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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0058800 |
Transcript ID | LotjaGi3g1v0058800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras-related protein Rab-25; TAIR: AT5G47960.1 RAB GTPase homolog A4C; Swiss-Prot: sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c; TrEMBL-Plants: tr|I3T0J2|I3T0J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6183536..6187911) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAAAATAAAAACTAAAACTTAAATTAAAAAACTGAAAGCTAAAAAAAATCCCAAAATCTATGACAGGTTTCACCTGA GTATTTGGTATATTAGCTGCCTGTCTGTAATCAAATATTTCGTTCTCAGTTACTACTTGTCTCTGTGTCTGAAAATTGCT TTCCAAGTTCCTCTCTGTAAATTCCTTTTTCCTCTTTCAGAAAACAACGCTTTCAATGGCCAACATTGTGAATTAATAGC GAAGCAGCGTAACCCAAACGTGAAAAGGAAGCACATTTACACACCAAATGCCACTCCAACAACTACCCCTTTTTCCCTCT CACAAGAAACGAACCCAAAATGCGTGTGCAAACCGAAACTGACAGGGAAAAAGACCACATTTTTATGCAGCAAAAGTGAG GATCCAAGGTGGGGTTTGCTTCTTTGTGTTGAGTTTTCAAAAGGGTTGTTGAAAACCAAAGAGTTAGAATGGCTCAATGG CAGGGTGATTCGGATGAGGGTATCGACTATATGTTCAAGGTTGTCATGGTTGGAGACTCTGGGGTTGGGAAATCTCAGCT TTTGAATAGGTTTGTGAGGAATGAGTTCCAAATGAAATCCAAAGCCACAATTGGGGTTGAATTTCTGACCAAGACTGTTG TCATGGATCACAAGGTAGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTCTAAACTTTTTCTCCTATGTAAT TATTTTTTTCCATATAAATAGTTTTTCATTGGATTTGCTTGTGTCACAGTCACAGCCTAATTATGTTGAGCTTAAATGAT CATTTGTCAGTGTATAATAATAATTTAGATATAAGCATACATGTAAGATCTAAGAAGCTAGGGTCTGAATCATGTGATCT TTTAACAAACAAAACCTAACATAGTTTTTTTTAACTATAATTAGACCGAAAGATGCAAGTAGCGAATCATGGTCCTTTAG CTACATAATCATCAAAATGTCTTGTTCTCTTTAAACTTAGCTTTAAGGTATGATGTTAGAGTGAAGATGCTAGACTCTAG TTTCCTCAGGTGTTTAATAGGCTTAAGGTTGTCTCTTGAGTTATTGACTTTTTTATATTTATTATGTGATTCATTAGGCA ATTAAATGATATTATGATTGACTAATTTATTTAGGGGTTATGGAAGGTTATGGTTTTCTTGACTCATGGATTTCTGCTCG CATAGCTCGGTTATGTTGTTCCCATGAGATAGATGGTATTAGTTCTGTAACCCCTCCCTTAGGCCGAGCTGTCATGACTC GGCTATAGTACTTACGTAAAGGGGGCATTATTAGTTATGCAACATTGACCTTCCTTTCGGCTGGGCTATCATGTTGATAG CTGGGTATGTACATGTTTAGAAGTATATGGTTTCATTTCATGTTTGTCAGATGTCACTTTATGCTACAAAAAAATAGGGT GAGTTTATGATGAATTTTAACTAGTTTGCCAGTTTCCGTGATACTGTGTTTTACTAGTCAAGTCATAAGTGTGGATGTTG CTGATTTGGTTCCCAAATGTGTCCTTCAAATGCATGTTGATTTCATCTTCCTGTGACAATGTTGGCATCATTGCAGGTAC CAGGCAATTACAACTGCATATTACAGAGGTGCAACTGGCGCGTTACTAGCATATGACATAACCAATCGCCAATCCTTTGA TCATGTTGAGAAGTGGCTCGATGAGCTGCGTGTACATGCAGATAATATAATTGTCATGCTTGTTGGCAACAAGTCTGACC