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LotjaGi3g1v0058800.2

Overview

Field Value
Gene ID LotjaGi3g1v0058800
Transcript ID LotjaGi3g1v0058800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ras-related protein Rab-25; TAIR: AT5G47960.1 RAB GTPase homolog A4C; Swiss-Prot: sp|Q9FE79|RAA4C_ARATH Ras-related protein RABA4c; TrEMBL-Plants: tr|I3T0J2|I3T0J2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6185859..6187443) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTCAATGGCAGGGTGATTCGGATGAGGGTATCGACTATATGTTCAAGGTTGTCATGGTTGGAGACTCTGGGGTTGG GAAATCTCAGCTTTTGAATAGGTTTGTGAGGAATGAGTTCCAAATGAAATCCAAAGCCACAATTGGGGTTGAATTTCTGA CCAAGACTGTTGTCATGGATCACAAGGTAGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTCTAAACTTTTT CTCCTATGTAATTATTTTTTTCCATATAAATAGTTTTTCATTGGATTTGCTTGTGTCACAGTCACAGCCTAATTATGTTG AGCTTAAATGATCATTTGTCAGTGTATAATAATAATTTAGATATAAGCATACATGTAAGATCTAAGAAGCTAGGGTCTGA ATCATGTGATCTTTTAACAAACAAAACCTAACATAGTTTTTTTTAACTATAATTAGACCGAAAGATGCAAGTAGCGAATC ATGGTCCTTTAGCTACATAATCATCAAAATGTCTTGTTCTCTTTAAACTTAGCTTTAAGGTATGATGTTAGAGTGAAGAT GCTAGACTCTAGTTTCCTCAGGTGTTTAATAGGCTTAAGGTTGTCTCTTGAGTTATTGACTTTTTTATATTTATTATGTG ATTCATTAGGCAATTAAATGATATTATGATTGACTAATTTATTTAGGGGTTATGGAAGGTTATGGTTTTCTTGACTCATG GATTTCTGCTCGCATAGCTCGGTTATGTTGTTCCCATGAGATAGATGGTATTAGTTCTGTAACCCCTCCCTTAGGCCGAG CTGTCATGACTCGGCTATAGTACTTACGTAAAGGGGGCATTATTAGTTATGCAACATTGACCTTCCTTTCGGCTGGGCTA TCATGTTGATAGCTGGGTATGTACATGTTTAGAAGTATATGGTTTCATTTCATGTTTGTCAGATGTCACTTTATGCTACA AAAAAATAGGGTGAGTTTATGATGAATTTTAACTAGTTTGCCAGTTTCCGTGATACTGTGTTTTACTAGTCAAGTCATAA GTGTGGATGTTGCTGATTTGGTTCCCAAATGTGTCCTTCAAATGCATGTTGATTTCATCTTCCTGTGACAATGTTGGCAT CATTGCAGGTACCAGGCAATTACAACTGCATATTACAGAGGTGCAACTGGCGCGTTACTAGCATATGACATAACCAATCG CCAATCCTTTGATCATGTTGAGAAGTGGCTCGATGAGCTGCGTGTACATGCAGATAATATAATTGTCATGCTTGTTGGCA ACAAGTCTGACCTTAGTTCTGGTCGAGCAGTGCCTATGGAGGAAGCCAAAGACTTCGCCAAACAAAAGGGCCTCTTCTTC GTCGAGACATCAGCACTTGACTCCAACAATGTGGAATCTGCTTTCCTGGGTCTCCTCTCTCAAATATATGCAACAGTCGG TAAGAAGCACATCATTGCAGAGGGAGCTGAGTTGAATTGGGATAAAGTAAACCTTGAACTTGAAGGAATAAAAATTAAGG TCTCATCACAAGAAGCTGAATGCCAAAAAGCTAAAAGGAGATTCAACTGTTGCAGTGTTTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0058800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCAATGGCAGGGTGATTCGGATGAGGGTATCGACTATATGTTCAAGGTTGTCATGGTTGGAGACTCTGGGGTTGG GAAATCTCAGCTTTTGAATAGGTTTGTGAGGAATGAGTTCCAAATGAAATCCAAAGCCACAATTGGGGTTGAATTTCTGA CCAAGACTGTTGTCATGGATCACAAGGTAGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTACCAGGCAATT ACAACTGCATATTACAGAGGTGCAACTGGCGCGTTACTAGCATATGACATAACCAATCGCCAATCCTTTGATCATGTTGA GAAGTGGCTCGATGAGCTGCGTGTACATGCAGATAATATAATTGTCATGCTTGTTGGCAACAAGTCTGACCTTAGTTCTG GTCGAGCAGTGCCTATGGAGGAAGCCAAAGACTTCGCCAAACAAAAGGGCCTCTTCTTCGTCGAGACATCAGCACTTGAC TCCAACAATGTGGAATCTGCTTTCCTGGGTCTCCTCTCTCAAATATATGCAACAGTCGGTAAGAAGCACATCATTGCAGA GGGAGCTGAGTTGAATTGGGATAAAGTAAACCTTGAACTTGAAGGAATAAAAATTAAGGTCTCATCACAAGAAGCTGAAT GCCAAAAAGCTAAAAGGAGATTCAACTGTTGCAGTGTTTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0058800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAQWQGDSDEGIDYMFKVVMVGDSGVGKSQLLNRFVRNEFQMKSKATIGVEFLTKTVVMDHKVVKAQIWDTAGQERYQAI TTAYYRGATGALLAYDITNRQSFDHVEKWLDELRVHADNIIVMLVGNKSDLSSGRAVPMEEAKDFAKQKGLFFVETSALD SNNVESAFLGLLSQIYATVGKKHIIAEGAELNWDKVNLELEGIKIKVSSQEAECQKAKRRFNCCSVF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24073
10 194 185 8.1E-97 –
PANTHER
PTHR24073:SF1025
10 194 185 8.1E-97 –
ProSiteProfiles
PS51419
11 224 214 33.956 –
Gene3D
G3DSA:3.40.50.300
13 196 184 4.6E-66 –
SUPERFAMILY
SSF52540
13 181 169 2.15E-58
IPR027417
CDD
cd01868
13 176 164 1.46794E-108 –
TIGRFAM
TIGR00231
14 168 155 4.2E-35
IPR005225
PRINTS
PR00449
16 37 22 5.6E-40 –
SMART
SM00173
16 178 163 1.1E-29 –
SMART
SM00175
16 178 163 3.5E-99 –
Pfam
PF00071
17 176 160 2.0E-61
IPR001806
SMART
SM00174
18 174 157 7.2E-12 –
SMART
SM00176
21 221 201 1.1E-10 –
PRINTS
PR00449
39 55 17 5.6E-40 –
PRINTS
PR00449
57 79 23 5.6E-40 –
PRINTS
PR00449
118 131 14 5.6E-40 –
PRINTS
PR00449
153 175 23 5.6E-40 –
Coils
Coil
200 220 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0058800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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