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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0056700 |
| Transcript ID | LotjaGi3g1v0056700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 Ubiquitin ligase family protein; TAIR: AT2G44410.1 RING/U-box superfamily protein; Swiss-Prot: sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2; TrEMBL-Plants: tr|A0A072UIE9|A0A072UIE9_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi3g1v0056700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5914168..5916555) extracted from Lotus japonicus Gifu genome v1.2.
GGTGCATTGTATTCTTCCATTCCATGACAATGCTCATGTTGTCTGTGTGTCTGTGAATGCCGCTTTGGAATCATACACAT TGATCGGAACCCTCATCATCATCATCATCATCATCATCATCATCATCATCATCGCCGATTCCCCAAATTCATCTTCATGC AATGGTAATTCTTCACCCCTTTTCAATCAATTTCACTTTTTTCTCCTTTCTTTGCTGAATCTGTTGATTCTACTTTCATC ATTATTGAAGAACCACTGCAATTCAAGTTGTGGGTATGAGAATTAGGTATTTAACTAGTTTGAACAAAGCTGGAACAATT CAAACCCAGTTCAATTATCAACTTTTGTTCATGTTCTTGTATTTATTTATTTATTGGTGTTTGAATCCATTTGCATTTAG CTGTAATTTTTTTCTTTGAATTTGGATTAGGATCTTGATGGTTATGAAATATGTTGTTAATAATGGCATAAAGTTTATTT TTTTCTTCAAGATTGTGTATAATGGAGCTTGATTTGAACCAGGAGCCTTTGGACCCAACTTACACTTCAGGTGTTGAATT GGGTTCTTCTACAGAATCTGCCCATGTTCATATAGAGGACCATTTTAGACACCTGGAAGCAGTAACTTCCAGAGCTAGGC AGCGCCTGAGGTTGACGCCGGTTCACTCTCCGATTCAGATAACAAACTTTTCAGGAGAAGCCACCACAATAGCTGATGTT CCTGGCGAAGCGAGGGAGCGCAGGGAGGTTGAGGAAAAAGTTGTTGAAAGTGGGAGAGGGGTGAAAAGGAGTGGTGCGGA TTTAATAGCGAAAGCTTTGGGGCTGGAAGAACCAGGTGCGAGTAAGGGAGGGAGCAGCACTGGAAACTTTTTTGATTGTA ATATATGCTTGGAAATGGCTAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGCCTTGCTTCTATAAGTTG TCTTATGCTTACTCAAATGCAAGGGAATGCCCTGTTTGTAATGGAGAGGTTACTGAAGCAGATCTTGTTCCTATTTATGG AAAATCAAGTTCCAGTGGCGATCATCGGTTGGAATTGGAAGAAGCTGGTTTGAGCATTCCTCCTCGACCCATGGCACAAA GAGTTGATGGTATTAGGCAGCAGCTGGTAAGGCAAGGAGCATCTTCCTCTATAGTCCGTCACATCTTGCAGTTTCATAAC CTTTTTGGTGGAGAGCGAGTTCAGTCAGAAAGCCCCAATACCGCAGCAACCGATAGAAATAATGTTTCGCGCATTCAATC TCAACCGCAGACAGACAATAATCAACATCCTGATTCTAATCCGATTTCAAGGTTGTTAGTGCAAAGAGCTGCTTCATTTT CATCCATTTCATCAAGATTAAATTCTGCAATGGATTCTGCAGAAAGACTCGTTCAGGACCTTGAATCATATATCCATCGC GACCATACAGGAGAAAGCAGGCAGTTAAATCCTCCTGATGCTGATAGAAATCCAACTTTTAGTGCTACTGCTACAAACCG GTCAGAGAGTCTGACTCAAGATGTTGCTGCAGCCAATTCTGCAACTGCAACTTCTGTGTCTCCTATAAGCAGTAATGTTG ACACAGTTGCTGTTATAGACTCAGGAATTCAGACAACAGATGATAATGTACAGATTAGGCCCTTAGACCCTTCTACATCT TCATGGAGAACTGATGTTCCAAGAGAGCGCCGAAGAAGATTGCGATGATGGGGATTTGGAATACACTCACTAAAGGTTTC TGGCTTATATGCATACTACAAGTTACTCTTCATACAAAAACTCAGCTTCTTTGATAAAACAAATATATTTTCTTAGCTAT GTATAAAGTGCCAATTTTTCATTCAACAGATATGCGGATGTTTAGCACATCACCAATGTCTTCTTTTGTTCACTATTTGT AATAGGCTCAGGCAGATATCTTTCTCTTCTATTAGGGATCTTATATGAATGATCATTATGTTTGCAGCAGCATGGTGTGA CATTTCTATAACTACAGAGCTAGTAATCAATGTGCCTGCATATATTCTTATATGTTCATAATAGATTGATCTTAGTCTTC TGAATATTAGATTGCGCCATTGGTTAGCCTTCACCTAGAGCTTTCTTTCTCCTTAATTCTAATTTGTGGCATCATGGCTT GATTTGGATAAGGGCCTCTAATATTCTAGCTTATGTACACCAGTTTGCTGTCTTTGACCTTTACTAAGTGGATTGCAAGC AATCTGTTAGTATTATTGGCACTTTGTCTATTATAATCATTTCTTGCAGAATTGCTTGGCTGTAGTCATGATTTTTCACT CATGCTATCAGCTATGTTTGTCTCCTCAAACGTTAATTTTTCTTTAATCAGCGCCTAACAGAGTCATG
