCATCAAATGCTCACAACTTCAACCACAGTTTCACCTTCCCACAGCTCCACAAAGCCATCAATGA ACTCACCACCACCCCTCACAACCCCACCTCCTCCCTTCTCCTCCTCAAAGCCTGCATCAGGTCCAGCAACTTCACCCTCG GAAAACTCCTCCACCGCAAGCTCACCGAGTCACAACTCAACCTCGACTCGCTCCTTCTCAACTCACTCATCAGCCTCTAC TCAAAATGCGGCGACATCACCACCGCGCGCTCCATTTTCCAAACCATGGGCAGCAAGCGAGACCTGGTTTCTTGGTGTTC CATGATGTCCTGTTTCGCCAACAACAGCATGGAACATGAAGCTCTTGTCACGTTTCTCGACATGCTCGAACATGGGTTTT ACCCGAATGAGTATTGCTTTACGGCGGCGTTGAGAGCTTGTTCGAATTCCCTGTATTTTTCTGTGGGGCGTGTTGTATTT GGGTCTGTGTTGAAGACTGGGTATTTTGATTCTCATGTTTCTGTTGGGTGTGAATTGATTGATATGTTTGTGAAGGGTTG CGGCGACATTGAATCTGCACATAGAGTGTTTGAGAAAATGCAGGAGAGAAATGTGGTTACTTGGAACTTGATGATGACTA GGTTTGCACAAATGGGTTACCCTGAGGATTCAATTGATTTGTTCTTCAGGATGTTGCTAAGTGGGTATACACCTGATAGG TTTACTCTAACTAGTGCGTTGACTGCTTGTGCTGAGTTGGAATTGTTATCAGTTGGGAAGCAATTGCATTCTTGGGTTAT CAGGTCTGGGTTGGCTTTGGATTTGTGTGTGGGTTGTAGTTTGGTGGACATGTATGCAAAATGTGCAGTGGACGGATCAT TAGTAGATTCTAGGAGGGTTTTTAATAGCATGCCAGAGCATAATGTCGTGTCTTGGACTGCACTCATCGCCGGATACGTG CGAGGTAGTGGACAAGAACAGGAAGCTATGAGATTGTTCTGTGACATGCTTCAGGGTAATGTTGCACCGAATGGTTTCAC ATTCTCCAGCGTCCTCAAGGCTTGTGCGAATCTCCCGGATTTCGGCTTTGGCGAACAACTTCACAGCCAAACTATCAAAC TAGGCCTTTCTGCTGTTAATTGTGTAGCGAATTCTCTTATTAACATGTATGCAAGATCTGGAAGATTGGAATGTGCTCGC AAATGTTTTGATCTATTGTTTGAGAAGAGTTTGGTTTCGTGTGAAACGATTGTTGATGTGATTGTGAGAGATTTGAATTC TGATGAAACCCTGAACCATGAAACTGAACACACCACTGGTATTGGAGCTTGTTCGTTTACTTATGCATGCCTCTTAAGTG GTGCTGCTTGTATCGGCACAATTGGTAAGGGTGAACAGATCCATGCCCTAGTAGTGAAGTCTGGGTTTGAGACCAACCTA TCCATTAATAATGCCCTGATCTCTATGTATTCCAAGTGTGGAAACAAGGAAGCTGCTTTACAGGTCTTCAATGACATGGG GGATCGCAATGTAATAACTTGGACCTCTATTATAAGTGGTTTTGCAAAACATGGATATGCTACAAAAGCATTAGAGTTAT TCTATGAAATGCTTGAAACAGGTGTAAAGCCTAATGATGTCACATATATTGCAGTTTTGTCAGCCTGTAGTCATGTTGGT TTGATCGATGAGGGATGGAAGCACTTCAATTCCATGCGTCATTGCCATGGCGTTGTTCCAAGGATGGAGCATTATGCATG TATGGTTGATGTACTTGGTCGGTCTGGATTGCTTTCAGAAGCCATTGAATTTATTAACTCAATGCCTCTCGACGCTGATG CAATGGTGTGGCGGTCATTACTCGGTTCTTGTCGAGTTCATGGTAACACCGAGCTAGGGGAGCATGCTGCAAAAATGATT CTTGAGCGGGAACCTCATGATCCAGCTACCTATATATTATTGTCAAACTTATATGCAACAGAAGAACGGTGGGATGATGT GGCAGCCATTAGAAAAACCATGAAACAGAAAAAGATAATAAAAGAAGCTGGTTATAGCTGGATTGAAGTTGAAAACCAGG