TTAGTTCTGGTCGAGCAGTGCCTATGGAGGAAGCCAAAGACTTCGCCAAACAAAAGGGCCTCTTCTTCGTCGAGACATCA GCACTTGACTCCAACAATGTGGAATCTGCTTTCCTGGGTCTCCTCTCTCAAATATATGCAACAGTCGGTAAGAAGCACAT CATTGCAGAGGGAGCTGAGTTGAATTGGGATAAAGTAAACCTTGAACTTGAAGGAATAAAAATTAAGGTCTCATCACAAG AAGCTGAATGCCAAAAAGCTAAAAGGAGATTCAACTGTTGCAGTGTTTTTTAATCTTTCCTTTCACCCGAAGCTACCTGG ATCTTAGGTAAGGACTATTTTTCTCCCTCCCCTGCTTGTAATTCTATATATACTCTGCCAACCATTTTTTTCTTTTTCGC TGTTCTTTACCTTTCAAGAGATAGTTGTTAGGCATGGTTTTGCCTTTAGAATTACTGTTATACTGATTGCTTTGATATGA AGTCAGCTACCAAGTACCAACTCAAAAATGATATGATGAATTTGAGTATCCTATTCCATTATGCTTTCAGTTATACGTAA TAGGGAAACCACATTGCTTGATCATGATCAAACAATTAAACATGCTCAGCTAGATAGGCAATTCATTTCTAGTACTGAAT TAAGTTGGATCATCTGTAGAAAGTTTTTTATAATTGTATTTCTCCGGTAGCATTTCCTTGTCACAGGTTTTATCCCTTTT TTCATGTGCTGTGTTTATTTACATATCTGTTATTATTCTAGATTGATGTAAATTCTTGACATCATCAGTATGATATTAAC TTTCATCTATGGCTTACTTTAATTTTGGTTTTTTTCTTTTGGGAGGGGGGGTGGTGGATTGCATCAACTTCATTGCTATC TTTCTTTATGCAATATATCCATGAAGCTCATAATTTATGGATTCACCAGGCAAATCTTCTATCCTCCAACCAACCAGATG CAATCATGGGAGGGGGTTGCAGAAGATGAAGCTGCTTATGAATTTGTGAGACTCAAACAAGATGACCTTCTTCGTCAATT AGATTTGATAAATGTATATATTCCTCCCCGGTAGATTAATAGATTTCATCCCTCTGAAATTAACTATCATGTATGAGTTT TGGCAGATTTCATTTTACTGGCCGTCTGTGGCCTGGTTTTCATTGATAAATTTGACATATAATTGTAATCACAGACATTT ACTCAGTATTCAACATTAGATTTATCCATTATATTTCTCATGATAAACTCTTCTCTTCTGTGACATTTCTGTAAGAAAAT ACACATCCAACTGCGATCTGAGCCCGCAGAAAGAGATCAAATCAATTTACCAAAAGCACTCACTTACAGACACACACACA CACTTGCATAAAATATTTGTAGATTCACCCTGCCTTCTCTAACAAAACCTAATTATGTAATCTGCTCCATGGCAAGTGAA AGTGCTGGTTGCATCATCATAGGCATAGCTATAAGCCTGAGGACAAGAAGCCTTGAACACCTTTGAATAACTTGTTGGTT GGCACTTCTTAGGGCTATTGAAGTCTTTGGTACAACAATATTCTGGCTTGTTGAAAGCCATACATGCACTCTTACAACCA ACAATGTAACCTTTGTTTCTCACCTCCAATCCGCCGGGGCAGTTTTGATTCAAATCTGAACGACATTTCACTGCCTTACA CCGCCCATATCCCCTAGAGGGAATGATTGACACTGGCATGTTGTAACCATCAACAAGGCTAACATCATAAAAATCACCCT CCGGGCTGTCCAGTGTAAACTCCGCCAGTGAAGCTGGCGGTGTGCCTCCAGTTCCAGCACATTTAAGCTTGCCCCCACAG TCTCCTGTGATGCAGTTTCCGCTGCCAGAGCTGTCAAAGGTGCATCCGTGCCGCCCCCAGAAGCGGCCAGACCACCCTTC TGGTGCAGTGATGTTTATCGCATGGCCAGGTCTTAGGTGAACCCCATCATCAATGAGTTGAGGTCTTCCTGGTGCTGTTA GAATCCCAGGCCATATTGTGTTCCTGCATCTATTTTGCAGAGTAAAAAATCTTGCATCCACTCCTGAAAATACAAGAAAA TCCCAAATGAGATACATTGTTATCAAATTTTATAACTGCTAAAAAAGTTCAAAATTAAATAAAAATGGATTATTGAAGAA AGAGAACTAGTGATTGATTACCATTACCTAAGAATGATAGGAGCATGAGAAGAAGGGAAAGCTGTTTCAATGCCATGAGA GGTTTTATCACAGATTACGACTTGCATGAACTTGGTGATGCTTATAAGCAAGGGAAGGGAAGTTAGGACTAAGGAGGTTC AACAAACACAAGCTTATAAAATGGGAAACAAGCTGGAGTTTGCTTGATATCAGGACAACTGTAACTTTAAATATTGAAAG AATCAACATATTACCGAAATTCTTTTTTTCAGATACTAAAATTGCCCGAAATTTTCTTAACTCAAATCAAAGGATAGAGA CTAAGTCATCTCTAGCTTTTGAAACCAAGACAAAAAGTATATTCACGTTTACCTAACTTGTGAACCTTCAAACACATTCA TACCATAATTCTTTTCCTTTTTAACTTGAATAACAGCATTCATTGATTTCTCTGTT