CDS sequence (LotjaGi3g1v0056700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCTTTGGACCCAACTTACACTTCAGGTGTTGAATTGGGTTCTTCTACAGAATCTGCCCATGTTCATATAGAGGA CCATTTTAGACACCTGGAAGCAGTAACTTCCAGAGCTAGGCAGCGCCTGAGGTTGACGCCGGTTCACTCTCCGATTCAGA TAACAAACTTTTCAGGAGAAGCCACCACAATAGCTGATGTTCCTGGCGAAGCGAGGGAGCGCAGGGAGGTTGAGGAAAAA GTTGTTGAAAGTGGGAGAGGGGTGAAAAGGAGTGGTGCGGATTTAATAGCGAAAGCTTTGGGGCTGGAAGAACCAGGTGC GAGTAAGGGAGGGAGCAGCACTGGAAACTTTTTTGATTGTAATATATGCTTGGAAATGGCTAGAGATCCTGTTTTGACAT GCTGTGGTCACTTGTTTTGTTGGCCTTGCTTCTATAAGTTGTCTTATGCTTACTCAAATGCAAGGGAATGCCCTGTTTGT AATGGAGAGGTTACTGAAGCAGATCTTGTTCCTATTTATGGAAAATCAAGTTCCAGTGGCGATCATCGGTTGGAATTGGA AGAAGCTGGTTTGAGCATTCCTCCTCGACCCATGGCACAAAGAGTTGATGGTATTAGGCAGCAGCTGGTAAGGCAAGGAG CATCTTCCTCTATAGTCCGTCACATCTTGCAGTTTCATAACCTTTTTGGTGGAGAGCGAGTTCAGTCAGAAAGCCCCAAT ACCGCAGCAACCGATAGAAATAATGTTTCGCGCATTCAATCTCAACCGCAGACAGACAATAATCAACATCCTGATTCTAA TCCGATTTCAAGGTTGTTAGTGCAAAGAGCTGCTTCATTTTCATCCATTTCATCAAGATTAAATTCTGCAATGGATTCTG CAGAAAGACTCGTTCAGGACCTTGAATCATATATCCATCGCGACCATACAGGAGAAAGCAGGCAGTTAAATCCTCCTGAT GCTGATAGAAATCCAACTTTTAGTGCTACTGCTACAAACCGGTCAGAGAGTCTGACTCAAGATGTTGCTGCAGCCAATTC TGCAACTGCAACTTCTGTGTCTCCTATAAGCAGTAATGTTGACACAGTTGCTGTTATAGACTCAGGAATTCAGACAACAG ATGATAATGTACAGATTAGGCCCTTAGACCCTTCTACATCTTCATGGAGAACTGATGTTCCAAGAGAGCGCCGAAGAAGA TTGCGATGA
Protein sequence (LotjaGi3g1v0056700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPLDPTYTSGVELGSSTESAHVHIEDHFRHLEAVTSRARQRLRLTPVHSPIQITNFSGEATTIADVPGEARERREVEEK VVESGRGVKRSGADLIAKALGLEEPGASKGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVC NGEVTEADLVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNLFGGERVQSESPN TAATDRNNVSRIQSQPQTDNNQHPDSNPISRLLVQRAASFSSISSRLNSAMDSAERLVQDLESYIHRDHTGESRQLNPPD ADRNPTFSATATNRSESLTQDVAAANSATATSVSPISSNVDTVAVIDSGIQTTDDNVQIRPLDPSTSSWRTDVPRERRRR LR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 353 | 339 | 1.4E-59 | – | |
| PANTHER | 15 | 353 | 339 | 1.4E-59 | – | |
| Gene3D | 107 | 208 | 102 | 2.9E-15 | ||
| SUPERFAMILY | 116 | 173 | 58 | 3.53E-15 | – | |
| CDD | 118 | 162 | 45 | 9.63895E-24 | – | |
| Pfam | 119 | 166 | 48 | 1.3E-8 | – | |
| ProSiteProfiles | 120 | 161 | 42 | 12.666 | ||
| SMART | 120 | 160 | 41 | 1.6E-8 | ||
| MobiDBLite | 308 | 334 | 27 | - | – | |
| MobiDBLite | 317 | 334 | 18 | - | – | |
| MobiDBLite | 376 | 402 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0056700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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