TGCACAAATTCCATGTAGGGGATACATCACACCCTCAAGCTCAAAAAATATATGACGAACTCGATGAATTGGCTTCAAAA ATAAAGAAATTGGGTTATGTCCCAAATACAGATTTTGTTCTTCATGATGTGGAGGATGAACAGAAGGAACAATATCTATT TCAACACAGTGAGAAAATTGCAGTGGCATTTGCTCTTATTAGTATCCCCAACCCAAAACCGATAAGGATATTTAAGAATC TTCGGGTTTGTGGGGACTGCCATACAGCAATAAAGTATATATCGAAGGTCACCGGAAGAGTGATTGTGGTGAGAGATGCA AATCGGTTTCATCATATCAAGGATGGGACATGCTCTTGCAATGATTATTGGTAATCCATTGAAGTTTAGACTTCTAAGCC CCAGTTACTGTAAATTTTGATGAGCTATTTCCTTTTGCAAGAGTTAGATACATTCTTTCTGCTCAGACTACAAAGGTTGT GAAGGTGGAAACTGTTGAATATTGAAGCTCTATGCTGATCTATATGCCTTTGTTCTCTTGTATAGTTTTCCACGGAGGTT ATACCACTTATTGTGCTCGAGTAGCAATTTGAGTTGTACTATTTGTAAAGCCTAGAGAAAGAAAGTGTATGTATGTTAAT ATATATGTTTCATAAAAGTGATTCAGACTGGGCCTCAAATTTGTTTTTTCATTTTTCATTTATTTACATACTAAATTAAA TTTTCACTTATGCTCATTCTTATGGTGTTCTTTGGCTTTATCGGCACATTTCCCTTTCTCTAACAATTTCCAGTTACATT TTCGTGTATCA
CDS sequence (LotjaGi3g1v0054000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAACCTGAACCTATCTCTTCCATCTTCTCTCAACACACCACAAACCCATCATCATCTTCTTCACAACCCTTCCTT ATCATCATCAAATGCTCACAACTTCAACCACAGTTTCACCTTCCCACAGCTCCACAAAGCCATCAATGAACTCACCACCA CCCCTCACAACCCCACCTCCTCCCTTCTCCTCCTCAAAGCCTGCATCAGGTCCAGCAACTTCACCCTCGGAAAACTCCTC CACCGCAAGCTCACCGAGTCACAACTCAACCTCGACTCGCTCCTTCTCAACTCACTCATCAGCCTCTACTCAAAATGCGG CGACATCACCACCGCGCGCTCCATTTTCCAAACCATGGGCAGCAAGCGAGACCTGGTTTCTTGGTGTTCCATGATGTCCT GTTTCGCCAACAACAGCATGGAACATGAAGCTCTTGTCACGTTTCTCGACATGCTCGAACATGGGTTTTACCCGAATGAG TATTGCTTTACGGCGGCGTTGAGAGCTTGTTCGAATTCCCTGTATTTTTCTGTGGGGCGTGTTGTATTTGGGTCTGTGTT GAAGACTGGGTATTTTGATTCTCATGTTTCTGTTGGGTGTGAATTGATTGATATGTTTGTGAAGGGTTGCGGCGACATTG AATCTGCACATAGAGTGTTTGAGAAAATGCAGGAGAGAAATGTGGTTACTTGGAACTTGATGATGACTAGGTTTGCACAA ATGGGTTACCCTGAGGATTCAATTGATTTGTTCTTCAGGATGTTGCTAAGTGGGTATACACCTGATAGGTTTACTCTAAC TAGTGCGTTGACTGCTTGTGCTGAGTTGGAATTGTTATCAGTTGGGAAGCAATTGCATTCTTGGGTTATCAGGTCTGGGT TGGCTTTGGATTTGTGTGTGGGTTGTAGTTTGGTGGACATGTATGCAAAATGTGCAGTGGACGGATCATTAGTAGATTCT AGGAGGGTTTTTAATAGCATGCCAGAGCATAATGTCGTGTCTTGGACTGCACTCATCGCCGGATACGTGCGAGGTAGTGG ACAAGAACAGGAAGCTATGAGATTGTTCTGTGACATGCTTCAGGGTAATGTTGCACCGAATGGTTTCACATTCTCCAGCG TCCTCAAGGCTTGTGCGAATCTCCCGGATTTCGGCTTTGGCGAACAACTTCACAGCCAAACTATCAAACTAGGCCTTTCT