CDS sequence (LotjaGi3g1v0058800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCAATGGCAGGGTGATTCGGATGAGGGTATCGACTATATGTTCAAGGTTGTCATGGTTGGAGACTCTGGGGTTGG GAAATCTCAGCTTTTGAATAGGTTTGTGAGGAATGAGTTCCAAATGAAATCCAAAGCCACAATTGGGGTTGAATTTCTGA CCAAGACTGTTGTCATGGATCACAAGGTAGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTACCAGGCAATT ACAACTGCATATTACAGAGGTGCAACTGGCGCGTTACTAGCATATGACATAACCAATCGCCAATCCTTTGATCATGTTGA GAAGTGGCTCGATGAGCTGCGTGTACATGCAGATAATATAATTGTCATGCTTGTTGGCAACAAGTCTGACCTTAGTTCTG GTCGAGCAGTGCCTATGGAGGAAGCCAAAGACTTCGCCAAACAAAAGGGCCTCTTCTTCGTCGAGACATCAGCACTTGAC TCCAACAATGTGGAATCTGCTTTCCTGGGTCTCCTCTCTCAAATATATGCAACAGTCGGTAAGAAGCACATCATTGCAGA GGGAGCTGAGTTGAATTGGGATAAAGTAAACCTTGAACTTGAAGGAATAAAAATTAAGGTCTCATCACAAGAAGCTGAAT GCCAAAAAGCTAAAAGGAGATTCAACTGTTGCAGTGTTTTTTAA
Protein sequence (LotjaGi3g1v0058800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQWQGDSDEGIDYMFKVVMVGDSGVGKSQLLNRFVRNEFQMKSKATIGVEFLTKTVVMDHKVVKAQIWDTAGQERYQAI TTAYYRGATGALLAYDITNRQSFDHVEKWLDELRVHADNIIVMLVGNKSDLSSGRAVPMEEAKDFAKQKGLFFVETSALD SNNVESAFLGLLSQIYATVGKKHIIAEGAELNWDKVNLELEGIKIKVSSQEAECQKAKRRFNCCSVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 10 | 194 | 185 | 8.1E-97 | – | |
PANTHER | 10 | 194 | 185 | 8.1E-97 | – | |
ProSiteProfiles | 11 | 224 | 214 | 33.956 | – | |
Gene3D | 13 | 196 | 184 | 4.6E-66 | – | |
SUPERFAMILY | 13 | 181 | 169 | 2.15E-58 | ||
CDD | 13 | 176 | 164 | 1.46794E-108 | – | |
TIGRFAM | 14 | 168 | 155 | 4.2E-35 | ||
PRINTS | 16 | 37 | 22 | 5.6E-40 | – | |
SMART | 16 | 178 | 163 | 1.1E-29 | – | |
SMART | 16 | 178 | 163 | 3.5E-99 | – | |
Pfam | 17 | 176 | 160 | 2.0E-61 | ||
SMART | 18 | 174 | 157 | 7.2E-12 | – | |
SMART | 21 | 221 | 201 | 1.1E-10 | – | |
PRINTS | 39 | 55 | 17 | 5.6E-40 | – | |
PRINTS | 57 | 79 | 23 | 5.6E-40 | – | |
PRINTS | 118 | 131 | 14 | 5.6E-40 | – | |
PRINTS | 153 | 175 | 23 | 5.6E-40 | – | |
Coils | 200 | 220 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0058800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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