GCTGTTAATTGTGTAGCGAATTCTCTTATTAACATGTATGCAAGATCTGGAAGATTGGAATGTGCTCGCAAATGTTTTGA TCTATTGTTTGAGAAGAGTTTGGTTTCGTGTGAAACGATTGTTGATGTGATTGTGAGAGATTTGAATTCTGATGAAACCC TGAACCATGAAACTGAACACACCACTGGTATTGGAGCTTGTTCGTTTACTTATGCATGCCTCTTAAGTGGTGCTGCTTGT ATCGGCACAATTGGTAAGGGTGAACAGATCCATGCCCTAGTAGTGAAGTCTGGGTTTGAGACCAACCTATCCATTAATAA TGCCCTGATCTCTATGTATTCCAAGTGTGGAAACAAGGAAGCTGCTTTACAGGTCTTCAATGACATGGGGGATCGCAATG TAATAACTTGGACCTCTATTATAAGTGGTTTTGCAAAACATGGATATGCTACAAAAGCATTAGAGTTATTCTATGAAATG CTTGAAACAGGTGTAAAGCCTAATGATGTCACATATATTGCAGTTTTGTCAGCCTGTAGTCATGTTGGTTTGATCGATGA GGGATGGAAGCACTTCAATTCCATGCGTCATTGCCATGGCGTTGTTCCAAGGATGGAGCATTATGCATGTATGGTTGATG TACTTGGTCGGTCTGGATTGCTTTCAGAAGCCATTGAATTTATTAACTCAATGCCTCTCGACGCTGATGCAATGGTGTGG CGGTCATTACTCGGTTCTTGTCGAGTTCATGGTAACACCGAGCTAGGGGAGCATGCTGCAAAAATGATTCTTGAGCGGGA ACCTCATGATCCAGCTACCTATATATTATTGTCAAACTTATATGCAACAGAAGAACGGTGGGATGATGTGGCAGCCATTA GAAAAACCATGAAACAGAAAAAGATAATAAAAGAAGCTGGTTATAGCTGGATTGAAGTTGAAAACCAGGTGCACAAATTC CATGTAGGGGATACATCACACCCTCAAGCTCAAAAAATATATGACGAACTCGATGAATTGGCTTCAAAAATAAAGAAATT GGGTTATGTCCCAAATACAGATTTTGTTCTTCATGATGTGGAGGATGAACAGAAGGAACAATATCTATTTCAACACAGTG AGAAAATTGCAGTGGCATTTGCTCTTATTAGTATCCCCAACCCAAAACCGATAAGGATATTTAAGAATCTTCGGGTTTGT GGGGACTGCCATACAGCAATAAAGTATATATCGAAGGTCACCGGAAGAGTGATTGTGGTGAGAGATGCAAATCGGTTTCA TCATATCAAGGATGGGACATGCTCTTGCAATGATTATTGGTAA
Protein sequence (LotjaGi3g1v0054000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNLNLSLPSSLNTPQTHHHLLHNPSLSSSNAHNFNHSFTFPQLHKAINELTTTPHNPTSSLLLLKACIRSSNFTLGKLL HRKLTESQLNLDSLLLNSLISLYSKCGDITTARSIFQTMGSKRDLVSWCSMMSCFANNSMEHEALVTFLDMLEHGFYPNE YCFTAALRACSNSLYFSVGRVVFGSVLKTGYFDSHVSVGCELIDMFVKGCGDIESAHRVFEKMQERNVVTWNLMMTRFAQ MGYPEDSIDLFFRMLLSGYTPDRFTLTSALTACAELELLSVGKQLHSWVIRSGLALDLCVGCSLVDMYAKCAVDGSLVDS RRVFNSMPEHNVVSWTALIAGYVRGSGQEQEAMRLFCDMLQGNVAPNGFTFSSVLKACANLPDFGFGEQLHSQTIKLGLS AVNCVANSLINMYARSGRLECARKCFDLLFEKSLVSCETIVDVIVRDLNSDETLNHETEHTTGIGACSFTYACLLSGAAC IGTIGKGEQIHALVVKSGFETNLSINNALISMYSKCGNKEAALQVFNDMGDRNVITWTSIISGFAKHGYATKALELFYEM LETGVKPNDVTYIAVLSACSHVGLIDEGWKHFNSMRHCHGVVPRMEHYACMVDVLGRSGLLSEAIEFINSMPLDADAMVW RSLLGSCRVHGNTELGEHAAKMILEREPHDPATYILLSNLYATEERWDDVAAIRKTMKQKKIIKEAGYSWIEVENQVHKF HVGDTSHPQAQKIYDELDELASKIKKLGYVPNTDFVLHDVEDEQKEQYLFQHSEKIAVAFALISIPNPKPIRIFKNLRVC GDCHTAIKYISKVTGRVIVVRDANRFHHIKDGTCSCNDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Gene3D | 30 | 176 | 147 | 1.7E-20 | ||
| ProSiteProfiles | 57 | 91 | 35 | 5.382 | ||
| PANTHER | 60 | 185 | 126 | 5.2E-131 | – | |
| ProSiteProfiles | 92 | 122 | 31 | 8.309 | ||
| Pfam | 97 | 122 | 26 | 0.0083 | ||
| ProSiteProfiles | 124 | 158 | 35 | 10.073 | ||
| Pfam | 126 | 156 | 31 | 0.0011 | ||
| TIGRFAM | 126 | 160 | 35 | 3.0E-6 | ||
| ProSiteProfiles | 159 | 193 | 35 | 5.097 | ||
| Gene3D | 177 | 281 | 105 | 4.6E-17 | ||
| PANTHER | 195 | 284 | 90 | 5.2E-131 | – | |
| ProSiteProfiles | 195 | 226 | 32 | 6.96 | ||
| Pfam | 226 | 274 | 49 | 2.9E-7 | ||
| ProSiteProfiles | 227 | 261 | 35 | 11.082 | ||
| TIGRFAM | 229 | 262 | 34 | 1.3E-4 | ||
| ProSiteProfiles | 262 | 296 | 35 | 6.314 | ||
| PANTHER | 281 | 380 | 100 | 5.2E-131 | – | |
| Gene3D | 283 | 462 | 180 | 1.7E-25 | ||
| ProSiteProfiles | 331 | 366 | 36 | 11.356 | ||
| Pfam | 331 | 380 | 50 | 2.0E-12 | ||
| ProSiteProfiles | 367 | 401 | 35 | 7.015 | ||
| ProSiteProfiles | 402 | 436 | 35 | 7.366 | ||
| Pfam | 407 | 432 | 26 | 0.0067 | ||
| TIGRFAM | 407 | 433 | 27 | 0.0032 | ||
| Gene3D | 465 | 578 | 114 | 1.5E-26 | ||
| ProSiteProfiles | 467 | 501 | 35 | 6.423 | ||
| PANTHER | 470 | 698 | 229 | 5.2E-131 | – | |
| ProSiteProfiles | 502 | 532 | 31 | 8.528 | ||
| TIGRFAM | 507 | 533 | 27 | 0.002 | ||
| Pfam | 533 | 580 | 48 | 8.9E-13 | ||
| ProSiteProfiles | 533 | 567 | 35 | 12.945 | ||
| TIGRFAM | 535 | 568 | 34 | 9.7E-9 | ||
| ProSiteProfiles | 568 | 603 | 36 | 7.98 | ||
| Gene3D | 579 | 708 | 130 | 1.7E-14 | ||
| ProSiteProfiles | 604 | 634 | 31 | 6.489 | ||
| Pfam | 608 | 631 | 24 | 0.1 | ||
| ProSiteProfiles | 636 | 666 | 31 | 5.064 | ||
| ProSiteProfiles | 670 | 704 | 35 | 7.443 | ||
| Pfam | 707 | 830 | 124 | 3.6E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0054000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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